Wall clock time and date at job start Wed Apr 1 2020 04:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34233 * 116.99857 * 2 1 4 4 O 1.20822 * 119.99851 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99632 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47040 * 180.02562 * 5 3 2 7 7 C 1.36944 * 120.00017 * 264.02255 * 6 5 3 8 8 H 1.07998 * 120.00090 * 196.14052 * 7 6 5 9 9 C 1.38817 * 119.99834 * 16.15156 * 7 6 5 10 10 N 1.31616 * 119.99766 * 22.31938 * 9 7 6 11 11 Si 1.86798 * 119.99632 * 202.32667 * 9 7 6 12 12 H 1.48495 * 109.47508 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.46927 * 119.99929 * 11 9 7 14 14 H 1.48500 * 109.46858 * 239.99516 * 11 9 7 15 15 C 1.46498 * 120.00355 * 84.01920 * 6 5 3 16 16 C 1.53007 * 109.47026 * 90.00307 * 15 6 5 17 17 O 1.42900 * 109.47124 * 65.00147 * 16 15 6 18 18 C 1.35839 * 116.99827 * 180.02562 * 17 16 15 19 19 C 1.38589 * 120.11826 * 359.97438 * 18 17 16 20 20 C 1.38175 * 120.05642 * 180.02562 * 19 18 17 21 21 C 1.38376 * 120.30093 * 359.97307 * 20 19 18 22 22 C 1.38013 * 120.23219 * 0.02562 * 21 20 19 23 23 C 1.39268 * 119.93672 * 0.02562 * 22 21 20 24 24 C 1.48396 * 120.14402 * 180.02562 * 23 22 21 25 25 N 1.34067 * 126.67311 * 179.66820 * 24 23 22 26 26 N 1.28996 * 107.26483 * 179.83438 * 25 24 23 27 27 N 1.28724 * 108.94685 * 0.43573 * 26 25 24 28 28 H 0.97001 * 125.33972 * 179.75984 * 27 26 25 29 29 N 1.28871 * 109.32748 * 359.72210 * 27 26 25 30 30 H 1.09003 * 109.46790 * 59.99737 * 1 2 3 31 31 H 1.08998 * 109.47205 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46972 * 300.00188 * 1 2 3 33 33 H 1.08999 * 109.47656 * 60.00409 * 5 3 2 34 34 H 1.08999 * 109.47312 * 299.99539 * 5 3 2 35 35 H 0.97006 * 119.99413 * 179.97438 * 10 9 7 36 36 H 1.08999 * 109.47101 * 330.00887 * 15 6 5 37 37 H 1.08995 * 109.47514 * 210.00444 * 15 6 5 38 38 H 1.09005 * 109.46760 * 305.00550 * 16 15 6 39 39 H 1.09004 * 109.47214 * 185.00381 * 16 15 6 40 40 H 1.07996 * 119.97108 * 359.97438 * 19 18 17 41 41 H 1.08005 * 119.84635 * 179.70017 * 20 19 18 42 42 H 1.08001 * 119.88709 * 180.02562 * 21 20 19 43 43 H 1.08011 * 120.03153 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 4.2938 3.3021 -1.1791 8 1 4.8408 4.2332 -1.1700 9 6 3.9069 2.7362 -2.3862 10 7 2.9033 1.8854 -2.4223 11 14 4.8107 3.1820 -3.9589 12 1 5.8915 4.1525 -3.6507 13 1 5.4005 1.9565 -4.5553 14 1 3.8582 3.7917 -4.9213 15 6 4.0632 3.4189 1.2624 16 6 5.4675 3.2693 1.8512 17 8 6.4164 3.8948 0.9849 18 6 7.7200 3.8515 1.3643 19 6 8.0801 3.2214 2.5449 20 6 9.4064 3.1786 2.9298 21 6 10.3816 3.7626 2.1407 22 6 10.0367 4.3932 0.9626 23 6 8.7027 4.4431 0.5657 24 6 8.3266 5.1195 -0.7005 25 7 7.0916 5.2390 -1.2083 26 7 7.1943 5.8945 -2.3145 27 7 8.4333 6.1775 -2.5192 28 1 8.7789 6.6633 -3.2843 29 7 9.1426 5.7148 -1.5478 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 3.9557 0.7810 -0.8908 34 1 3.9564 0.7806 0.8892 35 1 2.6327 1.4903 -3.2659 36 1 3.3306 3.0208 1.9645 37 1 3.8561 4.4733 1.0800 38 1 5.7089 2.2110 1.9508 39 1 5.5027 3.7439 2.8319 40 1 7.3233 2.7642 3.1651 41 1 9.6827 2.6909 3.8531 42 1 11.4164 3.7247 2.4478 43 1 10.8005 4.8483 0.3493 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821662792.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:43 Heat of formation + Delta-G solvation = 48.749330 kcal Electronic energy + Delta-G solvation = -31325.189587 eV Core-core repulsion = 26989.083298 eV Total energy + Delta-G solvation = -4336.106288 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.21165 -40.96658 -40.72028 -38.52355 -37.45929 -36.35902 -35.20625 -34.42253 -33.48675 -31.49030 -31.22620 -30.15926 -29.16100 -27.58148 -25.86047 -25.28269 -25.17696 -23.37787 -22.52311 -22.06606 -21.28189 -20.11819 -18.92448 -18.63586 -18.09888 -17.94777 -17.35852 -17.09684 -16.90738 -16.67586 -16.45262 -16.22042 -15.51716 -15.32784 -15.02869 -14.91943 -14.59863 -14.38119 -13.96279 -13.95792 -13.64729 -13.27779 -13.11369 -12.85768 -12.83602 -12.65987 -12.49964 -12.39416 -12.28499 -12.18355 -12.11497 -11.86089 -11.71972 -11.65411 -11.60137 -11.40558 -11.36242 -11.00787 -10.42217 -9.69824 -8.91468 -8.84895 -7.81198 -5.09072 -0.10880 0.40669 0.61027 1.44094 1.49308 1.55742 1.59789 1.69854 2.01032 2.36632 2.50505 2.66870 2.91516 2.97340 3.40304 3.41898 3.61835 4.04568 4.10381 4.35132 4.37835 4.41041 4.45473 4.48126 4.53621 4.55493 4.57902 4.62023 4.67803 4.69005 4.73820 4.88833 4.97105 5.07360 5.20866 5.27279 5.45050 5.51915 5.62890 5.76914 5.95067 5.96908 6.03539 6.39476 6.74548 7.21651 7.39642 7.53636 7.93317 8.28757 9.28995 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.011187 B = 0.004358 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.291116 B = 6422.977194 C = 8369.998192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.387 6.387 3 C 0.467 3.533 4 O -0.545 6.545 5 C 0.187 3.813 6 N -0.573 5.573 7 C -0.204 4.204 8 H 0.102 0.898 9 C -0.063 4.063 10 N -0.942 5.942 11 Si 0.940 3.060 12 H -0.241 1.241 13 H -0.310 1.310 14 H -0.315 1.315 15 C 0.146 3.854 16 C 0.047 3.953 17 O -0.290 6.290 18 C 0.154 3.846 19 C -0.222 4.222 20 C -0.051 4.051 21 C -0.165 4.165 22 C -0.046 4.046 23 C -0.091 4.091 24 C 0.209 3.791 25 N -0.257 5.257 26 N -0.077 5.077 27 N -0.215 5.215 28 H 0.488 0.512 29 N -0.302 5.302 30 H 0.031 0.969 31 H 0.125 0.875 32 H 0.055 0.945 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.238 0.762 36 H 0.076 0.924 37 H 0.043 0.957 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.150 0.850 41 H 0.162 0.838 42 H 0.161 0.839 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.909 1.334 11.731 19.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.303 6.303 3 C 0.309 3.691 4 O -0.433 6.433 5 C 0.058 3.942 6 N -0.292 5.292 7 C -0.334 4.334 8 H 0.120 0.880 9 C -0.255 4.255 10 N -0.592 5.592 11 Si 0.772 3.228 12 H -0.164 1.164 13 H -0.238 1.238 14 H -0.244 1.244 15 C 0.020 3.980 16 C -0.030 4.030 17 O -0.201 6.201 18 C 0.104 3.896 19 C -0.241 4.241 20 C -0.069 4.069 21 C -0.183 4.183 22 C -0.066 4.066 23 C -0.095 4.095 24 C -0.070 4.070 25 N -0.128 5.128 26 N -0.072 5.072 27 N -0.065 5.065 28 H 0.345 0.655 29 N -0.156 5.156 30 H 0.050 0.950 31 H 0.144 0.856 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.047 0.953 36 H 0.094 0.906 37 H 0.061 0.939 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.167 0.833 41 H 0.180 0.820 42 H 0.178 0.822 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 14.098 1.926 10.953 17.956 hybrid contribution -0.236 0.352 -1.817 1.865 sum 13.862 2.278 9.136 16.758 Atomic orbital electron populations 1.23152 0.77613 1.04101 1.00687 1.86509 1.23170 1.35491 1.85179 1.25839 0.94091 0.80148 0.69044 1.90439 1.67626 1.37800 1.47422 1.20383 0.84785 0.87038 1.02031 1.44235 1.74283 1.07301 1.03391 1.19986 1.24110 1.06382 0.82944 0.88022 1.25277 0.98381 1.01876 0.99934 1.70027 1.27502 1.37199 1.24498 0.85517 0.79620 0.76967 0.80673 1.16396 1.23804 1.24422 1.20984 0.92956 0.96413 0.87631 1.23690 0.88925 0.97524 0.92869 1.86495 1.12969 1.72218 1.48420 1.19420 0.84487 0.92909 0.92777 1.21476 0.99491 1.06101 0.97015 1.21512 0.91107 0.94773 0.99546 1.21298 1.01405 1.00950 0.94671 1.21172 0.92364 0.96235 0.96806 1.16900 0.94005 1.07203 0.91384 1.23913 0.85932 0.99655 0.97516 1.76511 1.21595 1.12837 1.01900 1.79074 1.02770 1.12387 1.12979 1.47782 1.03196 1.36672 1.18802 0.65456 1.74722 1.24180 1.17009 0.99650 0.95003 0.85646 0.92669 0.89419 0.89178 0.95257 0.90576 0.93865 0.91441 0.89712 0.83281 0.82034 0.82187 0.83801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.35 10.56 113.37 1.20 2.55 16 2 O -0.39 -16.76 10.57 -51.45 -0.54 -17.30 16 3 C 0.47 23.02 6.18 71.23 0.44 23.46 16 4 O -0.54 -30.58 15.88 21.97 0.35 -30.23 16 5 C 0.19 8.72 5.48 85.63 0.47 9.19 16 6 N -0.57 -27.83 2.01 -706.34 -1.42 -29.25 16 7 C -0.20 -11.29 9.17 84.03 0.77 -10.52 16 8 H 0.10 5.73 6.60 -2.91 -0.02 5.71 16 9 C -0.06 -3.64 4.86 84.86 0.41 -3.23 16 10 N -0.94 -57.27 9.32 21.65 0.20 -57.07 16 11 Si 0.94 48.64 29.61 68.60 2.03 50.67 16 12 H -0.24 -11.72 6.26 99.48 0.62 -11.09 16 13 H -0.31 -16.25 7.11 99.48 0.71 -15.54 16 14 H -0.32 -16.93 7.11 99.48 0.71 -16.22 16 15 C 0.15 5.74 6.07 86.38 0.52 6.26 16 16 C 0.05 1.45 5.08 71.98 0.37 1.82 16 17 O -0.29 -10.70 7.86 -91.74 -0.72 -11.42 16 18 C 0.15 4.76 6.69 22.72 0.15 4.91 16 19 C -0.22 -4.98 9.03 22.34 0.20 -4.78 16 20 C -0.05 -0.84 10.03 22.29 0.22 -0.62 16 21 C -0.17 -2.76 10.03 22.25 0.22 -2.54 16 22 C -0.05 -1.03 9.70 22.46 0.22 -0.81 16 23 C -0.09 -2.79 5.89 -19.96 -0.12 -2.91 16 24 C 0.21 7.36 7.91 137.35 1.09 8.45 16 25 N -0.26 -10.63 9.87 -52.21 -0.52 -11.14 16 26 N -0.08 -2.86 12.64 37.02 0.47 -2.39 16 27 N -0.22 -5.88 7.90 37.02 0.29 -5.58 16 28 H 0.49 7.88 8.96 -347.53 -3.12 4.77 16 29 N -0.30 -8.93 12.08 -52.16 -0.63 -9.56 16 30 H 0.03 1.24 8.13 -2.39 -0.02 1.22 16 31 H 0.13 3.19 8.14 -2.39 -0.02 3.17 16 32 H 0.05 1.81 8.13 -2.39 -0.02 1.79 16 33 H 0.09 4.61 6.36 -2.39 -0.02 4.59 16 34 H 0.09 3.35 8.11 -2.39 -0.02 3.33 16 35 H 0.24 14.55 8.31 -92.70 -0.77 13.78 16 36 H 0.08 2.71 8.07 -2.39 -0.02 2.70 16 37 H 0.04 1.86 8.04 -2.39 -0.02 1.84 16 38 H 0.07 1.91 7.66 -2.38 -0.02 1.90 16 39 H 0.08 2.01 7.66 -2.39 -0.02 1.99 16 40 H 0.15 2.76 6.30 -2.91 -0.02 2.74 16 41 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 42 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 43 H 0.14 2.81 7.88 -2.90 -0.02 2.78 16 Total: -1.00 -83.17 369.38 3.55 -79.61 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -2.12 Total: 12.43 kcal Atomic # 6 Polarization: 25.07 SS G_CDS: 6.17 Total: 31.24 kcal Atomic # 7 Polarization: -113.40 SS G_CDS: -1.60 Total: -115.00 kcal Atomic # 8 Polarization: -58.03 SS G_CDS: -0.92 Total: -58.95 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 2.03 Total: 50.67 kcal Total: -83.17 3.55 -79.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821662792.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.364 kcal (2) G-P(sol) polarization free energy of solvation -83.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds