Wall clock time and date at job start Wed Apr 1 2020 04:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 117.00008 * 2 1 4 4 O 1.20831 * 120.00101 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99909 * 180.02562 * 3 2 1 6 6 N 1.46503 * 109.46965 * 180.02562 * 5 3 2 7 7 C 1.36941 * 120.00058 * 276.72510 * 6 5 3 8 8 H 1.07994 * 120.00033 * 179.00283 * 7 6 5 9 9 C 1.38809 * 119.99578 * 358.99941 * 7 6 5 10 10 N 1.31622 * 120.00542 * 28.16720 * 9 7 6 11 11 Si 1.86801 * 120.00015 * 208.16880 * 9 7 6 12 12 H 1.48506 * 109.47040 * 60.00112 * 11 9 7 13 13 H 1.48497 * 109.47293 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47148 * 300.00103 * 11 9 7 15 15 C 1.46499 * 120.00200 * 96.72703 * 6 5 3 16 16 C 1.53005 * 109.47253 * 269.99778 * 15 6 5 17 17 O 1.42907 * 109.46893 * 64.99781 * 16 15 6 18 18 C 1.35872 * 116.99868 * 180.02562 * 17 16 15 19 19 C 1.38825 * 119.93462 * 180.02562 * 18 17 16 20 20 C 1.37913 * 120.05781 * 180.02562 * 19 18 17 21 21 C 1.39347 * 119.94109 * 359.97438 * 20 19 18 22 22 C 1.48433 * 120.06386 * 179.97438 * 21 20 19 23 23 N 1.34059 * 126.67139 * 0.02562 * 22 21 20 24 24 N 1.28994 * 107.26007 * 179.97438 * 23 22 21 25 25 N 1.28720 * 108.94780 * 359.97438 * 24 23 22 26 26 H 0.97005 * 125.33875 * 179.97438 * 25 24 23 27 27 N 1.28873 * 109.32541 * 0.02562 * 25 24 23 28 28 C 1.39338 * 119.87413 * 0.25201 * 21 20 19 29 29 C 1.37920 * 119.94004 * 359.51773 * 28 21 20 30 30 H 1.09002 * 109.46945 * 299.99619 * 1 2 3 31 31 H 1.09001 * 109.47325 * 59.99713 * 1 2 3 32 32 H 1.08994 * 109.47080 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47604 * 60.00090 * 5 3 2 34 34 H 1.08997 * 109.47094 * 299.99753 * 5 3 2 35 35 H 0.96998 * 120.00378 * 179.97438 * 10 9 7 36 36 H 1.08999 * 109.47495 * 150.00104 * 15 6 5 37 37 H 1.09001 * 109.47299 * 29.99513 * 15 6 5 38 38 H 1.09007 * 109.46885 * 305.00470 * 16 15 6 39 39 H 1.08992 * 109.47317 * 184.99955 * 16 15 6 40 40 H 1.07997 * 119.97166 * 359.97438 * 19 18 17 41 41 H 1.08004 * 120.03198 * 180.02562 * 20 19 18 42 42 H 1.08003 * 120.03565 * 179.72675 * 28 21 20 43 43 H 1.07995 * 119.96983 * 180.22792 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.0422 3.3765 -1.1772 8 1 4.3328 4.4166 -1.1748 9 6 3.7299 2.7458 -2.3737 10 7 2.8850 1.7366 -2.3848 11 14 4.5089 3.3292 -3.9681 12 1 5.9856 3.2052 -3.8719 13 1 4.0151 2.4964 -5.0941 14 1 4.1458 4.7494 -4.2058 15 6 4.3325 3.3393 1.2604 16 6 3.0808 3.9750 1.8689 17 8 2.1509 2.9499 2.2247 18 6 0.9774 3.3480 2.7819 19 6 0.0300 2.4028 3.1513 20 6 -1.1622 2.8041 3.7166 21 6 -1.4153 4.1596 3.9175 22 6 -2.6977 4.5945 4.5252 23 7 -3.7014 3.8030 4.9291 24 7 -4.6280 4.5686 5.3974 25 7 -4.2452 5.7939 5.3027 26 1 -4.7603 6.5660 5.5848 27 7 -3.0709 5.8342 4.7735 28 6 -0.4645 5.1063 3.5414 29 6 0.7280 4.6991 2.9809 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.9558 0.7810 -0.8908 34 1 3.9564 0.7806 0.8891 35 1 2.6665 1.2961 -3.2209 36 1 5.0771 4.1124 1.0710 37 1 4.7404 2.6040 1.9540 38 1 2.6227 4.6444 1.1408 39 1 3.3566 4.5403 2.7591 40 1 0.2264 1.3524 2.9950 41 1 -1.8988 2.0684 4.0042 42 1 -0.6598 6.1578 3.6919 43 1 1.4668 5.4323 2.6927 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821662524.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:39 Heat of formation + Delta-G solvation = 48.647029 kcal Electronic energy + Delta-G solvation = -30981.754146 eV Core-core repulsion = 26645.643421 eV Total energy + Delta-G solvation = -4336.110724 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -45.42866 -41.04724 -40.42536 -38.70556 -37.47141 -36.13923 -35.31884 -34.38918 -33.53012 -32.11701 -31.12957 -30.27792 -29.09352 -27.55932 -25.85293 -25.65351 -24.95434 -23.65855 -22.57828 -22.01618 -21.37578 -20.14295 -19.26375 -18.59500 -18.11503 -17.84300 -17.50916 -17.33993 -16.79919 -16.60948 -16.36158 -16.24420 -15.64324 -15.36823 -15.00883 -14.90236 -14.55922 -14.29736 -14.00454 -13.85371 -13.65679 -13.62648 -13.38995 -13.07151 -12.80703 -12.73078 -12.62329 -12.52465 -12.38386 -12.24775 -12.23128 -12.09142 -11.95875 -11.77412 -11.66002 -11.26207 -11.11042 -10.70135 -10.31478 -10.02646 -9.03568 -8.95340 -7.92301 -5.12256 -0.19647 0.21653 0.37532 1.35986 1.45211 1.50483 1.54427 1.59897 2.36018 2.41601 2.51794 2.67855 2.72353 2.84649 3.18970 3.29045 3.60425 3.87231 3.95944 4.19543 4.27878 4.38471 4.43137 4.45456 4.48687 4.50828 4.55714 4.58256 4.65146 4.68941 4.77497 4.94077 5.03093 5.03547 5.21954 5.24759 5.36725 5.39160 5.42697 5.64168 5.69535 5.74295 6.18591 6.27304 6.62160 7.08261 7.14105 7.73952 7.95660 8.23585 9.16985 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.016519 B = 0.002856 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.627333 B = 9800.962534 C =10249.891932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.395 6.395 3 C 0.476 3.524 4 O -0.520 6.520 5 C 0.190 3.810 6 N -0.580 5.580 7 C -0.252 4.252 8 H 0.084 0.916 9 C -0.046 4.046 10 N -0.922 5.922 11 Si 0.960 3.040 12 H -0.275 1.275 13 H -0.304 1.304 14 H -0.287 1.287 15 C 0.142 3.858 16 C 0.043 3.957 17 O -0.303 6.303 18 C 0.166 3.834 19 C -0.171 4.171 20 C -0.032 4.032 21 C -0.088 4.088 22 C 0.225 3.775 23 N -0.298 5.298 24 N -0.057 5.057 25 N -0.201 5.201 26 H 0.494 0.506 27 N -0.302 5.302 28 C -0.032 4.032 29 C -0.223 4.223 30 H 0.051 0.949 31 H 0.027 0.973 32 H 0.117 0.883 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.247 0.753 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.036 0.964 39 H 0.081 0.919 40 H 0.129 0.871 41 H 0.149 0.851 42 H 0.148 0.852 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.039 5.193 15.819 18.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.313 6.313 3 C 0.317 3.683 4 O -0.406 6.406 5 C 0.062 3.938 6 N -0.300 5.300 7 C -0.381 4.381 8 H 0.102 0.898 9 C -0.241 4.241 10 N -0.569 5.569 11 Si 0.789 3.211 12 H -0.201 1.201 13 H -0.231 1.231 14 H -0.213 1.213 15 C 0.016 3.984 16 C -0.034 4.034 17 O -0.214 6.214 18 C 0.118 3.882 19 C -0.189 4.189 20 C -0.052 4.052 21 C -0.092 4.092 22 C -0.054 4.054 23 N -0.171 5.171 24 N -0.052 5.052 25 N -0.052 5.052 26 H 0.353 0.647 27 N -0.155 5.155 28 C -0.052 4.052 29 C -0.242 4.242 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.135 0.865 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.057 0.943 36 H 0.115 0.885 37 H 0.096 0.904 38 H 0.055 0.945 39 H 0.098 0.902 40 H 0.147 0.853 41 H 0.166 0.834 42 H 0.165 0.835 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.817 5.156 15.907 18.459 hybrid contribution -0.299 1.112 -1.484 1.878 sum -8.116 6.268 14.423 17.697 Atomic orbital electron populations 1.23003 0.78328 1.03342 1.00258 1.86495 1.22497 1.36473 1.85792 1.25202 0.93421 0.80120 0.69537 1.90409 1.66959 1.37079 1.46154 1.20518 0.85768 0.86548 1.01014 1.44393 1.74272 1.07973 1.03376 1.19478 1.38681 0.95719 0.84230 0.89783 1.25312 0.99124 0.99235 1.00435 1.70028 1.33022 1.27856 1.26031 0.85450 0.79154 0.76759 0.79711 1.20113 1.23083 1.21341 1.21370 0.92990 0.97826 0.86177 1.23753 0.90832 0.90340 0.98497 1.86110 1.24982 1.36887 1.73458 1.19505 0.86485 0.93270 0.88938 1.20368 0.93641 0.99430 1.05496 1.20969 0.95439 0.94688 0.94056 1.17124 0.90221 0.93975 1.07840 1.23623 0.96559 0.85052 1.00178 1.76065 0.99469 1.26379 1.15154 1.78807 1.20898 0.89480 1.15983 1.47739 1.10368 1.09654 1.37454 0.64717 1.74894 0.99874 1.23128 1.17612 1.21014 0.90986 0.99853 0.93333 1.21305 1.00460 0.94755 1.07693 0.93075 0.95445 0.86478 0.89645 0.90560 0.94322 0.88509 0.90442 0.94508 0.90153 0.85322 0.83359 0.83451 0.84100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.65 10.56 113.37 1.20 2.85 16 2 O -0.39 -17.50 10.57 -51.42 -0.54 -18.04 16 3 C 0.48 23.01 4.98 71.24 0.35 23.36 16 4 O -0.52 -27.47 13.11 29.09 0.38 -27.09 16 5 C 0.19 8.73 5.46 85.63 0.47 9.19 16 6 N -0.58 -26.19 2.05 -706.35 -1.45 -27.64 16 7 C -0.25 -12.77 9.48 84.03 0.80 -11.97 16 8 H 0.08 4.12 7.97 -2.91 -0.02 4.09 16 9 C -0.05 -2.46 4.98 84.86 0.42 -2.04 16 10 N -0.92 -51.94 8.78 21.65 0.19 -51.75 16 11 Si 0.96 43.75 29.64 68.60 2.03 45.78 16 12 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 13 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 14 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 15 C 0.14 4.88 6.11 86.38 0.53 5.41 16 16 C 0.04 1.45 4.84 71.98 0.35 1.80 16 17 O -0.30 -11.33 6.68 -70.61 -0.47 -11.80 16 18 C 0.17 5.71 6.39 22.55 0.14 5.85 16 19 C -0.17 -5.44 9.97 22.33 0.22 -5.21 16 20 C -0.03 -0.89 9.70 22.46 0.22 -0.67 16 21 C -0.09 -2.44 5.88 -20.03 -0.12 -2.56 16 22 C 0.23 5.87 7.93 137.37 1.09 6.96 16 23 N -0.30 -7.88 12.23 -52.19 -0.64 -8.52 16 24 N -0.06 -1.20 13.47 37.02 0.50 -0.71 16 25 N -0.20 -3.09 7.90 37.02 0.29 -2.79 16 26 H 0.49 2.25 8.96 -347.53 -3.12 -0.86 16 27 N -0.30 -6.50 12.08 -52.14 -0.63 -7.13 16 28 C -0.03 -0.85 9.69 22.46 0.22 -0.64 16 29 C -0.22 -6.70 9.02 22.34 0.20 -6.50 16 30 H 0.05 1.79 7.91 -2.39 -0.02 1.78 16 31 H 0.03 1.10 8.13 -2.39 -0.02 1.08 16 32 H 0.12 3.25 8.14 -2.39 -0.02 3.23 16 33 H 0.09 4.34 6.22 -2.39 -0.01 4.33 16 34 H 0.08 2.99 7.82 -2.39 -0.02 2.97 16 35 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 36 H 0.10 2.93 8.04 -2.39 -0.02 2.91 16 37 H 0.08 2.31 7.85 -2.39 -0.02 2.29 16 38 H 0.04 1.44 7.65 -2.38 -0.02 1.43 16 39 H 0.08 2.07 7.66 -2.39 -0.02 2.05 16 40 H 0.13 4.06 7.84 -2.91 -0.02 4.03 16 41 H 0.15 3.70 7.88 -2.91 -0.02 3.68 16 42 H 0.15 3.31 7.88 -2.91 -0.02 3.29 16 43 H 0.14 3.86 6.28 -2.91 -0.02 3.84 16 Total: -1.00 -71.43 367.36 3.71 -67.71 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -2.04 Total: 16.14 kcal Atomic # 6 Polarization: 19.74 SS G_CDS: 6.09 Total: 25.83 kcal Atomic # 7 Polarization: -96.80 SS G_CDS: -1.74 Total: -98.53 kcal Atomic # 8 Polarization: -56.30 SS G_CDS: -0.63 Total: -56.93 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -71.43 3.71 -67.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821662524.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.361 kcal (2) G-P(sol) polarization free energy of solvation -71.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds