Wall clock time and date at job start Wed Apr 1 2020 04:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99680 * 2 1 4 4 H 1.48502 * 109.47235 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47002 * 120.00160 * 3 2 1 6 6 H 1.48498 * 109.47165 * 240.00162 * 3 2 1 7 7 C 1.37871 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99889 * 181.78073 * 7 2 1 9 9 C 1.50698 * 120.00320 * 1.78465 * 7 2 1 10 10 O 1.45209 * 112.84767 * 298.52927 * 9 7 2 11 11 C 1.34231 * 116.99630 * 294.87811 * 10 9 7 12 12 O 1.20826 * 120.00310 * 3.01465 * 11 10 9 13 13 C 1.50695 * 119.99926 * 183.01797 * 11 10 9 14 14 O 1.42904 * 109.47172 * 179.97438 * 13 11 10 15 15 C 1.42904 * 113.99964 * 180.02562 * 14 13 11 16 16 C 1.52992 * 109.47301 * 180.02562 * 15 14 13 17 17 N 1.46497 * 109.47508 * 64.99487 * 16 15 14 18 18 C 1.34780 * 120.00553 * 179.97438 * 17 16 15 19 19 O 1.21551 * 119.99445 * 0.02562 * 18 17 16 20 20 C 1.47842 * 120.00100 * 180.02562 * 18 17 16 21 21 C 1.39574 * 120.14464 * 359.72725 * 20 18 17 22 22 C 1.37963 * 119.85012 * 179.74595 * 21 20 18 23 23 C 1.38357 * 120.14374 * 0.52958 * 22 21 20 24 24 C 1.38352 * 120.29589 * 359.74447 * 23 22 21 25 25 C 1.37961 * 120.14172 * 359.97438 * 24 23 22 26 26 C 1.53778 * 113.61790 * 167.33510 * 9 7 2 27 27 C 1.53965 * 87.01865 * 220.04393 * 26 9 7 28 28 C 1.53782 * 113.61786 * 69.71800 * 9 7 2 29 29 H 0.97005 * 119.99716 * 175.05261 * 1 2 3 30 30 H 1.09002 * 109.47295 * 300.00250 * 13 11 10 31 31 H 1.09002 * 109.47553 * 60.00124 * 13 11 10 32 32 H 1.08998 * 109.47020 * 300.00071 * 15 14 13 33 33 H 1.09001 * 109.47252 * 59.99778 * 15 14 13 34 34 H 1.09002 * 109.47677 * 185.00136 * 16 15 14 35 35 H 1.09005 * 109.47118 * 305.00075 * 16 15 14 36 36 H 0.97008 * 119.99411 * 0.02562 * 17 16 15 37 37 H 1.07997 * 120.07766 * 0.02562 * 21 20 18 38 38 H 1.08003 * 119.92758 * 180.28034 * 22 21 20 39 39 H 1.08007 * 119.85031 * 179.72296 * 23 22 21 40 40 H 1.08000 * 119.92832 * 179.97438 * 24 23 22 41 41 H 1.08003 * 120.07218 * 179.97438 * 25 24 23 42 42 H 1.09003 * 113.61463 * 334.56002 * 26 9 7 43 43 H 1.08998 * 113.61742 * 105.46749 * 26 9 7 44 44 H 1.08997 * 113.53497 * 270.81080 * 27 26 9 45 45 H 1.09004 * 113.74018 * 139.93945 * 27 26 9 46 46 H 1.08989 * 113.61692 * 254.53434 * 28 9 7 47 47 H 1.08997 * 113.60746 * 25.35640 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0841 -1.1942 0.0285 9 6 1.2517 -2.4988 -0.0418 10 8 0.3849 -2.6862 1.1081 11 6 0.9789 -2.8045 2.3060 12 8 2.1789 -2.6987 2.3984 13 6 0.1489 -3.0692 3.5357 14 8 1.0034 -3.1539 4.6779 15 6 0.3124 -3.4049 5.9034 16 6 1.3204 -3.4746 7.0522 17 7 1.9544 -2.1654 7.2258 18 6 2.8827 -1.9882 8.1868 19 8 3.1942 -2.9149 8.9090 20 6 3.5221 -0.6668 8.3622 21 6 3.1708 0.3978 7.5308 22 6 3.7675 1.6297 7.7033 23 6 4.7201 1.8081 8.6907 24 6 5.0770 0.7555 9.5146 25 6 4.4838 -0.4800 9.3564 26 6 2.1425 -3.7147 -0.3463 27 6 0.9944 -4.2328 -1.2317 28 6 0.5566 -2.7668 -1.3871 29 1 -0.4850 -0.8370 -0.0725 30 1 -0.5644 -2.2568 3.6745 31 1 -0.3899 -4.0090 3.4150 32 1 -0.3974 -2.5994 6.0917 33 1 -0.2230 -4.3515 5.8313 34 1 0.8051 -3.7535 7.9714 35 1 2.0822 -4.2196 6.8224 36 1 1.7055 -1.4258 6.6496 37 1 2.4303 0.2588 6.7571 38 1 3.4933 2.4556 7.0636 39 1 5.1875 2.7734 8.8187 40 1 5.8216 0.9013 10.2832 41 1 4.7636 -1.3010 9.9999 42 1 3.0455 -3.4658 -0.9037 43 1 2.3401 -4.3402 0.5242 44 1 0.2739 -4.8489 -0.6937 45 1 1.3300 -4.6894 -2.1628 46 1 -0.5240 -2.6282 -1.3556 47 1 1.0244 -2.2570 -2.2293 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810857962.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:49 Heat of formation + Delta-G solvation = -138.480997 kcal Electronic energy + Delta-G solvation = -30161.737279 eV Core-core repulsion = 25888.759667 eV Total energy + Delta-G solvation = -4272.977612 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.47687 -41.26201 -39.64499 -39.20603 -38.40819 -36.13669 -35.90310 -34.52565 -32.66437 -31.92250 -30.78918 -28.99379 -27.85666 -26.53877 -25.19548 -24.56042 -23.73518 -23.08201 -22.31469 -21.58458 -20.27921 -19.49042 -19.18230 -18.05256 -17.79956 -17.76437 -17.20285 -17.05179 -16.83360 -16.40747 -16.11309 -15.95138 -15.69626 -15.58503 -15.33154 -15.28056 -14.71547 -14.51968 -14.41079 -14.23088 -14.03775 -13.60095 -13.42423 -13.25157 -13.12719 -12.74751 -12.65664 -12.46487 -12.36169 -12.26406 -12.05907 -12.03523 -11.92760 -11.83146 -11.19538 -11.18285 -10.90707 -10.80498 -10.55596 -10.33474 -10.15603 -10.00017 -9.91504 -8.60703 -6.39413 -0.19024 0.36685 1.48512 1.49654 1.53770 1.65071 1.76277 1.77667 2.08289 2.51895 2.85425 2.88820 3.18315 3.61642 3.68624 3.80701 3.81878 3.92117 3.97220 3.98581 4.08542 4.12353 4.19550 4.20980 4.23248 4.41844 4.42875 4.47207 4.49111 4.55158 4.73155 4.76338 4.83650 4.87695 4.97632 5.01118 5.07112 5.24741 5.32852 5.35213 5.40494 5.46526 5.51120 5.73569 5.90644 5.96818 6.09020 6.24604 6.36076 6.61936 7.03718 7.17651 7.42238 8.77384 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.010370 B = 0.002895 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2699.320451 B = 9668.699339 C =11616.311022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.007 4.007 3 Si 1.101 2.899 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.611 4.611 8 H 0.033 0.967 9 C 0.190 3.810 10 O -0.359 6.359 11 C 0.446 3.554 12 O -0.525 6.525 13 C 0.081 3.919 14 O -0.394 6.394 15 C 0.047 3.953 16 C 0.122 3.878 17 N -0.715 5.715 18 C 0.554 3.446 19 O -0.580 6.580 20 C -0.159 4.159 21 C -0.094 4.094 22 C -0.134 4.134 23 C -0.090 4.090 24 C -0.128 4.128 25 C -0.077 4.077 26 C -0.146 4.146 27 C -0.120 4.120 28 C -0.109 4.109 29 H 0.272 0.728 30 H 0.105 0.895 31 H 0.121 0.879 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.059 0.941 36 H 0.410 0.590 37 H 0.131 0.869 38 H 0.148 0.852 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.129 0.871 42 H 0.076 0.924 43 H 0.044 0.956 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.057 0.943 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.564 -0.769 14.960 14.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.210 4.210 3 Si 0.924 3.076 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.648 4.648 8 H 0.051 0.949 9 C 0.156 3.844 10 O -0.277 6.277 11 C 0.289 3.711 12 O -0.414 6.414 13 C 0.004 3.996 14 O -0.314 6.314 15 C -0.029 4.029 16 C -0.001 4.001 17 N -0.367 5.367 18 C 0.343 3.657 19 O -0.462 6.462 20 C -0.162 4.162 21 C -0.112 4.112 22 C -0.152 4.152 23 C -0.108 4.108 24 C -0.146 4.146 25 C -0.096 4.096 26 C -0.184 4.184 27 C -0.158 4.158 28 C -0.147 4.147 29 H 0.083 0.917 30 H 0.123 0.877 31 H 0.139 0.861 32 H 0.101 0.899 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.078 0.922 36 H 0.247 0.753 37 H 0.149 0.851 38 H 0.166 0.834 39 H 0.176 0.824 40 H 0.174 0.826 41 H 0.147 0.853 42 H 0.094 0.906 43 H 0.063 0.937 44 H 0.104 0.896 45 H 0.107 0.893 46 H 0.076 0.924 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.029 0.219 15.462 15.464 hybrid contribution 0.163 -1.465 -0.457 1.543 sum 0.134 -1.246 15.005 15.057 Atomic orbital electron populations 1.70802 1.07126 1.31576 1.45129 1.26956 0.96726 1.05345 0.91943 0.83145 0.74495 0.72472 0.77524 1.19886 1.21206 1.19410 1.22239 0.93551 0.92627 1.56415 0.94893 1.21081 0.88221 0.93627 0.81472 1.86319 1.43714 1.81524 1.16102 1.23685 0.87899 0.73554 0.85939 1.90586 1.18020 1.45633 1.87143 1.21793 0.90835 1.05188 0.81817 1.87985 1.34414 1.93683 1.15359 1.23074 0.94404 1.03769 0.81629 1.21525 0.96011 0.84669 0.97916 1.45922 1.41130 1.14578 1.35034 1.18628 0.78928 0.88296 0.79842 1.90714 1.64330 1.44027 1.47162 1.19981 1.01949 0.93267 1.01010 1.21541 0.99243 0.93005 0.97447 1.21500 0.97215 0.97273 0.99190 1.21809 0.95329 1.00255 0.93364 1.21495 1.00515 0.91892 1.00693 1.21416 0.93796 0.98591 0.95804 1.23319 0.98219 0.97629 0.99218 1.22873 0.97193 0.95613 1.00080 1.22907 0.99618 0.96330 0.95798 0.91701 0.87735 0.86119 0.89891 0.87997 0.87637 0.92219 0.75301 0.85113 0.83407 0.82396 0.82561 0.85299 0.90583 0.93670 0.89580 0.89338 0.92395 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.26 13.51 21.45 0.29 -51.97 16 2 C -0.01 -0.37 5.40 84.65 0.46 0.08 16 3 Si 1.10 50.14 29.90 68.60 2.05 52.19 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 5 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.61 -34.75 7.35 25.60 0.19 -34.56 16 8 H 0.03 1.98 7.81 -2.91 -0.02 1.96 16 9 C 0.19 9.43 0.11 -11.01 0.00 9.43 16 10 O -0.36 -17.13 9.10 -51.42 -0.47 -17.60 16 11 C 0.45 20.02 7.42 71.23 0.53 20.55 16 12 O -0.53 -27.87 14.60 28.39 0.41 -27.45 16 13 C 0.08 2.44 6.53 71.23 0.47 2.90 16 14 O -0.39 -11.86 9.82 -129.90 -1.28 -13.14 16 15 C 0.05 0.88 6.07 71.98 0.44 1.32 16 16 C 0.12 2.67 6.06 86.38 0.52 3.19 16 17 N -0.71 -17.98 5.45 -465.98 -2.54 -20.52 16 18 C 0.55 16.19 7.77 86.78 0.67 16.87 16 19 O -0.58 -20.30 16.35 -3.88 -0.06 -20.36 16 20 C -0.16 -4.08 5.87 -20.09 -0.12 -4.20 16 21 C -0.09 -2.10 9.54 22.53 0.21 -1.88 16 22 C -0.13 -2.47 10.03 22.23 0.22 -2.25 16 23 C -0.09 -1.38 10.04 22.33 0.22 -1.16 16 24 C -0.13 -2.15 10.03 22.23 0.22 -1.93 16 25 C -0.08 -1.76 9.60 22.53 0.22 -1.54 16 26 C -0.15 -6.39 6.90 31.18 0.22 -6.18 16 27 C -0.12 -4.28 8.03 31.18 0.25 -4.03 16 28 C -0.11 -4.69 6.67 31.12 0.21 -4.48 16 29 H 0.27 15.54 5.76 -92.70 -0.53 15.00 16 30 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 31 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.41 9.52 6.51 -92.70 -0.60 8.91 16 37 H 0.13 2.71 6.41 -2.91 -0.02 2.69 16 38 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 39 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 40 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 41 H 0.13 2.98 7.65 -2.91 -0.02 2.96 16 42 H 0.08 3.35 8.09 -2.39 -0.02 3.33 16 43 H 0.04 2.01 7.32 -2.39 -0.02 1.99 16 44 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 45 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 46 H 0.06 2.47 7.77 -2.39 -0.02 2.45 16 47 H 0.08 3.57 8.09 -2.39 -0.02 3.55 16 Total: -1.00 -80.18 398.21 3.96 -76.22 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: 0.62 Total: 30.49 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: 4.93 Total: -7.86 kcal Atomic # 7 Polarization: -70.24 SS G_CDS: -2.25 Total: -72.49 kcal Atomic # 8 Polarization: -77.15 SS G_CDS: -1.39 Total: -78.55 kcal Atomic # 14 Polarization: 50.14 SS G_CDS: 2.05 Total: 52.19 kcal Total: -80.18 3.96 -76.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857962.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.258 kcal (2) G-P(sol) polarization free energy of solvation -80.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds