Wall clock time and date at job start Wed Apr 1 2020 04:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34233 * 116.99857 * 2 1 4 4 O 1.20822 * 119.99851 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99632 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47040 * 180.02562 * 5 3 2 7 7 C 1.36944 * 120.00017 * 264.02255 * 6 5 3 8 8 H 1.07998 * 120.00090 * 196.14052 * 7 6 5 9 9 C 1.38817 * 119.99834 * 16.15156 * 7 6 5 10 10 N 1.31616 * 119.99766 * 22.31938 * 9 7 6 11 11 Si 1.86798 * 119.99632 * 202.32667 * 9 7 6 12 12 H 1.48495 * 109.47508 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.46927 * 119.99929 * 11 9 7 14 14 H 1.48500 * 109.46858 * 239.99516 * 11 9 7 15 15 C 1.46498 * 120.00355 * 84.01920 * 6 5 3 16 16 C 1.53007 * 109.47026 * 90.00307 * 15 6 5 17 17 O 1.42900 * 109.47124 * 65.00147 * 16 15 6 18 18 C 1.35839 * 116.99827 * 180.02562 * 17 16 15 19 19 C 1.38589 * 120.11826 * 359.97438 * 18 17 16 20 20 C 1.38175 * 120.05642 * 180.02562 * 19 18 17 21 21 C 1.38376 * 120.30093 * 359.97307 * 20 19 18 22 22 C 1.38013 * 120.23219 * 0.02562 * 21 20 19 23 23 C 1.39268 * 119.93672 * 0.02562 * 22 21 20 24 24 C 1.48396 * 120.14402 * 180.02562 * 23 22 21 25 25 N 1.34067 * 126.67311 * 179.66820 * 24 23 22 26 26 N 1.28996 * 107.26483 * 179.83438 * 25 24 23 27 27 N 1.28724 * 108.94685 * 0.43573 * 26 25 24 28 28 H 0.97001 * 125.33972 * 179.75984 * 27 26 25 29 29 N 1.28871 * 109.32748 * 359.72210 * 27 26 25 30 30 H 1.09003 * 109.46790 * 59.99737 * 1 2 3 31 31 H 1.08998 * 109.47205 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46972 * 300.00188 * 1 2 3 33 33 H 1.08999 * 109.47656 * 60.00409 * 5 3 2 34 34 H 1.08999 * 109.47312 * 299.99539 * 5 3 2 35 35 H 0.97006 * 119.99413 * 179.97438 * 10 9 7 36 36 H 1.08999 * 109.47101 * 330.00887 * 15 6 5 37 37 H 1.08995 * 109.47514 * 210.00444 * 15 6 5 38 38 H 1.09005 * 109.46760 * 305.00550 * 16 15 6 39 39 H 1.09004 * 109.47214 * 185.00381 * 16 15 6 40 40 H 1.07996 * 119.97108 * 359.97438 * 19 18 17 41 41 H 1.08005 * 119.84635 * 179.70017 * 20 19 18 42 42 H 1.08001 * 119.88709 * 180.02562 * 21 20 19 43 43 H 1.08011 * 120.03153 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 4.2938 3.3021 -1.1791 8 1 4.8408 4.2332 -1.1700 9 6 3.9069 2.7362 -2.3862 10 7 2.9033 1.8854 -2.4223 11 14 4.8107 3.1820 -3.9589 12 1 5.8915 4.1525 -3.6507 13 1 5.4005 1.9565 -4.5553 14 1 3.8582 3.7917 -4.9213 15 6 4.0632 3.4189 1.2624 16 6 5.4675 3.2693 1.8512 17 8 6.4164 3.8948 0.9849 18 6 7.7200 3.8515 1.3643 19 6 8.0801 3.2214 2.5449 20 6 9.4064 3.1786 2.9298 21 6 10.3816 3.7626 2.1407 22 6 10.0367 4.3932 0.9626 23 6 8.7027 4.4431 0.5657 24 6 8.3266 5.1195 -0.7005 25 7 7.0916 5.2390 -1.2083 26 7 7.1943 5.8945 -2.3145 27 7 8.4333 6.1775 -2.5192 28 1 8.7789 6.6633 -3.2843 29 7 9.1426 5.7148 -1.5478 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 3.9557 0.7810 -0.8908 34 1 3.9564 0.7806 0.8892 35 1 2.6327 1.4903 -3.2659 36 1 3.3306 3.0208 1.9645 37 1 3.8561 4.4733 1.0800 38 1 5.7089 2.2110 1.9508 39 1 5.5027 3.7439 2.8319 40 1 7.3233 2.7642 3.1651 41 1 9.6827 2.6909 3.8531 42 1 11.4164 3.7247 2.4478 43 1 10.8005 4.8483 0.3493 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821662792.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:44 Heat of formation + Delta-G solvation = 72.927594 kcal Electronic energy + Delta-G solvation = -31324.141138 eV Core-core repulsion = 26989.083298 eV Total energy + Delta-G solvation = -4335.057840 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.95122 -39.86180 -38.90299 -37.31849 -35.75860 -34.47578 -33.95988 -33.22517 -31.61333 -30.42746 -29.91836 -28.74473 -27.49707 -25.86308 -24.61215 -24.01340 -23.67505 -21.95696 -21.40772 -20.64652 -19.52228 -18.92467 -17.77569 -16.76964 -16.67584 -16.25371 -16.15446 -15.59752 -15.48969 -15.11324 -14.97932 -14.53918 -14.42964 -13.91262 -13.49609 -13.41120 -13.27564 -13.01318 -12.56858 -12.44898 -12.10591 -11.91970 -11.63804 -11.45573 -11.32624 -11.07752 -10.95949 -10.93684 -10.82970 -10.71855 -10.60041 -10.49195 -10.28878 -10.25443 -9.81171 -9.59409 -9.54560 -9.06782 -8.73406 -8.35808 -7.86117 -6.89927 -5.69655 -2.99549 0.93202 1.54275 1.66933 2.61628 2.75920 3.51057 3.59963 3.64678 3.71957 3.89206 3.93471 4.07454 4.08566 4.57546 4.68054 4.94580 5.05177 5.23925 5.29448 5.45189 5.52196 5.64121 5.67135 5.71169 5.81947 5.86558 5.87823 5.91247 5.94709 6.03031 6.12779 6.30661 6.32704 6.40310 6.42062 6.52421 6.65035 6.75946 6.84257 6.86663 7.12970 7.77680 7.84942 8.17928 8.36498 8.67996 9.27610 9.44048 9.91985 10.32290 11.42705 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.011187 B = 0.004358 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.291116 B = 6422.977194 C = 8369.998192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.384 6.384 3 C 0.464 3.536 4 O -0.506 6.506 5 C 0.187 3.813 6 N -0.559 5.559 7 C -0.225 4.225 8 H 0.108 0.892 9 C -0.009 4.009 10 N -0.916 5.916 11 Si 0.895 3.105 12 H -0.256 1.256 13 H -0.301 1.301 14 H -0.299 1.299 15 C 0.147 3.853 16 C 0.037 3.963 17 O -0.254 6.254 18 C 0.183 3.817 19 C -0.221 4.221 20 C -0.060 4.060 21 C -0.177 4.177 22 C -0.043 4.043 23 C -0.060 4.060 24 C 0.220 3.780 25 N -0.212 5.212 26 N -0.046 5.046 27 N -0.245 5.245 28 H 0.468 0.532 29 N -0.314 5.314 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.044 0.956 33 H 0.115 0.885 34 H 0.047 0.953 35 H 0.250 0.750 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.050 0.950 40 H 0.134 0.866 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.354 2.069 9.101 15.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.301 6.301 3 C 0.304 3.696 4 O -0.391 6.391 5 C 0.057 3.943 6 N -0.277 5.277 7 C -0.354 4.354 8 H 0.126 0.874 9 C -0.204 4.204 10 N -0.564 5.564 11 Si 0.726 3.274 12 H -0.180 1.180 13 H -0.228 1.228 14 H -0.227 1.227 15 C 0.020 3.980 16 C -0.041 4.041 17 O -0.164 6.164 18 C 0.132 3.868 19 C -0.240 4.240 20 C -0.079 4.079 21 C -0.196 4.196 22 C -0.063 4.063 23 C -0.064 4.064 24 C -0.059 4.059 25 N -0.085 5.085 26 N -0.042 5.042 27 N -0.088 5.088 28 H 0.321 0.679 29 N -0.167 5.167 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.132 0.868 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.152 0.848 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 11.511 2.649 8.296 14.434 hybrid contribution 0.433 0.101 -1.130 1.214 sum 11.944 2.749 7.166 14.197 Atomic orbital electron populations 1.22845 0.79968 1.01227 1.01219 1.86556 1.20889 1.36917 1.85768 1.25682 0.93595 0.80144 0.70220 1.90464 1.66694 1.36473 1.45480 1.20367 0.85315 0.87211 1.01403 1.44096 1.74086 1.06670 1.02852 1.19858 1.26373 1.07355 0.81781 0.87447 1.24786 0.97177 1.00557 0.97912 1.69884 1.25899 1.35389 1.25188 0.86252 0.80406 0.77547 0.83242 1.17960 1.22837 1.22729 1.20836 0.89993 0.98178 0.89025 1.23969 0.91436 0.96482 0.92239 1.86575 1.11441 1.71235 1.47111 1.19149 0.85555 0.90987 0.91098 1.21222 0.97859 1.06778 0.98128 1.21041 0.92231 0.96052 0.98592 1.20841 0.99562 1.03080 0.96088 1.20938 0.93551 0.96070 0.95789 1.16536 0.92518 1.05849 0.91510 1.23433 0.86476 0.99442 0.96560 1.76560 1.19736 1.11278 1.00910 1.79175 1.01145 1.11225 1.12652 1.47735 1.04186 1.38188 1.18717 0.67920 1.74750 1.24760 1.17362 0.99823 0.92870 0.90228 0.93693 0.86769 0.93474 0.93948 0.92058 0.91644 0.92544 0.93165 0.84848 0.85814 0.85733 0.84915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.56 101.05 1.07 1.83 16 2 O -0.38 -8.43 10.57 -39.27 -0.41 -8.85 16 3 C 0.46 11.37 6.18 36.00 0.22 11.59 16 4 O -0.51 -13.97 15.88 -18.75 -0.30 -14.27 16 5 C 0.19 4.35 5.48 -5.20 -0.03 4.32 16 6 N -0.56 -13.43 2.01 -174.61 -0.35 -13.78 16 7 C -0.22 -6.06 9.17 -15.05 -0.14 -6.20 16 8 H 0.11 2.93 6.60 -52.49 -0.35 2.58 16 9 C -0.01 -0.25 4.86 -17.43 -0.08 -0.33 16 10 N -0.92 -26.89 9.32 55.49 0.52 -26.37 16 11 Si 0.89 22.69 29.61 -169.99 -5.03 17.66 16 12 H -0.26 -6.16 6.26 56.52 0.35 -5.81 16 13 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 14 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 15 C 0.15 2.91 6.07 -4.04 -0.02 2.89 16 16 C 0.04 0.59 5.08 37.16 0.19 0.78 16 17 O -0.25 -4.72 7.86 -19.24 -0.15 -4.87 16 18 C 0.18 2.94 6.69 -38.88 -0.26 2.68 16 19 C -0.22 -2.83 9.03 -39.48 -0.36 -3.18 16 20 C -0.06 -0.64 10.03 -39.55 -0.40 -1.04 16 21 C -0.18 -1.87 10.03 -39.61 -0.40 -2.27 16 22 C -0.04 -0.54 9.70 -39.28 -0.38 -0.92 16 23 C -0.06 -0.95 5.89 -104.76 -0.62 -1.57 16 24 C 0.22 3.88 7.91 -156.29 -1.24 2.64 16 25 N -0.21 -4.30 9.87 32.15 0.32 -3.98 16 26 N -0.05 -0.85 12.64 60.35 0.76 -0.09 16 27 N -0.24 -3.39 7.90 60.35 0.48 -2.92 16 28 H 0.47 4.01 8.96 -340.37 -3.05 0.96 16 29 N -0.31 -4.76 12.08 32.16 0.39 -4.37 16 30 H 0.05 1.04 8.13 -51.93 -0.42 0.61 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.04 0.76 8.13 -51.93 -0.42 0.34 16 33 H 0.11 2.94 6.36 -51.93 -0.33 2.61 16 34 H 0.05 0.92 8.11 -51.93 -0.42 0.50 16 35 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 37 H 0.07 1.38 8.04 -51.93 -0.42 0.96 16 38 H 0.06 0.87 7.66 -51.93 -0.40 0.47 16 39 H 0.05 0.66 7.66 -51.93 -0.40 0.26 16 40 H 0.13 1.49 6.30 -52.49 -0.33 1.16 16 41 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 42 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.13 1.46 7.88 -52.48 -0.41 1.04 16 LS Contribution 369.38 15.07 5.57 5.57 Total: -1.00 -36.26 369.38 -8.48 -44.75 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -7.82 Total: 0.28 kcal Atomic # 6 Polarization: 13.68 SS G_CDS: -2.44 Total: 11.24 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 2.11 Total: -51.51 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.86 Total: -27.99 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.03 Total: 17.66 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.26 -8.48 -44.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821662792.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.674 kcal (2) G-P(sol) polarization free energy of solvation -36.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds