Wall clock time and date at job start Wed Apr 1 2020 04:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 117.00008 * 2 1 4 4 O 1.20831 * 120.00101 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99909 * 180.02562 * 3 2 1 6 6 N 1.46503 * 109.46965 * 180.02562 * 5 3 2 7 7 C 1.36941 * 120.00058 * 276.72510 * 6 5 3 8 8 H 1.07994 * 120.00033 * 179.00283 * 7 6 5 9 9 C 1.38809 * 119.99578 * 358.99941 * 7 6 5 10 10 N 1.31622 * 120.00542 * 28.16720 * 9 7 6 11 11 Si 1.86801 * 120.00015 * 208.16880 * 9 7 6 12 12 H 1.48506 * 109.47040 * 60.00112 * 11 9 7 13 13 H 1.48497 * 109.47293 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47148 * 300.00103 * 11 9 7 15 15 C 1.46499 * 120.00200 * 96.72703 * 6 5 3 16 16 C 1.53005 * 109.47253 * 269.99778 * 15 6 5 17 17 O 1.42907 * 109.46893 * 64.99781 * 16 15 6 18 18 C 1.35872 * 116.99868 * 180.02562 * 17 16 15 19 19 C 1.38825 * 119.93462 * 180.02562 * 18 17 16 20 20 C 1.37913 * 120.05781 * 180.02562 * 19 18 17 21 21 C 1.39347 * 119.94109 * 359.97438 * 20 19 18 22 22 C 1.48433 * 120.06386 * 179.97438 * 21 20 19 23 23 N 1.34059 * 126.67139 * 0.02562 * 22 21 20 24 24 N 1.28994 * 107.26007 * 179.97438 * 23 22 21 25 25 N 1.28720 * 108.94780 * 359.97438 * 24 23 22 26 26 H 0.97005 * 125.33875 * 179.97438 * 25 24 23 27 27 N 1.28873 * 109.32541 * 0.02562 * 25 24 23 28 28 C 1.39338 * 119.87413 * 0.25201 * 21 20 19 29 29 C 1.37920 * 119.94004 * 359.51773 * 28 21 20 30 30 H 1.09002 * 109.46945 * 299.99619 * 1 2 3 31 31 H 1.09001 * 109.47325 * 59.99713 * 1 2 3 32 32 H 1.08994 * 109.47080 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47604 * 60.00090 * 5 3 2 34 34 H 1.08997 * 109.47094 * 299.99753 * 5 3 2 35 35 H 0.96998 * 120.00378 * 179.97438 * 10 9 7 36 36 H 1.08999 * 109.47495 * 150.00104 * 15 6 5 37 37 H 1.09001 * 109.47299 * 29.99513 * 15 6 5 38 38 H 1.09007 * 109.46885 * 305.00470 * 16 15 6 39 39 H 1.08992 * 109.47317 * 184.99955 * 16 15 6 40 40 H 1.07997 * 119.97166 * 359.97438 * 19 18 17 41 41 H 1.08004 * 120.03198 * 180.02562 * 20 19 18 42 42 H 1.08003 * 120.03565 * 179.72675 * 28 21 20 43 43 H 1.07995 * 119.96983 * 180.22792 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.0422 3.3765 -1.1772 8 1 4.3328 4.4166 -1.1748 9 6 3.7299 2.7458 -2.3737 10 7 2.8850 1.7366 -2.3848 11 14 4.5089 3.3292 -3.9681 12 1 5.9856 3.2052 -3.8719 13 1 4.0151 2.4964 -5.0941 14 1 4.1458 4.7494 -4.2058 15 6 4.3325 3.3393 1.2604 16 6 3.0808 3.9750 1.8689 17 8 2.1509 2.9499 2.2247 18 6 0.9774 3.3480 2.7819 19 6 0.0300 2.4028 3.1513 20 6 -1.1622 2.8041 3.7166 21 6 -1.4153 4.1596 3.9175 22 6 -2.6977 4.5945 4.5252 23 7 -3.7014 3.8030 4.9291 24 7 -4.6280 4.5686 5.3974 25 7 -4.2452 5.7939 5.3027 26 1 -4.7603 6.5660 5.5848 27 7 -3.0709 5.8342 4.7735 28 6 -0.4645 5.1063 3.5414 29 6 0.7280 4.6991 2.9809 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.9558 0.7810 -0.8908 34 1 3.9564 0.7806 0.8891 35 1 2.6665 1.2961 -3.2209 36 1 5.0771 4.1124 1.0710 37 1 4.7404 2.6040 1.9540 38 1 2.6227 4.6444 1.1408 39 1 3.3566 4.5403 2.7591 40 1 0.2264 1.3524 2.9950 41 1 -1.8988 2.0684 4.0042 42 1 -0.6598 6.1578 3.6919 43 1 1.4668 5.4323 2.6927 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821662524.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:40 Heat of formation + Delta-G solvation = 68.360610 kcal Electronic energy + Delta-G solvation = -30980.899301 eV Core-core repulsion = 26645.643421 eV Total energy + Delta-G solvation = -4335.255879 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.49010 -39.78795 -38.67990 -37.41289 -35.81761 -34.39086 -34.29855 -33.35082 -31.79506 -30.93872 -29.77575 -28.84278 -27.45300 -25.86907 -24.81981 -24.33462 -23.70566 -22.30452 -21.39893 -20.63002 -19.59788 -19.21234 -17.95637 -17.19043 -16.87013 -16.26498 -16.07597 -15.82551 -15.41569 -14.94394 -14.77489 -14.57750 -14.47979 -13.93103 -13.64971 -13.36152 -13.32935 -13.00590 -12.68836 -12.54864 -12.39587 -12.04658 -11.91443 -11.64613 -11.45985 -11.40882 -11.21219 -11.15278 -10.99341 -10.89902 -10.75832 -10.52266 -10.34022 -10.20326 -10.08965 -9.86200 -9.36252 -8.88388 -8.85957 -8.39041 -7.76099 -7.19672 -5.96505 -3.17903 0.82991 1.22000 1.53053 2.15706 2.45948 3.35669 3.43544 3.43817 3.66876 3.76807 4.01154 4.12408 4.18665 4.25682 4.49288 4.99860 5.08110 5.20819 5.24297 5.27494 5.39153 5.45517 5.61514 5.75304 5.78539 5.86733 5.93266 5.95575 6.01475 6.15500 6.22599 6.25285 6.29298 6.42899 6.44263 6.50268 6.55726 6.60455 6.82899 6.90428 7.20819 7.66279 7.88770 7.98849 8.09229 8.13206 8.99846 9.59434 9.76319 10.10542 11.14615 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.016519 B = 0.002856 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.627333 B = 9800.962534 C =10249.891932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.387 6.387 3 C 0.475 3.525 4 O -0.495 6.495 5 C 0.191 3.809 6 N -0.568 5.568 7 C -0.257 4.257 8 H 0.081 0.919 9 C 0.007 3.993 10 N -0.896 5.896 11 Si 0.902 3.098 12 H -0.283 1.283 13 H -0.292 1.292 14 H -0.285 1.285 15 C 0.149 3.851 16 C 0.036 3.964 17 O -0.282 6.282 18 C 0.193 3.807 19 C -0.161 4.161 20 C -0.033 4.033 21 C -0.088 4.088 22 C 0.241 3.759 23 N -0.275 5.275 24 N -0.055 5.055 25 N -0.233 5.233 26 H 0.473 0.527 27 N -0.306 5.306 28 C -0.034 4.034 29 C -0.220 4.220 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.049 0.951 35 H 0.258 0.742 36 H 0.078 0.922 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.043 0.957 40 H 0.132 0.868 41 H 0.136 0.864 42 H 0.128 0.872 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.660 4.087 14.218 16.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.305 6.305 3 C 0.314 3.686 4 O -0.379 6.379 5 C 0.062 3.938 6 N -0.287 5.287 7 C -0.385 4.385 8 H 0.099 0.901 9 C -0.191 4.191 10 N -0.541 5.541 11 Si 0.732 3.268 12 H -0.210 1.210 13 H -0.218 1.218 14 H -0.212 1.212 15 C 0.021 3.979 16 C -0.042 4.042 17 O -0.193 6.193 18 C 0.144 3.856 19 C -0.180 4.180 20 C -0.053 4.053 21 C -0.092 4.092 22 C -0.038 4.038 23 N -0.148 5.148 24 N -0.050 5.050 25 N -0.079 5.079 26 H 0.326 0.674 27 N -0.157 5.157 28 C -0.054 4.054 29 C -0.239 4.239 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.128 0.872 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.150 0.850 41 H 0.154 0.846 42 H 0.146 0.854 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.437 4.029 14.263 16.583 hybrid contribution -0.271 1.375 -1.131 1.802 sum -7.709 5.405 13.132 16.158 Atomic orbital electron populations 1.22787 0.80301 1.00842 1.01058 1.86536 1.20537 1.37270 1.86115 1.25067 0.93002 0.80143 0.70358 1.90431 1.66297 1.36223 1.44907 1.20599 0.86142 0.86118 1.00963 1.44240 1.74252 1.07939 1.02311 1.19185 1.40600 0.95582 0.83095 0.90092 1.24691 0.98166 0.98355 0.97926 1.69872 1.31371 1.26317 1.26503 0.86347 0.79705 0.77822 0.82934 1.21010 1.21771 1.21176 1.21082 0.92330 0.96834 0.87635 1.23928 0.91698 0.90844 0.97761 1.86159 1.24166 1.36198 1.72730 1.19259 0.86447 0.92205 0.87725 1.20293 0.93179 0.99587 1.04947 1.20846 0.95789 0.94122 0.94580 1.16969 0.89789 0.93909 1.08493 1.23725 0.96517 0.84435 0.99125 1.76079 0.99028 1.25469 1.14251 1.78858 1.21356 0.88863 1.15968 1.47675 1.11236 1.09376 1.39568 0.67361 1.74941 0.99067 1.23918 1.17823 1.20825 0.91632 0.98903 0.94063 1.21170 0.99717 0.95255 1.07738 0.93668 0.93283 0.90619 0.87244 0.93307 0.93093 0.90346 0.92687 0.91504 0.93851 0.85003 0.84643 0.85374 0.84974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.84 10.56 101.05 1.07 1.90 16 2 O -0.39 -8.54 10.57 -39.26 -0.41 -8.95 16 3 C 0.47 11.34 4.98 36.01 0.18 11.52 16 4 O -0.49 -12.85 13.11 -26.22 -0.34 -13.19 16 5 C 0.19 4.35 5.46 -5.19 -0.03 4.32 16 6 N -0.57 -12.93 2.05 -174.61 -0.36 -13.29 16 7 C -0.26 -6.51 9.48 -15.06 -0.14 -6.65 16 8 H 0.08 2.00 7.97 -52.49 -0.42 1.58 16 9 C 0.01 0.17 4.98 -17.43 -0.09 0.09 16 10 N -0.90 -24.62 8.78 55.49 0.49 -24.13 16 11 Si 0.90 20.95 29.64 -169.99 -5.04 15.91 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 15 C 0.15 2.67 6.11 -4.04 -0.02 2.64 16 16 C 0.04 0.62 4.84 37.16 0.18 0.80 16 17 O -0.28 -5.33 6.68 -41.82 -0.28 -5.61 16 18 C 0.19 3.33 6.39 -39.15 -0.25 3.08 16 19 C -0.16 -2.58 9.97 -39.48 -0.39 -2.97 16 20 C -0.03 -0.48 9.70 -39.29 -0.38 -0.86 16 21 C -0.09 -1.27 5.88 -104.88 -0.62 -1.89 16 22 C 0.24 3.34 7.93 -156.30 -1.24 2.10 16 23 N -0.27 -3.85 12.23 32.15 0.39 -3.45 16 24 N -0.06 -0.64 13.47 60.35 0.81 0.17 16 25 N -0.23 -2.09 7.90 60.35 0.48 -1.62 16 26 H 0.47 1.80 8.96 -340.36 -3.05 -1.25 16 27 N -0.31 -3.65 12.08 32.17 0.39 -3.26 16 28 C -0.03 -0.48 9.69 -39.29 -0.38 -0.86 16 29 C -0.22 -3.39 9.02 -39.48 -0.36 -3.75 16 30 H 0.04 0.80 7.91 -51.93 -0.41 0.39 16 31 H 0.05 0.98 8.13 -51.93 -0.42 0.56 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.11 2.72 6.22 -51.93 -0.32 2.40 16 34 H 0.05 0.97 7.82 -51.93 -0.41 0.57 16 35 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 36 H 0.08 1.27 8.04 -51.93 -0.42 0.85 16 37 H 0.05 0.88 7.85 -51.93 -0.41 0.48 16 38 H 0.07 1.32 7.65 -51.92 -0.40 0.92 16 39 H 0.04 0.61 7.66 -51.93 -0.40 0.21 16 40 H 0.13 2.05 7.84 -52.49 -0.41 1.64 16 41 H 0.14 1.74 7.88 -52.48 -0.41 1.32 16 42 H 0.13 1.58 7.88 -52.48 -0.41 1.16 16 43 H 0.13 1.88 6.28 -52.49 -0.33 1.55 16 LS Contribution 367.36 15.07 5.54 5.54 Total: -1.00 -32.88 367.36 -8.59 -41.47 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -7.78 Total: 0.94 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: -2.47 Total: 9.48 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: 2.20 Total: -45.58 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -1.04 Total: -27.75 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.04 Total: 15.91 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.88 -8.59 -41.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821662524.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.831 kcal (2) G-P(sol) polarization free energy of solvation -32.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds