Wall clock time and date at job start Wed Apr 1 2020 04:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31424 * 1 3 3 Si 1.86802 * 119.99910 * 2 1 4 4 H 1.48504 * 109.46729 * 269.99815 * 3 2 1 5 5 H 1.48497 * 109.47326 * 29.99383 * 3 2 1 6 6 H 1.48501 * 109.47036 * 149.99904 * 3 2 1 7 7 C 1.38890 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99664 * 189.25064 * 7 2 1 9 9 N 1.37139 * 120.00207 * 9.24641 * 7 2 1 10 10 C 1.34770 * 119.99880 * 235.67023 * 9 7 2 11 11 O 1.21281 * 119.99584 * 185.67422 * 10 9 7 12 12 C 1.50699 * 120.00462 * 5.67600 * 10 9 7 13 13 O 1.45201 * 109.47413 * 174.93858 * 12 10 9 14 14 C 1.34229 * 117.00061 * 180.02562 * 13 12 10 15 15 O 1.20820 * 120.00040 * 359.97438 * 14 13 12 16 16 C 1.50697 * 119.99889 * 180.02562 * 14 13 12 17 17 C 1.53002 * 109.46849 * 299.99789 * 16 14 13 18 18 C 1.53004 * 109.47022 * 180.02562 * 17 16 14 19 19 C 1.52996 * 109.47361 * 59.99662 * 18 17 16 20 20 O 1.42902 * 109.47347 * 179.97438 * 19 18 17 21 21 C 1.52994 * 109.47438 * 300.00320 * 19 18 17 22 22 C 1.52996 * 109.47232 * 180.02562 * 16 14 13 23 23 C 1.39787 * 119.99815 * 55.66848 * 9 7 2 24 24 C 1.38961 * 120.07792 * 355.19088 * 23 9 7 25 25 C 1.38082 * 119.92435 * 179.97438 * 24 23 9 26 26 C 1.38311 * 120.07409 * 359.97438 * 25 24 23 27 27 C 1.38312 * 120.15706 * 0.02562 * 26 25 24 28 28 C 1.38079 * 120.07859 * 0.02562 * 27 26 25 29 29 H 0.97001 * 119.99727 * 4.99140 * 1 2 3 30 30 H 1.09000 * 109.46845 * 294.93904 * 12 10 9 31 31 H 1.08999 * 109.47301 * 54.93899 * 12 10 9 32 32 H 1.08998 * 109.47391 * 59.99450 * 16 14 13 33 33 H 1.09006 * 109.47181 * 299.99972 * 17 16 14 34 34 H 1.08995 * 109.47212 * 60.00448 * 17 16 14 35 35 H 1.08998 * 109.47058 * 299.99563 * 18 17 16 36 36 H 1.09007 * 109.47200 * 180.02562 * 18 17 16 37 37 H 1.09006 * 109.46967 * 60.00254 * 19 18 17 38 38 H 0.96691 * 113.99917 * 300.00461 * 20 19 18 39 39 H 1.09006 * 109.46988 * 299.99921 * 21 19 18 40 40 H 1.08995 * 109.47797 * 179.97438 * 21 19 18 41 41 H 1.09007 * 109.46979 * 299.99864 * 22 16 14 42 42 H 1.08998 * 109.47423 * 59.99419 * 22 16 14 43 43 H 1.07998 * 120.04135 * 359.70126 * 24 23 9 44 44 H 1.08001 * 119.96344 * 179.97438 * 25 24 23 45 45 H 1.08005 * 119.92332 * 179.97438 * 26 25 24 46 46 H 1.08001 * 119.95882 * 180.02562 * 27 26 25 47 47 H 1.08001 * 120.04261 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5458 1.4402 0.7001 7 6 2.0087 -1.2028 0.0005 8 1 3.0781 -1.2088 0.1509 9 7 1.3364 -2.3829 -0.1898 10 6 1.4382 -3.3709 0.7211 11 8 0.9287 -4.4500 0.5047 12 6 2.1852 -3.1349 2.0085 13 8 2.0518 -4.2991 2.8660 14 6 2.6629 -4.2498 4.0600 15 8 3.2890 -3.2666 4.3780 16 6 2.5691 -5.4212 5.0034 17 6 1.1016 -5.6807 5.3498 18 6 1.0063 -6.8696 6.3081 19 6 1.7847 -6.5570 7.5876 20 8 1.6952 -7.6672 8.4830 21 6 3.2522 -6.2974 7.2413 22 6 3.3470 -5.1088 6.2833 23 6 0.5454 -2.5608 -1.3285 24 6 0.3587 -1.5096 -2.2180 25 6 -0.4229 -1.6891 -3.3421 26 6 -1.0191 -2.9135 -3.5836 27 6 -0.8353 -3.9620 -2.7004 28 6 -0.0560 -3.7893 -1.5737 29 1 -0.4850 0.8369 -0.0731 30 1 3.2393 -2.9630 1.7907 31 1 1.7715 -2.2622 2.5139 32 1 2.9920 -6.3059 4.5275 33 1 0.6786 -4.7960 5.8258 34 1 0.5470 -5.9031 4.4382 35 1 1.4293 -7.7544 5.8325 36 1 -0.0393 -7.0548 6.5546 37 1 1.3616 -5.6721 8.0633 38 1 0.7915 -7.8886 8.7457 39 1 3.6753 -7.1823 6.7657 40 1 3.8067 -6.0742 8.1528 41 1 4.3926 -4.9236 6.0369 42 1 2.9237 -4.2242 6.7591 43 1 0.8206 -0.5521 -2.0280 44 1 -0.5688 -0.8724 -4.0336 45 1 -1.6302 -3.0511 -4.4634 46 1 -1.3021 -4.9169 -2.8923 47 1 0.0867 -4.6083 -0.8843 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795647322.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:03 Heat of formation + Delta-G solvation = -137.209835 kcal Electronic energy + Delta-G solvation = -30606.768347 eV Core-core repulsion = 26333.845856 eV Total energy + Delta-G solvation = -4272.922491 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.65221 -39.75885 -38.80816 -37.32863 -36.20390 -35.58179 -35.11478 -32.08288 -31.14759 -30.47269 -29.73668 -29.51244 -27.33100 -25.28411 -23.81769 -22.98456 -21.89381 -21.28025 -20.77561 -19.91958 -19.63152 -18.00281 -17.57780 -17.41618 -16.45468 -16.36991 -15.99193 -15.63185 -15.33073 -15.19203 -14.80052 -14.47089 -14.35210 -13.96292 -13.72040 -13.42200 -13.12288 -12.98534 -12.77826 -12.56966 -12.52875 -12.40737 -12.20722 -11.95712 -11.76058 -11.60974 -11.52494 -11.35266 -11.31551 -11.18129 -11.00678 -10.89381 -10.53353 -10.46714 -10.31656 -10.20836 -10.10131 -10.01049 -9.34446 -8.84183 -8.25352 -7.85810 -6.98833 -6.42307 -4.68345 2.32415 2.36807 2.50342 2.69940 2.99102 3.08452 3.10597 3.58622 3.84612 3.89839 4.31674 4.37209 4.42805 4.64118 4.72878 4.82109 4.92261 5.03075 5.04715 5.10704 5.18622 5.20288 5.49119 5.55750 5.60615 5.70993 5.73248 5.79005 5.82379 5.86015 5.86598 5.91274 5.98941 6.05390 6.11308 6.12378 6.63626 6.65957 6.71274 6.82087 7.06608 7.14774 7.35348 7.44011 7.54235 7.60535 7.67772 7.94535 7.96643 8.33718 8.72425 9.08058 9.45429 10.36232 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013658 B = 0.002728 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.534233 B =10261.600260 C =11818.412718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.059 3.941 3 Si 0.916 3.084 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.381 4.381 8 H 0.096 0.904 9 N -0.377 5.377 10 C 0.496 3.504 11 O -0.548 6.548 12 C 0.072 3.928 13 O -0.335 6.335 14 C 0.462 3.538 15 O -0.509 6.509 16 C -0.079 4.079 17 C -0.112 4.112 18 C -0.148 4.148 19 C 0.101 3.899 20 O -0.570 6.570 21 C -0.110 4.110 22 C -0.102 4.102 23 C 0.183 3.817 24 C -0.103 4.103 25 C -0.123 4.123 26 C -0.171 4.171 27 C -0.120 4.120 28 C -0.191 4.191 29 H 0.277 0.723 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.377 0.623 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.132 0.868 44 H 0.105 0.895 45 H 0.101 0.899 46 H 0.106 0.894 47 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.941 -8.162 9.575 12.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.152 4.152 3 Si 0.741 3.259 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.508 4.508 8 H 0.114 0.886 9 N -0.086 5.086 10 C 0.286 3.714 11 O -0.431 6.431 12 C -0.004 4.004 13 O -0.250 6.250 14 C 0.305 3.695 15 O -0.397 6.397 16 C -0.098 4.098 17 C -0.149 4.149 18 C -0.186 4.186 19 C 0.042 3.958 20 O -0.376 6.376 21 C -0.148 4.148 22 C -0.139 4.139 23 C 0.087 3.913 24 C -0.124 4.124 25 C -0.142 4.142 26 C -0.190 4.190 27 C -0.139 4.139 28 C -0.210 4.210 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.122 0.878 32 H 0.128 0.872 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.224 0.776 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.150 0.850 44 H 0.123 0.877 45 H 0.119 0.881 46 H 0.124 0.876 47 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 2.390 -8.204 9.616 12.865 hybrid contribution -0.375 1.410 -0.198 1.472 sum 2.015 -6.795 9.418 11.787 Atomic orbital electron populations 1.70031 1.06153 1.28994 1.41683 1.25639 0.95336 1.00337 0.93891 0.86089 0.79897 0.80867 0.79095 1.19581 1.20399 1.18711 1.19420 0.92428 0.82501 1.56406 0.88638 1.40783 1.39871 1.13498 1.14443 1.20240 0.81917 0.84788 0.84422 1.90218 1.49356 1.26140 1.77354 1.22576 1.02047 0.86302 0.89505 1.86474 1.68091 1.43340 1.27124 1.23642 0.75802 0.88768 0.81332 1.90663 1.39510 1.33727 1.75836 1.21097 0.99079 0.95624 0.93989 1.21496 0.93851 0.98786 1.00790 1.22260 1.00878 0.99036 0.96450 1.21901 0.96559 0.88439 0.88890 1.86500 1.33011 1.51821 1.66226 1.21466 0.94935 0.98653 0.99732 1.21406 1.01190 0.98212 0.93110 1.18237 0.93066 0.93253 0.86732 1.21027 0.99576 0.98818 0.92991 1.20778 0.99199 0.96659 0.97591 1.20818 1.03557 0.94362 1.00284 1.20874 0.99706 0.97919 0.95390 1.22789 0.99433 0.99225 0.99582 0.91272 0.88803 0.87793 0.87162 0.91112 0.89426 0.90610 0.91098 0.92526 0.77560 0.90876 0.90691 0.90135 0.90611 0.85021 0.87669 0.88074 0.87598 0.80840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.16 11.39 55.49 0.63 -20.53 16 2 C 0.06 1.39 3.49 -17.48 -0.06 1.33 16 3 Si 0.92 18.31 29.57 -169.99 -5.03 13.28 16 4 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 7 C -0.38 -9.14 7.61 -14.94 -0.11 -9.25 16 8 H 0.10 2.18 7.85 -52.49 -0.41 1.77 16 9 N -0.38 -9.29 2.62 -58.98 -0.15 -9.45 16 10 C 0.50 11.64 7.65 -10.99 -0.08 11.56 16 11 O -0.55 -13.45 12.90 -14.05 -0.18 -13.63 16 12 C 0.07 1.46 4.77 36.01 0.17 1.63 16 13 O -0.34 -6.19 9.66 -45.88 -0.44 -6.64 16 14 C 0.46 7.33 7.25 36.00 0.26 7.59 16 15 O -0.51 -9.18 15.73 -18.75 -0.29 -9.48 16 16 C -0.08 -0.90 2.63 -91.77 -0.24 -1.14 16 17 C -0.11 -1.15 5.14 -26.73 -0.14 -1.29 16 18 C -0.15 -1.22 5.54 -26.73 -0.15 -1.37 16 19 C 0.10 0.84 3.47 -26.74 -0.09 0.75 16 20 O -0.57 -4.88 13.32 -35.23 -0.47 -5.35 16 21 C -0.11 -0.97 5.57 -26.76 -0.15 -1.12 16 22 C -0.10 -1.02 4.49 -26.75 -0.12 -1.14 16 23 C 0.18 4.53 6.05 -83.69 -0.51 4.03 16 24 C -0.10 -2.43 7.87 -39.37 -0.31 -2.74 16 25 C -0.12 -2.55 10.04 -39.61 -0.40 -2.94 16 26 C -0.17 -3.33 10.04 -39.53 -0.40 -3.73 16 27 C -0.12 -2.45 10.04 -39.61 -0.40 -2.85 16 28 C -0.19 -4.46 9.06 -39.37 -0.36 -4.82 16 29 H 0.28 6.61 8.32 -40.82 -0.34 6.27 16 30 H 0.09 1.78 8.13 -51.93 -0.42 1.36 16 31 H 0.10 2.16 8.04 -51.93 -0.42 1.74 16 32 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.09 1.01 8.11 -51.93 -0.42 0.58 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.38 1.71 9.08 45.56 0.41 2.12 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.83 8.10 -51.92 -0.42 0.41 16 42 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 43 H 0.13 3.20 5.15 -52.49 -0.27 2.93 16 44 H 0.11 1.88 8.06 -52.49 -0.42 1.46 16 45 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 46 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 47 H 0.18 4.21 4.50 -56.37 -0.25 3.95 16 LS Contribution 383.78 15.07 5.78 5.78 Total: -1.00 -29.85 383.78 -9.22 -39.07 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -5.99 Total: 12.43 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -3.08 Total: -5.50 kcal Atomic # 7 Polarization: -30.45 SS G_CDS: 0.48 Total: -29.97 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -1.39 Total: -35.10 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.85 -9.22 -39.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795647322.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.135 kcal (2) G-P(sol) polarization free energy of solvation -29.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds