Wall clock time and date at job start Wed Apr 1 2020 05:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99574 * 2 1 4 4 H 1.48500 * 109.47051 * 270.00068 * 3 2 1 5 5 H 1.48493 * 109.47020 * 29.99999 * 3 2 1 6 6 H 1.48499 * 109.47176 * 150.00083 * 3 2 1 7 7 C 1.37878 * 120.00487 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99775 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00108 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46789 * 180.02562 * 9 7 2 11 11 C 1.50708 * 109.46688 * 179.97438 * 10 9 7 12 12 O 1.20823 * 120.00052 * 359.97438 * 11 10 9 13 13 O 1.34242 * 119.99846 * 179.97438 * 11 10 9 14 14 C 1.35984 * 117.00113 * 175.00554 * 13 11 10 15 15 C 1.38712 * 119.99672 * 75.22669 * 14 13 11 16 16 C 1.38111 * 120.00207 * 180.02562 * 15 14 13 17 17 C 1.38722 * 119.99530 * 0.02562 * 16 15 14 18 18 O 1.35958 * 119.99825 * 179.97438 * 17 16 15 19 19 C 1.42898 * 117.00033 * 186.09109 * 18 17 16 20 20 H 1.08994 * 109.79812 * 26.63491 * 19 18 17 21 21 C 1.52501 * 109.53168 * 146.85606 * 19 18 17 22 22 C 1.51790 * 110.81568 * 35.02065 * 21 19 18 23 23 C 1.51778 * 113.81425 * 66.72775 * 22 21 19 24 24 C 1.52980 * 110.88074 * 293.00393 * 23 22 21 25 25 N 1.47192 * 108.66711 * 86.46158 * 24 23 22 26 26 C 1.33377 * 120.43209 * 288.05205 * 25 24 23 27 27 O 1.21279 * 119.89702 * 180.25567 * 26 25 24 28 28 C 1.38713 * 120.00082 * 0.25054 * 17 16 15 29 29 C 1.38111 * 119.99822 * 359.47708 * 28 17 16 30 30 H 0.96999 * 120.00639 * 0.02562 * 1 2 3 31 31 H 1.08992 * 109.47230 * 59.99608 * 9 7 2 32 32 H 1.09005 * 109.46823 * 299.99386 * 9 7 2 33 33 H 1.08992 * 109.47629 * 59.99761 * 10 9 7 34 34 H 1.08997 * 109.47025 * 299.98974 * 10 9 7 35 35 H 1.08005 * 120.00352 * 0.02562 * 15 14 13 36 36 H 1.07999 * 120.00508 * 180.02562 * 16 15 14 37 37 H 1.08993 * 109.25448 * 274.62593 * 21 19 18 38 38 H 1.09008 * 109.08383 * 155.29808 * 21 19 18 39 39 H 1.08997 * 108.61325 * 305.60791 * 22 21 19 40 40 H 1.09006 * 108.50417 * 187.77225 * 22 21 19 41 41 H 1.08999 * 109.19666 * 172.63731 * 23 22 21 42 42 H 1.09005 * 109.19470 * 53.36734 * 23 22 21 43 43 H 1.09003 * 109.60400 * 326.70708 * 24 23 22 44 44 H 1.08997 * 109.74229 * 206.29627 * 24 23 22 45 45 H 0.97000 * 119.78822 * 108.03051 * 25 24 23 46 46 H 1.08004 * 119.99910 * 179.74628 * 28 17 16 47 47 H 1.07997 * 119.99885 * 180.25611 * 29 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0047 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6364 -0.0014 11 6 5.5287 -2.6363 -0.0014 12 8 6.1328 -1.5899 -0.0009 13 8 6.2000 -3.7988 -0.0020 14 6 7.5540 -3.7298 -0.1075 15 6 8.3156 -3.3390 0.9839 16 6 9.6908 -3.2684 0.8768 17 6 10.3102 -3.5879 -0.3227 18 8 11.6639 -3.5179 -0.4284 19 6 12.2251 -3.7298 -1.7253 20 1 11.4992 -3.4563 -2.4910 21 6 13.4779 -2.8750 -1.8847 22 6 14.2283 -2.7673 -0.5696 23 6 14.8251 -4.0798 -0.0954 24 6 13.7253 -5.0755 0.2779 25 7 13.3154 -5.8014 -0.9351 26 6 12.6062 -5.1869 -1.8829 27 8 12.2696 -5.7956 -2.8764 28 6 9.5481 -3.9731 -1.4158 29 6 8.1734 -4.0491 -1.3069 30 1 -0.4851 0.8400 -0.0004 31 1 3.8746 -0.6806 0.8904 32 1 3.8753 -0.6795 -0.8896 33 1 3.6587 -3.1493 -0.8919 34 1 3.6581 -3.1511 0.8880 35 1 7.8333 -3.0899 1.9177 36 1 10.2838 -2.9646 1.7267 37 1 13.1922 -1.8772 -2.2176 38 1 14.1274 -3.3304 -2.6323 39 1 13.5418 -2.4013 0.1937 40 1 15.0332 -2.0420 -0.6890 41 1 15.4518 -3.8942 0.7769 42 1 15.4372 -4.5037 -0.8916 43 1 12.8705 -4.5389 0.6895 44 1 14.1037 -5.7821 1.0166 45 1 13.5629 -6.7327 -1.0462 46 1 10.0302 -4.2178 -2.3508 47 1 7.5804 -4.3531 -2.1568 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813066038.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:24 Heat of formation + Delta-G solvation = -127.081642 kcal Electronic energy + Delta-G solvation = -30034.555023 eV Core-core repulsion = 25762.071723 eV Total energy + Delta-G solvation = -4272.483299 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.57949 -40.95541 -39.38817 -37.84025 -36.97808 -36.06540 -34.18076 -33.66953 -31.66730 -31.49460 -31.03120 -29.31329 -26.99675 -26.51797 -24.68606 -23.47317 -23.21141 -21.68503 -21.14666 -20.37493 -19.86354 -18.98415 -18.02532 -17.68758 -17.25888 -17.04399 -16.72722 -16.01859 -15.90334 -15.55097 -15.30020 -14.75646 -14.59957 -14.34999 -14.20837 -14.14954 -13.91219 -13.70138 -13.66405 -13.26808 -13.04925 -12.73994 -12.68753 -12.57457 -12.40328 -11.89938 -11.73330 -11.51224 -11.31093 -11.30214 -11.10220 -11.04703 -10.62436 -10.38349 -10.26689 -10.20153 -10.03429 -9.78088 -9.57511 -9.29589 -9.27935 -8.58289 -8.31692 -6.09625 -4.09957 0.96832 1.07578 1.93263 2.52563 2.69761 2.77553 2.99702 3.32484 3.39586 3.48171 3.62662 3.83747 4.12690 4.22950 4.28959 4.43797 4.44636 4.57039 4.62123 4.67600 4.86804 4.95021 5.04778 5.10219 5.10648 5.20769 5.24870 5.35254 5.40678 5.44114 5.48663 5.55747 5.72287 5.78482 5.82822 5.92538 6.01061 6.02014 6.19011 6.25613 6.31899 6.51969 6.69604 6.77578 6.98995 7.19139 7.25943 7.67302 7.69303 8.17814 8.43736 8.92405 9.51762 11.02792 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.023507 B = 0.001950 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.849776 B =14352.211074 C =14739.228502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.071 3.929 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.528 4.528 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.093 4.093 11 C 0.454 3.546 12 O -0.493 6.493 13 O -0.300 6.300 14 C 0.061 3.939 15 C -0.083 4.083 16 C -0.130 4.130 17 C 0.111 3.889 18 O -0.291 6.291 19 C 0.067 3.933 20 H 0.113 0.887 21 C -0.115 4.115 22 C -0.121 4.121 23 C -0.138 4.138 24 C 0.095 3.905 25 N -0.712 5.712 26 C 0.506 3.494 27 O -0.541 6.541 28 C -0.191 4.191 29 C -0.079 4.079 30 H 0.265 0.735 31 H 0.026 0.974 32 H 0.022 0.978 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.103 0.897 44 H 0.084 0.916 45 H 0.401 0.599 46 H 0.138 0.862 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.163 -10.406 0.890 34.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.566 4.566 8 H 0.094 0.906 9 C -0.040 4.040 10 C -0.130 4.130 11 C 0.298 3.702 12 O -0.377 6.377 13 O -0.217 6.217 14 C 0.019 3.981 15 C -0.101 4.101 16 C -0.149 4.149 17 C 0.067 3.933 18 O -0.205 6.205 19 C 0.008 3.992 20 H 0.130 0.870 21 C -0.153 4.153 22 C -0.158 4.158 23 C -0.177 4.177 24 C -0.029 4.029 25 N -0.364 5.364 26 C 0.290 3.710 27 O -0.418 6.418 28 C -0.209 4.209 29 C -0.098 4.098 30 H 0.074 0.926 31 H 0.045 0.955 32 H 0.040 0.960 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.121 0.879 44 H 0.103 0.897 45 H 0.237 0.763 46 H 0.156 0.844 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 33.112 -10.002 0.570 34.595 hybrid contribution 0.500 0.487 -0.237 0.737 sum 33.612 -9.515 0.332 34.935 Atomic orbital electron populations 1.69899 1.06256 1.27111 1.50464 1.24954 0.94734 0.99199 0.94201 0.86806 0.80562 0.83433 0.78807 1.20153 1.21282 1.18607 1.21007 0.88721 0.94849 1.51995 0.90575 1.19501 0.97026 0.89420 0.98008 1.21596 0.82497 1.03775 1.05168 1.25262 0.92670 0.80749 0.71500 1.90648 1.70352 1.32452 1.44235 1.84753 1.16830 1.36263 1.83833 1.18513 0.81989 1.03660 0.93921 1.21177 0.93130 0.97059 0.98772 1.20210 0.93576 1.04644 0.96463 1.19032 0.82158 0.97337 0.94748 1.86189 1.17963 1.86510 1.29857 1.22869 0.97780 0.92301 0.86298 0.86962 1.21424 0.94044 1.00405 0.99392 1.21041 0.99945 0.97650 0.97214 1.21782 0.98016 0.95803 1.02077 1.22137 0.99186 0.95489 0.86080 1.45868 1.54827 1.15225 1.20512 1.20822 0.77752 0.89469 0.82909 1.90801 1.54764 1.66413 1.29826 1.21157 0.94171 1.06548 0.99059 1.20976 0.94203 0.98256 0.96339 0.92560 0.95521 0.96004 0.88009 0.87987 0.84568 0.84454 0.89520 0.90001 0.90234 0.91424 0.90347 0.91518 0.87946 0.89712 0.76319 0.84419 0.84603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.37 13.96 55.43 0.77 -26.59 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 7 C -0.53 -14.72 9.66 -34.44 -0.33 -15.05 16 8 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 9 C 0.00 -0.05 3.33 -27.88 -0.09 -0.14 16 10 C -0.09 -1.78 5.75 -27.88 -0.16 -1.94 16 11 C 0.45 8.44 7.82 36.01 0.28 8.72 16 12 O -0.49 -10.48 15.41 -18.75 -0.29 -10.76 16 13 O -0.30 -4.93 10.03 -23.75 -0.24 -5.17 16 14 C 0.06 0.91 5.19 -39.23 -0.20 0.70 16 15 C -0.08 -1.09 9.46 -39.45 -0.37 -1.47 16 16 C -0.13 -1.43 9.98 -39.45 -0.39 -1.82 16 17 C 0.11 1.21 6.68 -39.23 -0.26 0.95 16 18 O -0.29 -2.49 5.41 -19.61 -0.11 -2.59 16 19 C 0.07 0.54 2.31 -27.78 -0.06 0.48 16 20 H 0.11 0.95 5.80 -51.93 -0.30 0.65 16 21 C -0.12 -0.65 5.56 -27.60 -0.15 -0.81 16 22 C -0.12 -0.56 5.19 -27.97 -0.15 -0.70 16 23 C -0.14 -0.53 5.73 -27.36 -0.16 -0.68 16 24 C 0.09 0.43 6.44 -3.67 -0.02 0.41 16 25 N -0.71 -4.75 5.27 -59.90 -0.32 -5.07 16 26 C 0.51 4.79 6.72 -11.25 -0.08 4.72 16 27 O -0.54 -7.18 17.92 5.56 0.10 -7.08 16 28 C -0.19 -2.23 8.94 -39.45 -0.35 -2.59 16 29 C -0.08 -1.05 9.98 -39.45 -0.39 -1.45 16 30 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.03 0.66 7.16 -51.93 -0.37 0.29 16 32 H 0.02 0.54 7.53 -51.93 -0.39 0.14 16 33 H 0.10 1.80 8.14 -51.93 -0.42 1.37 16 34 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 35 H 0.14 1.69 8.06 -52.48 -0.42 1.26 16 36 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.45 7.86 -51.92 -0.41 0.04 16 39 H 0.08 0.43 6.96 -51.93 -0.36 0.07 16 40 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.07 0.28 8.05 -51.93 -0.42 -0.14 16 43 H 0.10 0.60 5.22 -51.93 -0.27 0.32 16 44 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.40 2.26 8.91 -40.82 -0.36 1.90 16 46 H 0.14 1.47 5.86 -52.48 -0.31 1.16 16 47 H 0.14 1.63 8.06 -52.49 -0.42 1.20 16 LS Contribution 383.10 15.07 5.77 5.77 Total: -1.00 -34.74 383.10 -8.56 -43.30 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -6.58 Total: -0.41 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -3.00 Total: -8.72 kcal Atomic # 7 Polarization: -32.12 SS G_CDS: 0.46 Total: -31.66 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.53 Total: -25.61 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.74 -8.56 -43.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813066038.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.783 kcal (2) G-P(sol) polarization free energy of solvation -34.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds