Wall clock time and date at job start Wed Apr 1 2020 04:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86795 * 120.00310 * 2 1 4 4 H 1.48501 * 109.47129 * 269.99936 * 3 2 1 5 5 H 1.48491 * 109.47340 * 30.00082 * 3 2 1 6 6 H 1.48498 * 109.47060 * 149.99957 * 3 2 1 7 7 C 1.38654 * 119.99344 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00009 * 180.02562 * 7 2 1 9 9 O 1.34834 * 120.00579 * 359.97438 * 7 2 1 10 10 C 1.35748 * 117.00023 * 174.93940 * 9 7 2 11 11 C 1.38881 * 120.06474 * 185.31940 * 10 9 7 12 12 C 1.38103 * 119.92946 * 179.72101 * 11 10 9 13 13 C 1.38302 * 120.06656 * 0.53039 * 12 11 10 14 14 C 1.50703 * 119.92975 * 179.74364 * 13 12 11 15 15 N 1.46496 * 109.46977 * 270.02295 * 14 13 12 16 16 C 1.34782 * 120.00126 * 180.02562 * 15 14 13 17 17 O 1.21280 * 119.99703 * 359.97438 * 16 15 14 18 18 C 1.50692 * 120.00098 * 180.02562 * 16 15 14 19 19 H 1.08998 * 110.04615 * 36.17724 * 18 16 15 20 20 C 1.54360 * 110.05476 * 157.68461 * 18 16 15 21 21 C 1.54919 * 104.20640 * 95.69652 * 20 18 16 22 22 C 1.54970 * 102.78637 * 37.75176 * 21 20 18 23 23 C 1.53536 * 110.05882 * 274.71985 * 18 16 15 24 24 O 1.43356 * 110.18002 * 121.38227 * 23 18 16 25 25 C 1.44877 * 104.69902 * 214.57033 * 24 23 18 26 26 C 1.54947 * 101.77808 * 35.72076 * 25 24 23 27 27 O 1.42982 * 110.37163 * 0.62154 * 23 18 16 28 28 C 1.38302 * 120.13780 * 359.76688 * 13 12 11 29 29 C 1.38098 * 120.07051 * 359.95364 * 28 13 12 30 30 H 0.97008 * 119.99912 * 359.97438 * 1 2 3 31 31 H 1.07997 * 120.03394 * 359.97438 * 11 10 9 32 32 H 1.08000 * 119.96573 * 180.27549 * 12 11 10 33 33 H 1.09001 * 109.47092 * 30.02120 * 14 13 12 34 34 H 1.08998 * 109.47078 * 150.02245 * 14 13 12 35 35 H 0.97000 * 120.00268 * 0.02562 * 15 14 13 36 36 H 1.09000 * 110.48578 * 214.37398 * 20 18 16 37 37 H 1.08997 * 110.48747 * 337.01124 * 20 18 16 38 38 H 1.09006 * 110.74759 * 279.43099 * 21 20 18 39 39 H 1.08994 * 110.91075 * 156.15073 * 21 20 18 40 40 H 1.09001 * 110.49799 * 203.68281 * 22 21 20 41 41 H 1.08994 * 110.61524 * 81.05557 * 22 21 20 42 42 H 1.09005 * 110.96831 * 277.60388 * 25 24 23 43 43 H 1.08998 * 110.96904 * 153.84235 * 25 24 23 44 44 H 1.09004 * 110.69595 * 206.26851 * 26 25 24 45 45 H 1.09007 * 110.83914 * 83.13822 * 26 25 24 46 46 H 1.08002 * 119.96001 * 179.97438 * 28 13 12 47 47 H 1.07995 * 120.03266 * 180.02562 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4472 2.6526 0.7000 6 1 3.5471 1.4400 0.7000 7 6 2.0087 -1.2009 -0.0005 8 1 3.0887 -1.2010 -0.0001 9 8 1.3345 -2.3686 -0.0005 10 6 2.0697 -3.5047 -0.1078 11 6 1.4361 -4.7349 -0.2256 12 6 2.1867 -5.8884 -0.3403 13 6 3.5680 -5.8204 -0.3269 14 6 4.3841 -7.0816 -0.4465 15 7 4.6414 -7.6252 0.8893 16 6 5.3582 -8.7580 1.0294 17 8 5.7898 -9.3276 0.0494 18 6 5.6224 -9.3175 2.4034 19 1 4.7561 -9.1570 3.0451 20 6 5.9404 -10.8250 2.3090 21 6 7.4882 -10.8862 2.2831 22 6 7.8924 -9.7629 3.2712 23 6 6.8617 -8.6487 3.0150 24 8 6.5186 -8.0070 4.2501 25 6 7.3576 -6.8268 4.2967 26 6 7.4032 -6.4121 2.8044 27 8 7.4000 -7.6787 2.1129 28 6 4.2019 -4.5974 -0.2036 29 6 3.4568 -3.4398 -0.0943 30 1 -0.4850 0.8401 0.0004 31 1 0.3575 -4.7890 -0.2315 32 1 1.6946 -6.8449 -0.4364 33 1 3.8354 -7.8148 -1.0376 34 1 5.3317 -6.8562 -0.9358 35 1 4.2960 -7.1699 1.6731 36 1 5.5525 -11.3521 3.1806 37 1 5.5267 -11.2455 1.3924 38 1 7.8663 -10.6749 1.2827 39 1 7.8452 -11.8548 2.6326 40 1 8.9000 -9.4081 3.0544 41 1 7.8259 -10.1150 4.3005 42 1 8.3544 -7.0711 4.6641 43 1 6.8998 -6.0465 4.9045 44 1 8.3155 -5.8566 2.5867 45 1 6.5239 -5.8255 2.5379 46 1 5.2807 -4.5476 -0.1930 47 1 3.9524 -2.4850 0.0016 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806771637.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:52 Heat of formation + Delta-G solvation = -151.168292 kcal Electronic energy + Delta-G solvation = -30777.129892 eV Core-core repulsion = 26503.602117 eV Total energy + Delta-G solvation = -4273.527775 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.19725 -40.91778 -40.27513 -38.56095 -37.16319 -36.09700 -35.59146 -34.28205 -31.91790 -31.75458 -30.79767 -30.17876 -27.81312 -27.43090 -26.14513 -24.27295 -23.66093 -22.96509 -22.09166 -21.87500 -20.79313 -19.87826 -18.94140 -18.54620 -18.18036 -17.63430 -16.93406 -16.69261 -16.53589 -16.32623 -16.25169 -15.80061 -15.60738 -15.48158 -15.21582 -14.92527 -14.86609 -14.56551 -14.38009 -14.18875 -13.92473 -13.68812 -13.62637 -13.47107 -13.19201 -13.06097 -12.96490 -12.58144 -12.37708 -12.33417 -12.26644 -12.15851 -12.10948 -12.08091 -11.73744 -11.21802 -11.17389 -10.92962 -10.77471 -10.62246 -10.03894 -9.82689 -9.02079 -8.48828 -6.17092 0.53036 0.55927 1.35587 1.44018 1.52611 1.59944 2.16544 2.20178 2.54307 2.83141 2.87372 3.15869 3.35508 3.45895 3.47945 3.67042 3.79908 3.93146 4.00682 4.02350 4.10410 4.15601 4.23134 4.30789 4.39513 4.43214 4.50591 4.54954 4.58788 4.64294 4.74061 4.78172 4.79006 4.86592 4.88484 4.95172 5.02413 5.09688 5.13303 5.14927 5.24697 5.38271 5.45268 5.51471 5.67442 5.73835 6.00594 6.09073 6.13890 6.57968 6.95986 7.26942 7.75021 8.74004 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.016984 B = 0.002392 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.166321 B =11702.894030 C =12713.259831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.251 1.251 7 C -0.413 4.413 8 H 0.104 0.896 9 O -0.228 6.228 10 C 0.123 3.877 11 C -0.204 4.204 12 C -0.045 4.045 13 C -0.182 4.182 14 C 0.187 3.813 15 N -0.712 5.712 16 C 0.537 3.463 17 O -0.574 6.574 18 C -0.125 4.125 19 H 0.119 0.881 20 C -0.104 4.104 21 C -0.116 4.116 22 C -0.138 4.138 23 C 0.263 3.737 24 O -0.379 6.379 25 C 0.016 3.984 26 C 0.010 3.990 27 O -0.388 6.388 28 C -0.045 4.045 29 C -0.241 4.241 30 H 0.273 0.727 31 H 0.115 0.885 32 H 0.146 0.854 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.406 0.594 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.128 0.872 44 H 0.116 0.884 45 H 0.073 0.927 46 H 0.136 0.864 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.976 -17.748 9.701 26.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.219 4.219 3 Si 0.837 3.163 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.174 1.174 7 C -0.489 4.489 8 H 0.121 0.879 9 O -0.134 6.134 10 C 0.072 3.928 11 C -0.223 4.223 12 C -0.063 4.063 13 C -0.183 4.183 14 C 0.064 3.936 15 N -0.363 5.363 16 C 0.324 3.676 17 O -0.453 6.453 18 C -0.147 4.147 19 H 0.137 0.863 20 C -0.142 4.142 21 C -0.154 4.154 22 C -0.176 4.176 23 C 0.186 3.814 24 O -0.299 6.299 25 C -0.059 4.059 26 C -0.066 4.066 27 O -0.309 6.309 28 C -0.063 4.063 29 C -0.260 4.260 30 H 0.082 0.918 31 H 0.134 0.866 32 H 0.164 0.836 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.241 0.759 36 H 0.118 0.882 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.114 0.886 40 H 0.099 0.901 41 H 0.121 0.879 42 H 0.111 0.889 43 H 0.145 0.855 44 H 0.134 0.866 45 H 0.091 0.909 46 H 0.154 0.846 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 16.777 -18.076 8.956 26.237 hybrid contribution -0.292 1.592 0.130 1.623 sum 16.485 -16.484 9.086 25.021 Atomic orbital electron populations 1.70181 1.08049 1.28870 1.48573 1.26583 0.96819 1.02759 0.95784 0.84597 0.77920 0.74599 0.79199 1.18996 1.19679 1.17421 1.21832 0.92569 0.81312 1.53226 0.87877 1.83952 1.36045 1.12647 1.80797 1.19973 0.91622 0.87934 0.93252 1.20440 1.00074 0.90416 1.11347 1.20867 0.93026 0.97027 0.95374 1.19489 0.93477 0.94073 1.11254 1.19830 0.98046 0.91490 0.84188 1.46117 1.54668 1.25905 1.09599 1.20319 0.76468 0.79970 0.90853 1.90642 1.52237 1.60881 1.41584 1.22359 0.99879 0.98534 0.93932 0.86263 1.22284 0.97101 0.91320 1.03448 1.22409 0.94974 0.99179 0.98819 1.22950 0.98360 0.94645 1.01627 1.23700 0.90960 0.88873 0.77894 1.89228 1.63014 1.39572 1.38113 1.24613 0.97000 0.87601 0.96719 1.24450 1.04472 0.86282 0.91381 1.88975 1.84231 1.18563 1.39161 1.20890 0.99632 0.90769 0.95056 1.21219 0.92963 0.99964 1.11866 0.91798 0.86645 0.83623 0.91062 0.91749 0.75937 0.88173 0.91181 0.92752 0.88608 0.90117 0.87919 0.88871 0.85456 0.86568 0.90877 0.84619 0.86069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.28 13.67 21.61 0.30 -54.98 16 2 C -0.02 -1.19 5.49 84.83 0.47 -0.73 16 3 Si 1.02 41.58 29.55 68.60 2.03 43.61 16 4 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 6 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 7 C -0.41 -23.29 9.49 67.92 0.64 -22.64 16 8 H 0.10 5.29 5.21 -2.91 -0.02 5.27 16 9 O -0.23 -13.29 9.76 -22.76 -0.22 -13.51 16 10 C 0.12 5.84 6.65 22.58 0.15 5.99 16 11 C -0.20 -8.19 9.99 22.39 0.22 -7.97 16 12 C -0.04 -1.40 9.69 22.25 0.22 -1.18 16 13 C -0.18 -5.36 5.25 -19.83 -0.10 -5.46 16 14 C 0.19 4.86 5.80 85.63 0.50 5.36 16 15 N -0.71 -16.97 5.55 -466.79 -2.59 -19.56 16 16 C 0.54 13.82 5.63 87.65 0.49 14.32 16 17 O -0.57 -18.74 15.83 -3.03 -0.05 -18.78 16 18 C -0.13 -2.50 3.11 -10.90 -0.03 -2.54 16 19 H 0.12 2.07 7.96 -2.39 -0.02 2.05 16 20 C -0.10 -1.78 6.05 31.71 0.19 -1.59 16 21 C -0.12 -1.90 6.91 31.92 0.22 -1.68 16 22 C -0.14 -2.15 6.28 31.58 0.20 -1.95 16 23 C 0.26 5.03 1.34 31.09 0.04 5.07 16 24 O -0.38 -6.77 10.89 -126.22 -1.37 -8.14 16 25 C 0.02 0.21 7.94 72.65 0.58 0.78 16 26 C 0.01 0.16 8.08 72.65 0.59 0.75 16 27 O -0.39 -8.61 9.34 -126.22 -1.18 -9.78 16 28 C -0.04 -1.45 9.69 22.25 0.22 -1.23 16 29 C -0.24 -9.83 9.17 22.39 0.21 -9.63 16 30 H 0.27 15.05 8.31 -92.70 -0.77 14.27 16 31 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 32 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 33 H 0.07 1.84 8.08 -2.39 -0.02 1.82 16 34 H 0.06 1.76 8.08 -2.39 -0.02 1.74 16 35 H 0.41 8.77 8.46 -92.71 -0.78 7.98 16 36 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.07 1.43 7.28 -2.39 -0.02 1.41 16 38 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.08 1.25 8.06 -2.39 -0.02 1.23 16 41 H 0.10 1.27 8.07 -2.39 -0.02 1.25 16 42 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 43 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.12 1.43 8.14 -2.38 -0.02 1.41 16 45 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 46 H 0.14 3.63 8.06 -2.91 -0.02 3.60 16 47 H 0.12 5.04 5.64 -2.91 -0.02 5.02 16 Total: -1.00 -73.80 388.80 1.91 -71.89 By element: Atomic # 1 Polarization: 33.39 SS G_CDS: 0.21 Total: 33.60 kcal Atomic # 6 Polarization: -29.13 SS G_CDS: 4.79 Total: -24.34 kcal Atomic # 7 Polarization: -72.24 SS G_CDS: -2.29 Total: -74.54 kcal Atomic # 8 Polarization: -47.40 SS G_CDS: -2.82 Total: -50.22 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Total: -73.80 1.91 -71.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806771637.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.278 kcal (2) G-P(sol) polarization free energy of solvation -73.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds