Wall clock time and date at job start Wed Apr 1 2020 05:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00088 * 2 1 4 4 H 1.48497 * 109.47269 * 270.00760 * 3 2 1 5 5 H 1.48507 * 109.46781 * 30.00789 * 3 2 1 6 6 H 1.48499 * 109.46928 * 150.00326 * 3 2 1 7 7 C 1.38704 * 120.00312 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00127 * 179.97438 * 7 2 1 9 9 O 1.34811 * 119.99698 * 359.97438 * 7 2 1 10 10 C 1.35504 * 116.99936 * 185.05989 * 9 7 2 11 11 C 1.38833 * 120.16924 * 354.39489 * 10 9 7 12 12 C 1.38016 * 120.08276 * 179.97438 * 11 10 9 13 13 C 1.38595 * 120.41246 * 359.97438 * 12 11 10 14 14 C 1.37799 * 120.32911 * 359.97438 * 13 12 11 15 15 C 1.39729 * 119.91753 * 0.02640 * 14 13 12 16 16 C 1.47397 * 120.20185 * 179.97438 * 15 14 13 17 17 O 1.21517 * 119.99663 * 180.02562 * 16 15 14 18 18 O 1.34757 * 120.00124 * 0.02562 * 16 15 14 19 19 C 1.45202 * 116.99713 * 179.97438 * 18 16 15 20 20 H 1.08998 * 112.84883 * 339.66756 * 19 18 16 21 21 C 1.53777 * 113.61386 * 110.86432 * 19 18 16 22 22 C 1.53952 * 87.01894 * 139.94716 * 21 19 18 23 23 H 1.09004 * 113.61223 * 89.20192 * 22 21 19 24 24 N 1.46907 * 113.66904 * 220.06345 * 22 21 19 25 25 C 1.47008 * 110.99929 * 286.32582 * 24 22 21 26 26 C 1.53098 * 109.25898 * 177.60561 * 25 24 22 27 27 O 1.43018 * 109.25733 * 56.84518 * 26 25 24 28 28 C 1.43012 * 113.74043 * 301.33290 * 27 26 25 29 29 C 1.47009 * 110.99999 * 162.68880 * 24 22 21 30 30 C 1.53775 * 87.11510 * 334.63838 * 22 21 19 31 31 H 0.97003 * 120.00196 * 359.97438 * 1 2 3 32 32 H 1.07999 * 119.95709 * 359.97400 * 11 10 9 33 33 H 1.08001 * 119.79864 * 179.70074 * 12 11 10 34 34 H 1.07997 * 119.83124 * 179.97438 * 13 12 11 35 35 H 1.08006 * 120.03801 * 180.02562 * 14 13 12 36 36 H 1.08997 * 113.61711 * 254.52652 * 21 19 18 37 37 H 1.09004 * 113.61245 * 25.42920 * 21 19 18 38 38 H 1.09006 * 109.51133 * 297.53780 * 25 24 22 39 39 H 1.08999 * 109.50887 * 57.67168 * 25 24 22 40 40 H 1.09001 * 109.50562 * 296.91812 * 26 25 24 41 41 H 1.08997 * 109.54852 * 176.80644 * 26 25 24 42 42 H 1.09001 * 109.50749 * 298.73963 * 28 27 26 43 43 H 1.08999 * 109.54289 * 178.62569 * 28 27 26 44 44 H 1.09003 * 109.50780 * 302.33247 * 29 24 22 45 45 H 1.09001 * 109.50911 * 62.45873 * 29 24 22 46 46 H 1.09003 * 113.61095 * 270.81114 * 30 22 21 47 47 H 1.08999 * 113.69121 * 139.91988 * 30 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6526 0.7003 6 1 3.5468 1.4401 0.7000 7 6 2.0087 -1.2012 -0.0005 8 1 3.0888 -1.2011 -0.0010 9 8 1.3347 -2.3687 -0.0005 10 6 2.0687 -3.5028 0.1054 11 6 3.4555 -3.4402 0.0908 12 6 4.2014 -4.5964 0.1993 13 6 3.5748 -5.8263 0.3241 14 6 2.1994 -5.9080 0.3416 15 6 1.4308 -4.7462 0.2326 16 6 -0.0409 -4.8264 0.2501 17 8 -0.7056 -3.8137 0.1546 18 8 -0.6491 -6.0227 0.3719 19 6 -2.1011 -6.0259 0.3823 20 1 -2.5247 -5.0553 0.6404 21 6 -2.7247 -6.6555 -0.8745 22 6 -3.7628 -7.3004 0.0617 23 1 -4.6425 -6.6796 0.2319 24 7 -4.1020 -8.6839 -0.2977 25 6 -4.9495 -8.7237 -1.4982 26 6 -5.2289 -10.1821 -1.8710 27 8 -5.8347 -10.8456 -0.7583 28 6 -5.0361 -10.8265 0.4279 29 6 -4.7548 -9.3746 0.8239 30 6 -2.7089 -7.1942 1.1764 31 1 -0.4850 0.8401 0.0004 32 1 3.9513 -2.4856 -0.0057 33 1 5.2799 -4.5429 0.1826 34 1 4.1677 -6.7252 0.4080 35 1 1.7161 -6.8689 0.4394 36 1 -3.1502 -5.9258 -1.5633 37 1 -2.0750 -7.3775 -1.3694 38 1 -5.8911 -8.2129 -1.2963 39 1 -4.4361 -8.2293 -2.3228 40 1 -4.2924 -10.6787 -2.1249 41 1 -5.9031 -10.2171 -2.7267 42 1 -4.0939 -11.3417 0.2408 43 1 -5.5705 -11.3270 1.2354 44 1 -4.0991 -9.3553 1.6945 45 1 -5.6931 -8.8743 1.0631 46 1 -2.0549 -8.0637 1.2432 47 1 -3.1204 -6.8989 2.1415 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821586736.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:08 Heat of formation + Delta-G solvation = -92.661986 kcal Electronic energy + Delta-G solvation = -30134.853470 eV Core-core repulsion = 25863.862719 eV Total energy + Delta-G solvation = -4270.990751 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.42126 -39.70189 -38.88737 -37.77173 -36.42244 -35.41028 -34.01369 -32.42858 -31.51202 -30.64485 -28.98740 -27.54685 -26.05366 -25.53114 -24.36449 -23.90434 -22.73647 -21.57649 -20.78089 -20.11873 -19.64171 -18.08942 -17.64474 -17.17320 -16.46464 -16.38853 -15.78382 -15.60886 -15.36178 -15.24867 -15.02433 -14.72913 -14.53834 -14.32740 -14.21463 -13.83756 -13.64796 -13.41916 -12.83460 -12.71059 -12.50876 -12.36622 -12.16917 -11.82687 -11.77532 -11.68139 -11.55724 -11.37176 -11.15276 -11.06641 -10.95008 -10.81298 -10.72119 -10.59458 -10.50178 -9.96220 -9.81714 -9.74349 -9.24940 -8.95079 -8.69600 -8.34003 -7.39681 -6.53037 -4.12791 1.59133 2.29298 3.07357 3.08606 3.13314 3.16170 3.43838 3.53169 3.68088 3.87157 4.22602 4.48950 4.52667 4.62637 4.69441 4.77389 4.84951 4.86611 4.98874 4.99889 5.00306 5.12092 5.24034 5.33942 5.37027 5.41197 5.49344 5.54393 5.58212 5.63035 5.67112 5.74443 5.75942 5.87833 5.95409 6.02922 6.11716 6.23800 6.56494 6.63890 6.64444 6.77868 6.82862 6.88668 7.01969 7.12251 7.21879 7.30369 7.64305 7.85540 8.72906 8.87341 9.56562 10.60730 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.015921 B = 0.002271 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.231645 B =12328.833973 C =13613.975676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.045 3.955 3 Si 0.943 3.057 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.403 4.403 8 H 0.096 0.904 9 O -0.125 6.125 10 C 0.191 3.809 11 C -0.239 4.239 12 C -0.044 4.044 13 C -0.235 4.235 14 C -0.015 4.015 15 C -0.216 4.216 16 C 0.497 3.503 17 O -0.478 6.478 18 O -0.351 6.351 19 C 0.066 3.934 20 H 0.110 0.890 21 C -0.134 4.134 22 C 0.055 3.945 23 H 0.071 0.929 24 N -0.521 5.521 25 C 0.017 3.983 26 C 0.064 3.936 27 O -0.388 6.388 28 C 0.064 3.936 29 C 0.016 3.984 30 C -0.120 4.120 31 H 0.273 0.727 32 H 0.134 0.866 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.124 0.876 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.042 0.958 39 H 0.089 0.911 40 H 0.060 0.940 41 H 0.097 0.903 42 H 0.060 0.940 43 H 0.097 0.903 44 H 0.089 0.911 45 H 0.042 0.958 46 H 0.102 0.898 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.978 -17.465 0.111 18.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.163 4.163 3 Si 0.766 3.234 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.478 4.478 8 H 0.114 0.886 9 O -0.023 6.023 10 C 0.131 3.869 11 C -0.258 4.258 12 C -0.062 4.062 13 C -0.254 4.254 14 C -0.034 4.034 15 C -0.219 4.219 16 C 0.342 3.658 17 O -0.364 6.364 18 O -0.269 6.269 19 C 0.010 3.990 20 H 0.128 0.872 21 C -0.172 4.172 22 C -0.054 4.054 23 H 0.089 0.911 24 N -0.247 5.247 25 C -0.112 4.112 26 C -0.013 4.013 27 O -0.307 6.307 28 C -0.013 4.013 29 C -0.112 4.112 30 C -0.157 4.157 31 H 0.083 0.917 32 H 0.152 0.848 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.142 0.858 36 H 0.092 0.908 37 H 0.119 0.881 38 H 0.061 0.939 39 H 0.107 0.893 40 H 0.079 0.921 41 H 0.115 0.885 42 H 0.078 0.922 43 H 0.115 0.885 44 H 0.107 0.893 45 H 0.060 0.940 46 H 0.120 0.880 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.450 -17.224 -0.055 18.392 hybrid contribution -0.045 1.542 0.178 1.553 sum -6.495 -15.681 0.122 16.974 Atomic orbital electron populations 1.70115 1.06044 1.27915 1.42301 1.25414 0.95837 0.99055 0.96022 0.85697 0.79019 0.79758 0.78878 1.19662 1.20076 1.18964 1.21533 0.92007 0.80927 1.53377 0.88648 1.84142 1.33796 1.11145 1.73235 1.19244 0.90027 0.87023 0.90570 1.21110 0.93028 0.99486 1.12221 1.20967 0.98778 0.92290 0.94185 1.20544 0.94124 0.97207 1.13497 1.20963 0.93535 0.96240 0.92626 1.18043 0.88470 0.92511 1.22879 1.21136 0.89194 0.81139 0.74318 1.90984 1.65805 1.35155 1.44472 1.86624 1.21168 1.34322 1.84801 1.23957 0.78416 0.99493 0.97114 0.87247 1.23482 0.97078 0.99677 0.96976 1.22886 0.96132 0.88344 0.97990 0.91112 1.62390 1.43046 1.14959 1.04264 1.22765 0.96123 0.98000 0.94266 1.22671 0.98665 0.90966 0.88992 1.87975 1.45327 1.77005 1.20371 1.22669 0.95880 0.95146 0.87624 1.22767 0.98241 0.95437 0.94740 1.23254 0.96579 0.98915 0.96976 0.91741 0.84847 0.86968 0.86984 0.85762 0.90833 0.88113 0.93943 0.89313 0.92143 0.88483 0.92158 0.88514 0.89309 0.93984 0.87986 0.90747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.62 13.67 55.48 0.76 -23.86 16 2 C 0.04 1.22 5.49 -17.52 -0.10 1.13 16 3 Si 0.94 20.12 29.55 -169.99 -5.02 15.09 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 7 C -0.40 -11.19 9.49 30.90 0.29 -10.89 16 8 H 0.10 2.39 5.21 -52.48 -0.27 2.12 16 9 O -0.13 -3.63 7.84 -21.00 -0.16 -3.80 16 10 C 0.19 4.71 6.66 -38.58 -0.26 4.45 16 11 C -0.24 -5.07 9.16 -39.44 -0.36 -5.43 16 12 C -0.04 -0.76 10.03 -39.53 -0.40 -1.16 16 13 C -0.23 -3.91 10.02 -39.61 -0.40 -4.30 16 14 C -0.02 -0.28 9.61 -39.19 -0.38 -0.65 16 15 C -0.22 -4.82 5.89 -104.83 -0.62 -5.44 16 16 C 0.50 11.28 7.89 34.46 0.27 11.55 16 17 O -0.48 -12.82 14.40 -26.60 -0.38 -13.21 16 18 O -0.35 -6.47 9.49 -40.65 -0.39 -6.85 16 19 C 0.07 1.02 4.23 -25.92 -0.11 0.91 16 20 H 0.11 1.88 7.11 -51.93 -0.37 1.51 16 21 C -0.13 -1.73 7.18 -25.83 -0.19 -1.92 16 22 C 0.05 0.59 3.17 -66.81 -0.21 0.38 16 23 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 24 N -0.52 -5.18 4.67 -225.25 -1.05 -6.23 16 25 C 0.02 0.15 5.58 -3.71 -0.02 0.13 16 26 C 0.06 0.53 7.01 37.21 0.26 0.79 16 27 O -0.39 -3.87 10.83 -35.23 -0.38 -4.26 16 28 C 0.06 0.52 7.01 37.21 0.26 0.78 16 29 C 0.02 0.14 5.53 -3.71 -0.02 0.12 16 30 C -0.12 -1.39 6.73 -25.92 -0.17 -1.56 16 31 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.13 2.75 5.64 -52.49 -0.30 2.46 16 33 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 35 H 0.12 1.94 7.61 -52.48 -0.40 1.54 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 0.77 7.72 -51.93 -0.40 0.37 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.09 0.70 7.41 -51.93 -0.38 0.31 16 45 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 387.13 15.07 5.83 5.83 Total: -1.00 -33.42 387.13 -9.69 -43.11 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -6.75 Total: 5.28 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -2.14 Total: -11.11 kcal Atomic # 7 Polarization: -29.80 SS G_CDS: -0.29 Total: -30.09 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -1.31 Total: -28.11 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.42 -9.69 -43.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821586736.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.552 kcal (2) G-P(sol) polarization free energy of solvation -33.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds