Wall clock time and date at job start Wed Apr 1 2020 04:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86795 * 120.00310 * 2 1 4 4 H 1.48501 * 109.47129 * 269.99936 * 3 2 1 5 5 H 1.48491 * 109.47340 * 30.00082 * 3 2 1 6 6 H 1.48498 * 109.47060 * 149.99957 * 3 2 1 7 7 C 1.38654 * 119.99344 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00009 * 180.02562 * 7 2 1 9 9 O 1.34834 * 120.00579 * 359.97438 * 7 2 1 10 10 C 1.35748 * 117.00023 * 174.93940 * 9 7 2 11 11 C 1.38881 * 120.06474 * 185.31940 * 10 9 7 12 12 C 1.38103 * 119.92946 * 179.72101 * 11 10 9 13 13 C 1.38302 * 120.06656 * 0.53039 * 12 11 10 14 14 C 1.50703 * 119.92975 * 179.74364 * 13 12 11 15 15 N 1.46496 * 109.46977 * 270.02295 * 14 13 12 16 16 C 1.34782 * 120.00126 * 180.02562 * 15 14 13 17 17 O 1.21280 * 119.99703 * 359.97438 * 16 15 14 18 18 C 1.50692 * 120.00098 * 180.02562 * 16 15 14 19 19 H 1.08998 * 110.04615 * 36.17724 * 18 16 15 20 20 C 1.54360 * 110.05476 * 157.68461 * 18 16 15 21 21 C 1.54919 * 104.20640 * 95.69652 * 20 18 16 22 22 C 1.54970 * 102.78637 * 37.75176 * 21 20 18 23 23 C 1.53536 * 110.05882 * 274.71985 * 18 16 15 24 24 O 1.43356 * 110.18002 * 121.38227 * 23 18 16 25 25 C 1.44877 * 104.69902 * 214.57033 * 24 23 18 26 26 C 1.54947 * 101.77808 * 35.72076 * 25 24 23 27 27 O 1.42982 * 110.37163 * 0.62154 * 23 18 16 28 28 C 1.38302 * 120.13780 * 359.76688 * 13 12 11 29 29 C 1.38098 * 120.07051 * 359.95364 * 28 13 12 30 30 H 0.97008 * 119.99912 * 359.97438 * 1 2 3 31 31 H 1.07997 * 120.03394 * 359.97438 * 11 10 9 32 32 H 1.08000 * 119.96573 * 180.27549 * 12 11 10 33 33 H 1.09001 * 109.47092 * 30.02120 * 14 13 12 34 34 H 1.08998 * 109.47078 * 150.02245 * 14 13 12 35 35 H 0.97000 * 120.00268 * 0.02562 * 15 14 13 36 36 H 1.09000 * 110.48578 * 214.37398 * 20 18 16 37 37 H 1.08997 * 110.48747 * 337.01124 * 20 18 16 38 38 H 1.09006 * 110.74759 * 279.43099 * 21 20 18 39 39 H 1.08994 * 110.91075 * 156.15073 * 21 20 18 40 40 H 1.09001 * 110.49799 * 203.68281 * 22 21 20 41 41 H 1.08994 * 110.61524 * 81.05557 * 22 21 20 42 42 H 1.09005 * 110.96831 * 277.60388 * 25 24 23 43 43 H 1.08998 * 110.96904 * 153.84235 * 25 24 23 44 44 H 1.09004 * 110.69595 * 206.26851 * 26 25 24 45 45 H 1.09007 * 110.83914 * 83.13822 * 26 25 24 46 46 H 1.08002 * 119.96001 * 179.97438 * 28 13 12 47 47 H 1.07995 * 120.03266 * 180.02562 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4472 2.6526 0.7000 6 1 3.5471 1.4400 0.7000 7 6 2.0087 -1.2009 -0.0005 8 1 3.0887 -1.2010 -0.0001 9 8 1.3345 -2.3686 -0.0005 10 6 2.0697 -3.5047 -0.1078 11 6 1.4361 -4.7349 -0.2256 12 6 2.1867 -5.8884 -0.3403 13 6 3.5680 -5.8204 -0.3269 14 6 4.3841 -7.0816 -0.4465 15 7 4.6414 -7.6252 0.8893 16 6 5.3582 -8.7580 1.0294 17 8 5.7898 -9.3276 0.0494 18 6 5.6224 -9.3175 2.4034 19 1 4.7561 -9.1570 3.0451 20 6 5.9404 -10.8250 2.3090 21 6 7.4882 -10.8862 2.2831 22 6 7.8924 -9.7629 3.2712 23 6 6.8617 -8.6487 3.0150 24 8 6.5186 -8.0070 4.2501 25 6 7.3576 -6.8268 4.2967 26 6 7.4032 -6.4121 2.8044 27 8 7.4000 -7.6787 2.1129 28 6 4.2019 -4.5974 -0.2036 29 6 3.4568 -3.4398 -0.0943 30 1 -0.4850 0.8401 0.0004 31 1 0.3575 -4.7890 -0.2315 32 1 1.6946 -6.8449 -0.4364 33 1 3.8354 -7.8148 -1.0376 34 1 5.3317 -6.8562 -0.9358 35 1 4.2960 -7.1699 1.6731 36 1 5.5525 -11.3521 3.1806 37 1 5.5267 -11.2455 1.3924 38 1 7.8663 -10.6749 1.2827 39 1 7.8452 -11.8548 2.6326 40 1 8.9000 -9.4081 3.0544 41 1 7.8259 -10.1150 4.3005 42 1 8.3544 -7.0711 4.6641 43 1 6.8998 -6.0465 4.9045 44 1 8.3155 -5.8566 2.5867 45 1 6.5239 -5.8255 2.5379 46 1 5.2807 -4.5476 -0.1930 47 1 3.9524 -2.4850 0.0016 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806771637.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:53 Heat of formation + Delta-G solvation = -130.028818 kcal Electronic energy + Delta-G solvation = -30776.213216 eV Core-core repulsion = 26503.602117 eV Total energy + Delta-G solvation = -4272.611098 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.39216 -39.49554 -38.98111 -37.01508 -36.25868 -35.32981 -34.30726 -32.38858 -30.62725 -30.27621 -30.04882 -29.14280 -26.85699 -25.83551 -24.69582 -23.60258 -22.07018 -21.94346 -21.13744 -20.62018 -19.78861 -18.09266 -17.73355 -17.42682 -17.02667 -16.84701 -15.88826 -15.77127 -15.42481 -15.03932 -14.65180 -14.52171 -14.36003 -14.22222 -14.02566 -13.69605 -13.58382 -13.45544 -13.18573 -12.92975 -12.81346 -12.80036 -12.53756 -12.23874 -12.03478 -11.70063 -11.64112 -11.52307 -11.37788 -11.35537 -10.99238 -10.96295 -10.79746 -10.70740 -10.50430 -10.46843 -9.94281 -9.69891 -9.44447 -8.92247 -8.87150 -8.29963 -7.33528 -6.54443 -4.13435 2.06534 2.11461 2.62488 3.05814 3.07720 3.11948 3.12535 3.48108 3.61724 3.88746 4.10897 4.19226 4.32575 4.48031 4.61466 4.70954 4.80007 4.94247 4.99945 5.04770 5.11082 5.16462 5.18556 5.24048 5.29007 5.35057 5.43675 5.46043 5.54883 5.55345 5.61215 5.65842 5.74919 5.81069 5.89711 5.96850 6.10578 6.11601 6.34054 6.57222 6.61066 6.79150 6.81781 6.94453 7.12918 7.26412 7.33625 7.65957 7.71479 7.90182 8.35385 8.90894 9.59227 10.63131 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.016984 B = 0.002392 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.166321 B =11702.894030 C =12713.259831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.394 4.394 8 H 0.093 0.907 9 O -0.174 6.174 10 C 0.160 3.840 11 C -0.195 4.195 12 C -0.055 4.055 13 C -0.213 4.213 14 C 0.181 3.819 15 N -0.718 5.718 16 C 0.536 3.464 17 O -0.540 6.540 18 C -0.123 4.123 19 H 0.108 0.892 20 C -0.105 4.105 21 C -0.118 4.118 22 C -0.143 4.143 23 C 0.267 3.733 24 O -0.368 6.368 25 C 0.016 3.984 26 C 0.016 3.984 27 O -0.363 6.363 28 C -0.051 4.051 29 C -0.237 4.237 30 H 0.271 0.729 31 H 0.118 0.882 32 H 0.112 0.888 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.399 0.601 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.112 0.888 44 H 0.101 0.899 45 H 0.082 0.918 46 H 0.107 0.893 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.495 -16.130 8.532 23.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.470 4.470 8 H 0.110 0.890 9 O -0.076 6.076 10 C 0.105 3.895 11 C -0.214 4.214 12 C -0.074 4.074 13 C -0.214 4.214 14 C 0.059 3.941 15 N -0.368 5.368 16 C 0.321 3.679 17 O -0.418 6.418 18 C -0.145 4.145 19 H 0.126 0.874 20 C -0.143 4.143 21 C -0.156 4.156 22 C -0.180 4.180 23 C 0.189 3.811 24 O -0.288 6.288 25 C -0.060 4.060 26 C -0.060 4.060 27 O -0.284 6.284 28 C -0.070 4.070 29 C -0.256 4.256 30 H 0.081 0.919 31 H 0.136 0.864 32 H 0.130 0.870 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.233 0.767 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.130 0.870 44 H 0.119 0.881 45 H 0.100 0.900 46 H 0.125 0.875 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 14.264 -16.411 7.770 23.090 hybrid contribution 0.347 1.440 0.519 1.570 sum 14.611 -14.971 8.289 22.501 Atomic orbital electron populations 1.70037 1.06006 1.27863 1.45455 1.25316 0.95860 0.98926 0.96365 0.85695 0.78904 0.79940 0.78814 1.19782 1.20187 1.19165 1.21346 0.91836 0.80735 1.53040 0.88962 1.83980 1.34492 1.11545 1.77609 1.19433 0.90318 0.88050 0.91652 1.20216 0.99667 0.90285 1.11239 1.20538 0.92783 0.96833 0.97206 1.19234 0.93562 0.93585 1.15012 1.19947 0.98433 0.92458 0.83304 1.46259 1.54714 1.25893 1.09977 1.19870 0.77429 0.80480 0.90076 1.90652 1.50980 1.59948 1.40186 1.22277 0.98923 0.97677 0.95660 0.87405 1.22240 0.96764 0.92164 1.03093 1.22433 0.95298 0.97847 0.99987 1.22949 0.98822 0.95382 1.00896 1.23603 0.90971 0.88636 0.77873 1.89251 1.62266 1.38771 1.38513 1.24433 0.96184 0.87997 0.97423 1.24297 1.04042 0.87099 0.90543 1.88993 1.84093 1.17361 1.37952 1.20625 0.98295 0.91673 0.96404 1.21146 0.93774 0.98899 1.11797 0.91875 0.86388 0.86972 0.91681 0.91659 0.76742 0.90658 0.89666 0.90212 0.90904 0.90194 0.89514 0.90558 0.87041 0.88122 0.90013 0.87516 0.85472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.57 13.67 55.48 0.76 -23.82 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 19.88 29.55 -169.99 -5.02 14.86 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.39 -10.63 9.49 30.89 0.29 -10.33 16 8 H 0.09 2.29 5.21 -52.48 -0.27 2.02 16 9 O -0.17 -4.79 9.76 0.04 0.00 -4.79 16 10 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 11 C -0.19 -3.91 9.99 -39.39 -0.39 -4.30 16 12 C -0.05 -0.92 9.69 -39.61 -0.38 -1.31 16 13 C -0.21 -3.42 5.25 -104.57 -0.55 -3.97 16 14 C 0.18 2.61 5.80 -5.19 -0.03 2.58 16 15 N -0.72 -9.45 5.55 -61.48 -0.34 -9.79 16 16 C 0.54 7.40 5.63 -10.99 -0.06 7.34 16 17 O -0.54 -9.15 15.83 5.56 0.09 -9.07 16 18 C -0.12 -1.37 3.11 -90.79 -0.28 -1.65 16 19 H 0.11 1.08 7.96 -51.93 -0.41 0.66 16 20 C -0.10 -1.01 6.05 -25.01 -0.15 -1.16 16 21 C -0.12 -1.09 6.91 -24.68 -0.17 -1.26 16 22 C -0.14 -1.29 6.28 -25.21 -0.16 -1.45 16 23 C 0.27 2.86 1.34 -25.97 -0.03 2.82 16 24 O -0.37 -3.79 10.89 -59.03 -0.64 -4.43 16 25 C 0.02 0.12 7.94 38.19 0.30 0.43 16 26 C 0.02 0.15 8.08 38.19 0.31 0.46 16 27 O -0.36 -4.37 9.34 -59.03 -0.55 -4.92 16 28 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 29 C -0.24 -4.85 9.17 -39.40 -0.36 -5.21 16 30 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 32 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 34 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 35 H 0.40 4.85 8.46 -40.82 -0.35 4.50 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.92 7.28 -51.93 -0.38 0.55 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.70 8.06 -51.93 -0.42 0.29 16 41 H 0.09 0.68 8.07 -51.93 -0.42 0.26 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 47 H 0.13 2.62 5.64 -52.49 -0.30 2.32 16 LS Contribution 388.80 15.07 5.86 5.86 Total: -1.00 -32.08 388.80 -9.01 -41.09 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -6.75 Total: 8.87 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -2.41 Total: -13.87 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: 0.42 Total: -33.61 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -1.11 Total: -23.20 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.08 -9.01 -41.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806771637.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.934 kcal (2) G-P(sol) polarization free energy of solvation -32.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds