Wall clock time and date at job start Wed Apr 1 2020 04:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86805 * 120.00258 * 2 1 4 4 H 1.48497 * 109.46920 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46944 * 299.99804 * 3 2 1 6 6 H 1.48492 * 109.46737 * 60.00257 * 3 2 1 7 7 C 1.38658 * 119.99683 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99808 * 179.97438 * 7 2 1 9 9 O 1.34829 * 120.00048 * 0.02562 * 7 2 1 10 10 C 1.35750 * 116.99891 * 185.05790 * 9 7 2 11 11 C 1.38876 * 120.06743 * 354.45574 * 10 9 7 12 12 C 1.38105 * 119.92567 * 179.97438 * 11 10 9 13 13 C 1.38299 * 120.07380 * 0.02562 * 12 11 10 14 14 C 1.50694 * 119.93391 * 179.97438 * 13 12 11 15 15 N 1.46498 * 109.46752 * 90.00099 * 14 13 12 16 16 C 1.34780 * 119.99985 * 179.97438 * 15 14 13 17 17 O 1.21287 * 119.99816 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00470 * 179.97438 * 16 15 14 19 19 H 1.09004 * 110.04094 * 60.00893 * 18 16 15 20 20 C 1.54019 * 110.05978 * 298.55071 * 18 16 15 21 21 C 1.54313 * 106.61667 * 241.08498 * 20 18 16 22 22 C 1.55070 * 104.22959 * 336.56682 * 21 20 18 23 23 C 1.53642 * 110.10822 * 181.49752 * 18 16 15 24 24 O 1.43068 * 110.64243 * 23.39911 * 23 18 16 25 25 C 1.44952 * 104.60296 * 213.66220 * 24 23 18 26 26 C 1.54970 * 101.82277 * 35.41896 * 25 24 23 27 27 O 1.42679 * 110.87873 * 261.53277 * 23 18 16 28 28 C 1.38305 * 120.13219 * 0.23161 * 13 12 11 29 29 C 1.38096 * 120.07361 * 359.49094 * 28 13 12 30 30 H 0.97007 * 119.99530 * 359.97438 * 1 2 3 31 31 H 1.07999 * 120.03980 * 359.96011 * 11 10 9 32 32 H 1.07999 * 119.95897 * 180.02562 * 12 11 10 33 33 H 1.09000 * 109.46938 * 330.00228 * 14 13 12 34 34 H 1.08998 * 109.47203 * 209.99928 * 14 13 12 35 35 H 0.96997 * 120.00594 * 0.02562 * 15 14 13 36 36 H 1.09004 * 110.03464 * 0.38901 * 20 18 16 37 37 H 1.09002 * 110.04103 * 121.78003 * 20 18 16 38 38 H 1.09002 * 110.47475 * 95.23102 * 21 20 18 39 39 H 1.09000 * 110.47078 * 217.83904 * 21 20 18 40 40 H 1.09004 * 110.72294 * 278.96095 * 22 21 20 41 41 H 1.08999 * 110.93407 * 155.66614 * 22 21 20 42 42 H 1.08998 * 110.95941 * 277.28301 * 25 24 23 43 43 H 1.09003 * 110.99026 * 153.55922 * 25 24 23 44 44 H 1.08994 * 110.69283 * 206.42750 * 26 25 24 45 45 H 1.09001 * 110.83835 * 83.29764 * 26 25 24 46 46 H 1.08003 * 119.96011 * 179.72258 * 28 13 12 47 47 H 1.08001 * 120.03519 * 180.25389 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8909 2.3963 1.2125 7 6 2.0088 -1.2009 -0.0005 8 1 3.0887 -1.2009 -0.0010 9 8 1.3346 -2.3685 -0.0016 10 6 2.0698 -3.5047 0.1046 11 6 3.4569 -3.4396 0.0920 12 6 4.2020 -4.5973 0.2008 13 6 3.5682 -5.8206 0.3215 14 6 4.3843 -7.0819 0.4393 15 7 4.6549 -7.3581 1.8524 16 6 5.3732 -8.4439 2.2013 17 8 5.7959 -9.1921 1.3453 18 6 5.6521 -8.7278 3.6547 19 1 4.7151 -8.8551 4.1970 20 6 6.4669 -7.5754 4.2712 21 6 7.8015 -8.1849 4.7493 22 6 7.4825 -9.6887 4.9529 23 6 6.5150 -9.9919 3.7899 24 8 7.2486 -10.2329 2.5855 25 6 7.3234 -11.6771 2.4860 26 6 5.9500 -12.1065 3.0612 27 8 5.7080 -11.1282 4.0952 28 6 2.1869 -5.8891 0.3290 29 6 1.4362 -4.7346 0.2264 30 1 -0.4850 0.8401 0.0004 31 1 3.9525 -2.4847 -0.0029 32 1 5.2808 -4.5473 0.1915 33 1 5.3269 -6.9559 -0.0933 34 1 3.8306 -7.9148 0.0059 35 1 4.3166 -6.7601 2.5370 36 1 6.6546 -6.8075 3.5206 37 1 5.9279 -7.1472 5.1164 38 1 8.5724 -8.0584 3.9891 39 1 8.1134 -7.7299 5.6894 40 1 6.9949 -9.8529 5.9138 41 1 8.3859 -10.2930 4.8714 42 1 8.1399 -12.0679 3.0931 43 1 7.4269 -11.9920 1.4476 44 1 6.0065 -13.1090 3.4852 45 1 5.1761 -12.0568 2.2952 46 1 1.6948 -6.8463 0.4189 47 1 0.3576 -4.7884 0.2364 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806771629.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:49 Heat of formation + Delta-G solvation = -125.099684 kcal Electronic energy + Delta-G solvation = -30285.446553 eV Core-core repulsion = 26013.049198 eV Total energy + Delta-G solvation = -4272.397355 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.29227 -39.43573 -38.88496 -36.91770 -36.44635 -35.14391 -34.27775 -32.37331 -30.58032 -30.25860 -30.07252 -29.04671 -26.89298 -25.85021 -24.66984 -23.50840 -22.05844 -21.82113 -21.02980 -20.59606 -19.90506 -18.08858 -17.78029 -17.37522 -16.95556 -16.53354 -15.85405 -15.64389 -15.15048 -15.06504 -14.86253 -14.60506 -14.46110 -14.20509 -13.89286 -13.70174 -13.51570 -13.35394 -13.05376 -12.89173 -12.79160 -12.70410 -12.56944 -12.20470 -12.10567 -11.73820 -11.61223 -11.53587 -11.42977 -11.37207 -11.05036 -10.95083 -10.77886 -10.68175 -10.48220 -10.31177 -9.91508 -9.42587 -9.31675 -8.91016 -8.84594 -8.28575 -7.32203 -6.53429 -4.12223 2.07573 2.12914 2.77876 3.06466 3.09110 3.14754 3.16794 3.46330 3.71284 3.89983 4.13199 4.21995 4.42339 4.50602 4.65073 4.73015 4.86978 4.95367 5.01544 5.02541 5.13860 5.17890 5.21487 5.26047 5.26999 5.31506 5.43536 5.48001 5.54114 5.57482 5.66818 5.68370 5.74675 5.81332 5.82079 5.94506 5.99000 6.12263 6.35159 6.58474 6.62385 6.80510 6.95815 6.97801 7.14451 7.27736 7.35047 7.67808 7.72930 7.91477 8.39818 8.92111 9.60517 10.64202 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.021713 B = 0.002000 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.267030 B =13999.785202 C =14640.393354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.094 0.906 9 O -0.174 6.174 10 C 0.160 3.840 11 C -0.237 4.237 12 C -0.051 4.051 13 C -0.213 4.213 14 C 0.182 3.818 15 N -0.726 5.726 16 C 0.516 3.484 17 O -0.517 6.517 18 C -0.123 4.123 19 H 0.114 0.886 20 C -0.115 4.115 21 C -0.118 4.118 22 C -0.143 4.143 23 C 0.268 3.732 24 O -0.324 6.324 25 C 0.018 3.982 26 C 0.024 3.976 27 O -0.376 6.376 28 C -0.055 4.055 29 C -0.195 4.195 30 H 0.271 0.729 31 H 0.128 0.872 32 H 0.108 0.892 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.400 0.600 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.106 0.894 44 H 0.095 0.905 45 H 0.077 0.923 46 H 0.112 0.888 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.050 -19.602 9.404 25.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.111 0.889 9 O -0.077 6.077 10 C 0.105 3.895 11 C -0.256 4.256 12 C -0.070 4.070 13 C -0.214 4.214 14 C 0.059 3.941 15 N -0.378 5.378 16 C 0.301 3.699 17 O -0.392 6.392 18 C -0.145 4.145 19 H 0.132 0.868 20 C -0.153 4.153 21 C -0.155 4.155 22 C -0.181 4.181 23 C 0.189 3.811 24 O -0.243 6.243 25 C -0.059 4.059 26 C -0.052 4.052 27 O -0.296 6.296 28 C -0.074 4.074 29 C -0.214 4.214 30 H 0.081 0.919 31 H 0.146 0.854 32 H 0.126 0.874 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.234 0.766 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.124 0.876 44 H 0.113 0.887 45 H 0.096 0.904 46 H 0.130 0.870 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 13.867 -19.769 8.750 25.684 hybrid contribution 0.230 1.035 0.259 1.092 sum 14.097 -18.733 9.009 25.116 Atomic orbital electron populations 1.70048 1.06003 1.27740 1.45581 1.25323 0.95867 0.98939 0.96387 0.85628 0.79151 0.80222 0.78331 1.19043 1.20075 1.20062 1.21401 0.91884 0.80717 1.52884 0.88881 1.83979 1.34509 1.11554 1.77616 1.19437 0.90319 0.88052 0.91652 1.21160 0.93772 0.98947 1.11711 1.20638 0.98359 0.91628 0.96356 1.19228 0.93565 0.93674 1.14982 1.19926 0.98288 0.94661 0.81196 1.46356 1.55103 1.27058 1.09290 1.20203 0.78274 0.81185 0.90217 1.90722 1.49795 1.47258 1.51382 1.22278 1.01055 0.95737 0.95394 0.86764 1.22136 0.95822 0.96376 1.00977 1.22288 0.97331 0.94193 1.01720 1.23009 0.99265 0.97433 0.98357 1.23382 0.85749 0.86391 0.85550 1.89468 1.73853 1.20315 1.40616 1.24298 0.96443 0.82003 1.03131 1.24184 0.97231 0.92958 0.90850 1.88801 1.66371 1.26597 1.47879 1.20531 0.92788 0.96803 0.97247 1.20216 0.99661 0.90257 1.11303 0.91939 0.85430 0.87436 0.91754 0.91805 0.76621 0.90475 0.90204 0.90837 0.90677 0.89586 0.90454 0.91419 0.87610 0.88670 0.90442 0.87013 0.86396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.66 13.67 55.48 0.76 -23.90 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.02 29.55 -169.99 -5.02 14.99 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.39 -10.67 9.49 30.89 0.29 -10.37 16 8 H 0.09 2.34 5.20 -52.49 -0.27 2.06 16 9 O -0.17 -4.82 9.76 0.05 0.00 -4.82 16 10 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 11 C -0.24 -4.90 9.17 -39.39 -0.36 -5.26 16 12 C -0.05 -0.88 9.69 -39.61 -0.38 -1.27 16 13 C -0.21 -3.43 5.25 -104.58 -0.55 -3.98 16 14 C 0.18 2.58 5.80 -5.20 -0.03 2.55 16 15 N -0.73 -9.26 5.39 -61.48 -0.33 -9.59 16 16 C 0.52 6.98 6.83 -10.99 -0.07 6.91 16 17 O -0.52 -8.55 13.82 -19.34 -0.27 -8.82 16 18 C -0.12 -1.33 3.05 -90.91 -0.28 -1.61 16 19 H 0.11 1.13 8.07 -51.93 -0.42 0.71 16 20 C -0.12 -1.02 6.38 -25.51 -0.16 -1.18 16 21 C -0.12 -0.96 6.83 -24.95 -0.17 -1.13 16 22 C -0.14 -1.23 6.31 -24.96 -0.16 -1.39 16 23 C 0.27 2.97 1.02 -25.73 -0.03 2.94 16 24 O -0.32 -4.11 7.85 -67.87 -0.53 -4.64 16 25 C 0.02 0.16 7.96 38.20 0.30 0.47 16 26 C 0.02 0.22 8.08 38.20 0.31 0.53 16 27 O -0.38 -4.25 10.93 -59.03 -0.64 -4.89 16 28 C -0.05 -0.93 9.69 -39.61 -0.38 -1.31 16 29 C -0.20 -3.93 9.99 -39.40 -0.39 -4.33 16 30 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.13 2.66 5.64 -52.49 -0.30 2.37 16 32 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 33 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 34 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 35 H 0.40 4.58 8.43 -40.82 -0.34 4.23 16 36 H 0.08 0.74 7.59 -51.93 -0.39 0.34 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 47 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 LS Contribution 386.82 15.07 5.83 5.83 Total: -1.00 -32.45 386.82 -9.41 -41.86 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -6.77 Total: 7.99 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: -2.42 Total: -14.01 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.43 Total: -33.49 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -1.44 Total: -23.17 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.45 -9.41 -41.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806771629.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.242 kcal (2) G-P(sol) polarization free energy of solvation -32.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds