Wall clock time and date at job start Wed Apr 1 2020 04:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99680 * 2 1 4 4 H 1.48502 * 109.47235 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47002 * 120.00160 * 3 2 1 6 6 H 1.48498 * 109.47165 * 240.00162 * 3 2 1 7 7 C 1.37871 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99889 * 181.78073 * 7 2 1 9 9 C 1.50698 * 120.00320 * 1.78465 * 7 2 1 10 10 O 1.45209 * 112.84767 * 298.52927 * 9 7 2 11 11 C 1.34231 * 116.99630 * 294.87811 * 10 9 7 12 12 O 1.20826 * 120.00310 * 3.01465 * 11 10 9 13 13 C 1.50695 * 119.99926 * 183.01797 * 11 10 9 14 14 O 1.42904 * 109.47172 * 179.97438 * 13 11 10 15 15 C 1.42904 * 113.99964 * 180.02562 * 14 13 11 16 16 C 1.52992 * 109.47301 * 180.02562 * 15 14 13 17 17 N 1.46497 * 109.47508 * 64.99487 * 16 15 14 18 18 C 1.34780 * 120.00553 * 179.97438 * 17 16 15 19 19 O 1.21551 * 119.99445 * 0.02562 * 18 17 16 20 20 C 1.47842 * 120.00100 * 180.02562 * 18 17 16 21 21 C 1.39574 * 120.14464 * 359.72725 * 20 18 17 22 22 C 1.37963 * 119.85012 * 179.74595 * 21 20 18 23 23 C 1.38357 * 120.14374 * 0.52958 * 22 21 20 24 24 C 1.38352 * 120.29589 * 359.74447 * 23 22 21 25 25 C 1.37961 * 120.14172 * 359.97438 * 24 23 22 26 26 C 1.53778 * 113.61790 * 167.33510 * 9 7 2 27 27 C 1.53965 * 87.01865 * 220.04393 * 26 9 7 28 28 C 1.53782 * 113.61786 * 69.71800 * 9 7 2 29 29 H 0.97005 * 119.99716 * 175.05261 * 1 2 3 30 30 H 1.09002 * 109.47295 * 300.00250 * 13 11 10 31 31 H 1.09002 * 109.47553 * 60.00124 * 13 11 10 32 32 H 1.08998 * 109.47020 * 300.00071 * 15 14 13 33 33 H 1.09001 * 109.47252 * 59.99778 * 15 14 13 34 34 H 1.09002 * 109.47677 * 185.00136 * 16 15 14 35 35 H 1.09005 * 109.47118 * 305.00075 * 16 15 14 36 36 H 0.97008 * 119.99411 * 0.02562 * 17 16 15 37 37 H 1.07997 * 120.07766 * 0.02562 * 21 20 18 38 38 H 1.08003 * 119.92758 * 180.28034 * 22 21 20 39 39 H 1.08007 * 119.85031 * 179.72296 * 23 22 21 40 40 H 1.08000 * 119.92832 * 179.97438 * 24 23 22 41 41 H 1.08003 * 120.07218 * 179.97438 * 25 24 23 42 42 H 1.09003 * 113.61463 * 334.56002 * 26 9 7 43 43 H 1.08998 * 113.61742 * 105.46749 * 26 9 7 44 44 H 1.08997 * 113.53497 * 270.81080 * 27 26 9 45 45 H 1.09004 * 113.74018 * 139.93945 * 27 26 9 46 46 H 1.08989 * 113.61692 * 254.53434 * 28 9 7 47 47 H 1.08997 * 113.60746 * 25.35640 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0841 -1.1942 0.0285 9 6 1.2517 -2.4988 -0.0418 10 8 0.3849 -2.6862 1.1081 11 6 0.9789 -2.8045 2.3060 12 8 2.1789 -2.6987 2.3984 13 6 0.1489 -3.0692 3.5357 14 8 1.0034 -3.1539 4.6779 15 6 0.3124 -3.4049 5.9034 16 6 1.3204 -3.4746 7.0522 17 7 1.9544 -2.1654 7.2258 18 6 2.8827 -1.9882 8.1868 19 8 3.1942 -2.9149 8.9090 20 6 3.5221 -0.6668 8.3622 21 6 3.1708 0.3978 7.5308 22 6 3.7675 1.6297 7.7033 23 6 4.7201 1.8081 8.6907 24 6 5.0770 0.7555 9.5146 25 6 4.4838 -0.4800 9.3564 26 6 2.1425 -3.7147 -0.3463 27 6 0.9944 -4.2328 -1.2317 28 6 0.5566 -2.7668 -1.3871 29 1 -0.4850 -0.8370 -0.0725 30 1 -0.5644 -2.2568 3.6745 31 1 -0.3899 -4.0090 3.4150 32 1 -0.3974 -2.5994 6.0917 33 1 -0.2230 -4.3515 5.8313 34 1 0.8051 -3.7535 7.9714 35 1 2.0822 -4.2196 6.8224 36 1 1.7055 -1.4258 6.6496 37 1 2.4303 0.2588 6.7571 38 1 3.4933 2.4556 7.0636 39 1 5.1875 2.7734 8.8187 40 1 5.8216 0.9013 10.2832 41 1 4.7636 -1.3010 9.9999 42 1 3.0455 -3.4658 -0.9037 43 1 2.3401 -4.3402 0.5242 44 1 0.2739 -4.8489 -0.6937 45 1 1.3300 -4.6894 -2.1628 46 1 -0.5240 -2.6282 -1.3556 47 1 1.0244 -2.2570 -2.2293 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810857962.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:49 Heat of formation + Delta-G solvation = -116.760573 kcal Electronic energy + Delta-G solvation = -30160.795411 eV Core-core repulsion = 25888.759667 eV Total energy + Delta-G solvation = -4272.035744 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.30755 -39.69668 -38.57648 -38.02811 -36.85916 -34.86476 -34.26781 -32.45509 -31.79508 -31.13077 -29.76143 -27.68184 -25.93926 -24.78423 -24.29831 -22.91810 -22.71649 -22.22741 -20.69646 -20.58181 -18.50493 -18.29501 -17.53318 -16.84706 -16.72649 -16.34877 -16.05729 -15.76875 -15.36801 -15.15001 -14.96315 -14.78186 -14.55660 -13.95442 -13.82613 -13.78427 -13.72074 -13.42683 -13.19173 -12.83587 -12.61542 -12.40888 -12.18675 -11.90587 -11.83341 -11.50503 -11.38898 -11.28272 -10.88324 -10.58626 -10.44971 -10.23955 -10.15598 -10.09741 -10.07004 -9.76412 -9.41497 -9.33480 -9.20613 -9.06984 -9.04710 -8.52030 -8.21143 -6.44720 -4.22674 0.66599 1.15635 2.74153 2.94385 3.05017 3.25178 3.39251 3.41454 3.59475 3.71003 4.17455 4.45172 4.51868 4.60949 4.73459 4.78148 4.88921 4.94978 5.11463 5.15783 5.22550 5.26171 5.28192 5.36744 5.41146 5.46562 5.51219 5.57654 5.64506 5.70371 5.76697 5.89135 6.10109 6.16996 6.21224 6.22451 6.25955 6.26647 6.62648 6.65002 6.65896 6.80404 6.95554 7.03379 7.30626 7.36431 7.63880 8.07472 8.08838 8.36752 8.75860 8.97720 9.53147 10.93103 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.010370 B = 0.002895 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2699.320451 B = 9668.699339 C =11616.311022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.032 3.968 3 Si 1.064 2.936 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.285 1.285 7 C -0.592 4.592 8 H 0.059 0.941 9 C 0.214 3.786 10 O -0.355 6.355 11 C 0.461 3.539 12 O -0.480 6.480 13 C 0.067 3.933 14 O -0.363 6.363 15 C 0.046 3.954 16 C 0.125 3.875 17 N -0.718 5.718 18 C 0.560 3.440 19 O -0.544 6.544 20 C -0.135 4.135 21 C -0.082 4.082 22 C -0.126 4.126 23 C -0.095 4.095 24 C -0.131 4.131 25 C -0.062 4.062 26 C -0.145 4.145 27 C -0.149 4.149 28 C -0.110 4.110 29 H 0.279 0.721 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.406 0.594 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.135 0.865 42 H 0.082 0.918 43 H 0.053 0.947 44 H 0.069 0.931 45 H 0.056 0.944 46 H 0.058 0.942 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.257 -1.245 14.575 14.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.176 4.176 3 Si 0.891 3.109 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.211 1.211 7 C -0.630 4.630 8 H 0.077 0.923 9 C 0.180 3.820 10 O -0.273 6.273 11 C 0.301 3.699 12 O -0.366 6.366 13 C -0.010 4.010 14 O -0.282 6.282 15 C -0.031 4.031 16 C 0.001 3.999 17 N -0.371 5.371 18 C 0.348 3.652 19 O -0.423 6.423 20 C -0.138 4.138 21 C -0.101 4.101 22 C -0.144 4.144 23 C -0.114 4.114 24 C -0.149 4.149 25 C -0.081 4.081 26 C -0.183 4.183 27 C -0.186 4.186 28 C -0.147 4.147 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.243 0.757 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.153 0.847 42 H 0.101 0.899 43 H 0.072 0.928 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.828 -0.246 15.094 15.119 hybrid contribution -0.149 -1.309 -0.414 1.381 sum 0.679 -1.555 14.680 14.777 Atomic orbital electron populations 1.70710 1.06750 1.31983 1.43369 1.25848 0.96501 1.02543 0.92663 0.83630 0.75075 0.75272 0.76895 1.20676 1.21292 1.21144 1.22056 0.94499 0.90424 1.55989 0.92272 1.20889 0.86885 0.93983 0.80222 1.86351 1.44059 1.81483 1.15385 1.22340 0.87565 0.75181 0.84825 1.90614 1.15805 1.43540 1.86598 1.21812 0.92218 1.02605 0.84412 1.88023 1.32862 1.93191 1.14086 1.22829 0.94699 1.01263 0.84298 1.21393 0.96171 0.85724 0.96569 1.45848 1.41622 1.13963 1.35632 1.18271 0.78948 0.87939 0.80079 1.90752 1.62994 1.42806 1.45699 1.19946 1.00719 0.93609 0.99554 1.21419 0.98698 0.92588 0.97379 1.21185 0.97165 0.97425 0.98608 1.21401 0.96297 0.99087 0.94575 1.21157 1.00641 0.92861 1.00261 1.21273 0.93429 0.97551 0.95810 1.23362 0.97605 0.98478 0.98818 1.22997 0.98997 0.97279 0.99369 1.22966 1.00066 0.94078 0.97616 0.90940 0.89664 0.90051 0.92191 0.91122 0.89613 0.90166 0.75744 0.85351 0.85115 0.85550 0.85365 0.84728 0.89948 0.92823 0.91245 0.92534 0.92277 0.89283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 13.51 55.43 0.75 -24.77 16 2 C 0.03 0.89 5.40 -17.82 -0.10 0.79 16 3 Si 1.06 24.76 29.90 -169.99 -5.08 19.68 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.59 -16.46 7.35 -34.44 -0.25 -16.71 16 8 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.21 5.26 0.11 -90.96 -0.01 5.25 16 10 O -0.36 -8.49 9.10 -39.26 -0.36 -8.85 16 11 C 0.46 10.35 7.42 36.00 0.27 10.62 16 12 O -0.48 -12.41 14.60 -25.48 -0.37 -12.78 16 13 C 0.07 1.08 6.53 36.00 0.24 1.32 16 14 O -0.36 -5.68 9.82 -55.19 -0.54 -6.22 16 15 C 0.05 0.48 6.07 37.15 0.23 0.71 16 16 C 0.12 1.40 6.06 -4.05 -0.02 1.38 16 17 N -0.72 -8.92 5.45 -61.25 -0.33 -9.25 16 18 C 0.56 7.87 7.77 -12.33 -0.10 7.77 16 19 O -0.54 -9.09 16.35 5.32 0.09 -9.00 16 20 C -0.14 -1.69 5.87 -104.97 -0.62 -2.30 16 21 C -0.08 -0.92 9.54 -39.18 -0.37 -1.29 16 22 C -0.13 -1.25 10.03 -39.64 -0.40 -1.64 16 23 C -0.10 -0.85 10.04 -39.50 -0.40 -1.24 16 24 C -0.13 -1.21 10.03 -39.64 -0.40 -1.60 16 25 C -0.06 -0.70 9.60 -39.19 -0.38 -1.07 16 26 C -0.14 -3.18 6.90 -25.82 -0.18 -3.35 16 27 C -0.15 -2.81 8.03 -25.82 -0.21 -3.02 16 28 C -0.11 -2.39 6.67 -25.92 -0.17 -2.56 16 29 H 0.28 7.90 5.76 -40.82 -0.24 7.67 16 30 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.41 4.67 6.51 -40.82 -0.27 4.41 16 37 H 0.13 1.31 6.41 -52.49 -0.34 0.97 16 38 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 39 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 40 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.13 1.48 7.65 -52.48 -0.40 1.08 16 42 H 0.08 1.79 8.09 -51.93 -0.42 1.37 16 43 H 0.05 1.19 7.32 -51.93 -0.38 0.81 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.06 1.28 7.77 -51.94 -0.40 0.88 16 47 H 0.09 1.95 8.09 -51.93 -0.42 1.53 16 LS Contribution 398.21 15.07 6.00 6.00 Total: -1.00 -35.40 398.21 -9.44 -44.84 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -6.72 Total: 7.32 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -2.87 Total: -6.96 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: 0.41 Total: -34.02 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -1.18 Total: -36.86 kcal Atomic # 14 Polarization: 24.76 SS G_CDS: -5.08 Total: 19.68 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.40 -9.44 -44.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857962.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.925 kcal (2) G-P(sol) polarization free energy of solvation -35.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds