Wall clock time and date at job start Wed Apr 1 2020 04:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86805 * 120.00258 * 2 1 4 4 H 1.48497 * 109.46920 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46944 * 299.99804 * 3 2 1 6 6 H 1.48492 * 109.46737 * 60.00257 * 3 2 1 7 7 C 1.38658 * 119.99683 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99808 * 179.97438 * 7 2 1 9 9 O 1.34829 * 120.00048 * 0.02562 * 7 2 1 10 10 C 1.35750 * 116.99891 * 185.05790 * 9 7 2 11 11 C 1.38876 * 120.06743 * 354.45574 * 10 9 7 12 12 C 1.38105 * 119.92567 * 179.97438 * 11 10 9 13 13 C 1.38299 * 120.07380 * 0.02562 * 12 11 10 14 14 C 1.50694 * 119.93391 * 179.97438 * 13 12 11 15 15 N 1.46498 * 109.46752 * 90.00099 * 14 13 12 16 16 C 1.34780 * 119.99985 * 179.97438 * 15 14 13 17 17 O 1.21287 * 119.99816 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00470 * 179.97438 * 16 15 14 19 19 H 1.09004 * 110.04094 * 60.00893 * 18 16 15 20 20 C 1.54019 * 110.05978 * 298.55071 * 18 16 15 21 21 C 1.54313 * 106.61667 * 241.08498 * 20 18 16 22 22 C 1.55070 * 104.22959 * 336.56682 * 21 20 18 23 23 C 1.53642 * 110.10822 * 181.49752 * 18 16 15 24 24 O 1.43068 * 110.64243 * 23.39911 * 23 18 16 25 25 C 1.44952 * 104.60296 * 213.66220 * 24 23 18 26 26 C 1.54970 * 101.82277 * 35.41896 * 25 24 23 27 27 O 1.42679 * 110.87873 * 261.53277 * 23 18 16 28 28 C 1.38305 * 120.13219 * 0.23161 * 13 12 11 29 29 C 1.38096 * 120.07361 * 359.49094 * 28 13 12 30 30 H 0.97007 * 119.99530 * 359.97438 * 1 2 3 31 31 H 1.07999 * 120.03980 * 359.96011 * 11 10 9 32 32 H 1.07999 * 119.95897 * 180.02562 * 12 11 10 33 33 H 1.09000 * 109.46938 * 330.00228 * 14 13 12 34 34 H 1.08998 * 109.47203 * 209.99928 * 14 13 12 35 35 H 0.96997 * 120.00594 * 0.02562 * 15 14 13 36 36 H 1.09004 * 110.03464 * 0.38901 * 20 18 16 37 37 H 1.09002 * 110.04103 * 121.78003 * 20 18 16 38 38 H 1.09002 * 110.47475 * 95.23102 * 21 20 18 39 39 H 1.09000 * 110.47078 * 217.83904 * 21 20 18 40 40 H 1.09004 * 110.72294 * 278.96095 * 22 21 20 41 41 H 1.08999 * 110.93407 * 155.66614 * 22 21 20 42 42 H 1.08998 * 110.95941 * 277.28301 * 25 24 23 43 43 H 1.09003 * 110.99026 * 153.55922 * 25 24 23 44 44 H 1.08994 * 110.69283 * 206.42750 * 26 25 24 45 45 H 1.09001 * 110.83835 * 83.29764 * 26 25 24 46 46 H 1.08003 * 119.96011 * 179.72258 * 28 13 12 47 47 H 1.08001 * 120.03519 * 180.25389 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8909 2.3963 1.2125 7 6 2.0088 -1.2009 -0.0005 8 1 3.0887 -1.2009 -0.0010 9 8 1.3346 -2.3685 -0.0016 10 6 2.0698 -3.5047 0.1046 11 6 3.4569 -3.4396 0.0920 12 6 4.2020 -4.5973 0.2008 13 6 3.5682 -5.8206 0.3215 14 6 4.3843 -7.0819 0.4393 15 7 4.6549 -7.3581 1.8524 16 6 5.3732 -8.4439 2.2013 17 8 5.7959 -9.1921 1.3453 18 6 5.6521 -8.7278 3.6547 19 1 4.7151 -8.8551 4.1970 20 6 6.4669 -7.5754 4.2712 21 6 7.8015 -8.1849 4.7493 22 6 7.4825 -9.6887 4.9529 23 6 6.5150 -9.9919 3.7899 24 8 7.2486 -10.2329 2.5855 25 6 7.3234 -11.6771 2.4860 26 6 5.9500 -12.1065 3.0612 27 8 5.7080 -11.1282 4.0952 28 6 2.1869 -5.8891 0.3290 29 6 1.4362 -4.7346 0.2264 30 1 -0.4850 0.8401 0.0004 31 1 3.9525 -2.4847 -0.0029 32 1 5.2808 -4.5473 0.1915 33 1 5.3269 -6.9559 -0.0933 34 1 3.8306 -7.9148 0.0059 35 1 4.3166 -6.7601 2.5370 36 1 6.6546 -6.8075 3.5206 37 1 5.9279 -7.1472 5.1164 38 1 8.5724 -8.0584 3.9891 39 1 8.1134 -7.7299 5.6894 40 1 6.9949 -9.8529 5.9138 41 1 8.3859 -10.2930 4.8714 42 1 8.1399 -12.0679 3.0931 43 1 7.4269 -11.9920 1.4476 44 1 6.0065 -13.1090 3.4852 45 1 5.1761 -12.0568 2.2952 46 1 1.6948 -6.8463 0.4189 47 1 0.3576 -4.7884 0.2364 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806771629.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:48 Heat of formation + Delta-G solvation = -145.466708 kcal Electronic energy + Delta-G solvation = -30286.329733 eV Core-core repulsion = 26013.049198 eV Total energy + Delta-G solvation = -4273.280535 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.09979 -40.90576 -40.12975 -38.48415 -37.26484 -35.96151 -35.52801 -34.27066 -31.89488 -31.72658 -30.78204 -30.10186 -27.70870 -27.53182 -26.14132 -24.21514 -23.65420 -22.80398 -22.10695 -21.68050 -20.86043 -19.87914 -18.97059 -18.52643 -18.10147 -17.43069 -16.85553 -16.65358 -16.39028 -16.27895 -15.99683 -15.84115 -15.59651 -15.54479 -15.42803 -14.92795 -14.89197 -14.41323 -14.23578 -14.12866 -13.86886 -13.70342 -13.60104 -13.39130 -13.19755 -13.04447 -12.88899 -12.56765 -12.42734 -12.35095 -12.23803 -12.19106 -12.09856 -12.08367 -11.70877 -11.20481 -11.06963 -10.84604 -10.73681 -10.25180 -9.97316 -9.81661 -9.00754 -8.48658 -6.16769 0.54000 0.56768 1.35999 1.43256 1.53907 1.74668 2.16680 2.23453 2.57673 2.85497 2.95453 3.16922 3.41380 3.47817 3.50801 3.74412 3.85732 3.95128 4.02309 4.04188 4.16528 4.17902 4.25412 4.33664 4.43370 4.46068 4.51235 4.55971 4.60810 4.64039 4.75969 4.78822 4.80280 4.89483 4.91327 5.03275 5.04005 5.13017 5.14050 5.14260 5.25672 5.34513 5.49159 5.52913 5.68393 5.74685 6.01235 6.14977 6.23189 6.64763 6.96301 7.35525 7.75483 8.74364 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.021713 B = 0.002000 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.267030 B =13999.785202 C =14640.393354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.251 1.251 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.412 4.412 8 H 0.104 0.896 9 O -0.229 6.229 10 C 0.123 3.877 11 C -0.242 4.242 12 C -0.046 4.046 13 C -0.181 4.181 14 C 0.188 3.812 15 N -0.719 5.719 16 C 0.515 3.485 17 O -0.548 6.548 18 C -0.124 4.124 19 H 0.124 0.876 20 C -0.113 4.113 21 C -0.115 4.115 22 C -0.137 4.137 23 C 0.258 3.742 24 O -0.353 6.353 25 C 0.013 3.987 26 C 0.022 3.978 27 O -0.390 6.390 28 C -0.045 4.045 29 C -0.204 4.204 30 H 0.273 0.727 31 H 0.121 0.879 32 H 0.138 0.862 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.408 0.592 36 H 0.068 0.932 37 H 0.101 0.899 38 H 0.061 0.939 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.109 0.891 44 H 0.124 0.876 45 H 0.063 0.937 46 H 0.145 0.855 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.543 -21.246 10.826 29.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.174 1.174 5 H -0.195 1.195 6 H -0.193 1.193 7 C -0.488 4.488 8 H 0.121 0.879 9 O -0.135 6.135 10 C 0.072 3.928 11 C -0.261 4.261 12 C -0.064 4.064 13 C -0.182 4.182 14 C 0.065 3.935 15 N -0.372 5.372 16 C 0.302 3.698 17 O -0.425 6.425 18 C -0.146 4.146 19 H 0.142 0.858 20 C -0.150 4.150 21 C -0.153 4.153 22 C -0.175 4.175 23 C 0.180 3.820 24 O -0.273 6.273 25 C -0.063 4.063 26 C -0.054 4.054 27 O -0.311 6.311 28 C -0.063 4.063 29 C -0.223 4.223 30 H 0.082 0.918 31 H 0.138 0.862 32 H 0.156 0.844 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.244 0.756 36 H 0.087 0.913 37 H 0.119 0.881 38 H 0.080 0.920 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.100 0.900 42 H 0.107 0.893 43 H 0.127 0.873 44 H 0.142 0.858 45 H 0.081 0.919 46 H 0.163 0.837 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 16.390 -21.465 10.188 28.865 hybrid contribution -0.422 1.126 -0.185 1.217 sum 15.968 -20.339 10.003 27.726 Atomic orbital electron populations 1.70187 1.08027 1.28792 1.48661 1.26590 0.96840 1.02764 0.95825 0.84529 0.78303 0.74871 0.78527 1.17387 1.19505 1.19323 1.21868 0.92565 0.81312 1.53102 0.87900 1.83950 1.36055 1.12656 1.80837 1.19980 0.91615 0.87948 0.93302 1.21238 0.92997 1.00025 1.11887 1.20920 0.99744 0.90724 0.95020 1.19498 0.93460 0.94163 1.11092 1.19805 0.97993 0.93392 0.82302 1.46199 1.55043 1.27254 1.08741 1.20670 0.77421 0.80527 0.91215 1.90712 1.50975 1.48271 1.52548 1.22368 1.01960 0.96770 0.93458 0.85841 1.22173 0.96147 0.95380 1.01346 1.22295 0.96600 0.94000 1.02372 1.23000 0.98949 0.97738 0.97803 1.23637 0.86156 0.86277 0.85977 1.89424 1.74148 1.22138 1.41577 1.24488 0.97196 0.80700 1.03884 1.24306 0.96728 0.93936 0.90456 1.88775 1.66824 1.27095 1.48423 1.20862 0.93078 0.96954 0.95415 1.20442 1.00069 0.90393 1.11395 0.91803 0.86152 0.84445 0.91554 0.91344 0.75617 0.91329 0.88066 0.92024 0.88538 0.88507 0.89953 0.89297 0.87335 0.85802 0.91871 0.83688 0.86667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.46 13.67 21.61 0.30 -55.16 16 2 C -0.02 -1.25 5.49 84.83 0.47 -0.78 16 3 Si 1.02 41.93 29.55 68.60 2.03 43.95 16 4 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 5 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 6 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 7 C -0.41 -23.39 9.49 67.92 0.64 -22.75 16 8 H 0.10 5.34 5.20 -2.91 -0.02 5.32 16 9 O -0.23 -13.40 9.76 -22.74 -0.22 -13.62 16 10 C 0.12 5.85 6.65 22.58 0.15 6.00 16 11 C -0.24 -10.00 9.17 22.39 0.21 -9.79 16 12 C -0.05 -1.47 9.69 22.25 0.22 -1.26 16 13 C -0.18 -5.30 5.25 -19.84 -0.10 -5.40 16 14 C 0.19 4.75 5.80 85.63 0.50 5.24 16 15 N -0.72 -16.32 5.39 -466.79 -2.52 -18.83 16 16 C 0.52 12.86 6.83 87.66 0.60 13.46 16 17 O -0.55 -17.34 13.82 20.75 0.29 -17.06 16 18 C -0.12 -2.40 3.05 -10.98 -0.03 -2.44 16 19 H 0.12 2.13 8.07 -2.38 -0.02 2.11 16 20 C -0.11 -1.67 6.38 31.38 0.20 -1.47 16 21 C -0.12 -1.56 6.83 31.75 0.22 -1.34 16 22 C -0.14 -2.01 6.31 31.74 0.20 -1.81 16 23 C 0.26 5.20 1.02 31.25 0.03 5.23 16 24 O -0.35 -8.48 7.85 -117.77 -0.92 -9.40 16 25 C 0.01 0.22 7.96 72.66 0.58 0.80 16 26 C 0.02 0.36 8.08 72.66 0.59 0.94 16 27 O -0.39 -8.09 10.93 -126.23 -1.38 -9.47 16 28 C -0.04 -1.40 9.69 22.25 0.22 -1.19 16 29 C -0.20 -8.23 9.99 22.39 0.22 -8.01 16 30 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 31 H 0.12 5.09 5.64 -2.91 -0.02 5.07 16 32 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 33 H 0.07 1.73 8.08 -2.39 -0.02 1.71 16 34 H 0.07 1.74 8.08 -2.39 -0.02 1.72 16 35 H 0.41 8.06 8.43 -92.71 -0.78 7.27 16 36 H 0.07 1.14 7.59 -2.39 -0.02 1.12 16 37 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 47 H 0.12 4.63 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -74.74 386.82 2.68 -72.07 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: 0.22 Total: 32.09 kcal Atomic # 6 Polarization: -29.46 SS G_CDS: 4.89 Total: -24.57 kcal Atomic # 7 Polarization: -71.77 SS G_CDS: -2.22 Total: -73.99 kcal Atomic # 8 Polarization: -47.30 SS G_CDS: -2.24 Total: -49.54 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.95 kcal Total: -74.74 2.68 -72.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806771629.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.399 kcal (2) G-P(sol) polarization free energy of solvation -74.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds