Wall clock time and date at job start Wed Apr 1 2020 04:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34236 * 116.99891 * 2 1 4 4 O 1.20822 * 119.99667 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99934 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.47204 * 180.02562 * 5 3 2 7 7 C 1.36931 * 119.99988 * 270.00452 * 6 5 3 8 8 H 1.08003 * 120.00016 * 21.80623 * 7 6 5 9 9 C 1.38813 * 120.00061 * 201.81003 * 7 6 5 10 10 N 1.31617 * 120.00323 * 309.77255 * 9 7 6 11 11 Si 1.86805 * 119.99986 * 129.76992 * 9 7 6 12 12 H 1.48508 * 109.46912 * 90.00307 * 11 9 7 13 13 H 1.48499 * 109.47091 * 210.00106 * 11 9 7 14 14 H 1.48499 * 109.47305 * 330.00197 * 11 9 7 15 15 C 1.46495 * 119.99882 * 89.99886 * 6 5 3 16 16 C 1.50699 * 109.47306 * 276.84035 * 15 6 5 17 17 C 1.37934 * 119.97182 * 264.55705 * 16 15 6 18 18 C 1.39324 * 119.93728 * 179.97438 * 17 16 15 19 19 C 1.48427 * 120.05963 * 179.97438 * 18 17 16 20 20 N 1.34062 * 126.67939 * 359.68956 * 19 18 17 21 21 N 1.28978 * 107.27070 * 179.83363 * 20 19 18 22 22 N 1.28734 * 108.94483 * 0.43841 * 21 20 19 23 23 H 0.97009 * 125.33854 * 179.74730 * 22 21 20 24 24 N 1.28868 * 109.32083 * 359.72018 * 22 21 20 25 25 C 1.39366 * 119.87879 * 0.02562 * 18 17 16 26 26 C 1.37897 * 119.93656 * 359.76206 * 25 18 17 27 27 C 1.38811 * 119.96668 * 84.58621 * 16 15 6 28 28 O 1.35870 * 119.93702 * 359.96984 * 27 16 15 29 29 C 1.42898 * 116.99972 * 180.02562 * 28 27 16 30 30 H 1.09000 * 109.47135 * 59.99803 * 1 2 3 31 31 H 1.08998 * 109.47173 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47177 * 299.99542 * 1 2 3 33 33 H 1.09001 * 109.47157 * 60.00350 * 5 3 2 34 34 H 1.09002 * 109.47249 * 300.00465 * 5 3 2 35 35 H 0.96996 * 120.00448 * 179.97438 * 10 9 7 36 36 H 1.09006 * 109.46976 * 156.84139 * 15 6 5 37 37 H 1.08998 * 109.47191 * 36.84373 * 15 6 5 38 38 H 1.07996 * 120.03252 * 0.02562 * 17 16 15 39 39 H 1.07998 * 120.03212 * 179.97438 * 25 18 17 40 40 H 1.07999 * 119.97008 * 180.25924 * 26 25 18 41 41 H 1.09007 * 109.47532 * 300.00760 * 29 28 27 42 42 H 1.09000 * 109.46946 * 60.00154 * 29 28 27 43 43 H 1.08998 * 109.47665 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6798 0.0011 7 6 4.1762 3.3367 -1.1845 8 1 3.7066 2.9732 -2.0867 9 6 4.9769 4.4698 -1.2270 10 7 4.7798 5.4476 -0.3684 11 14 6.3345 4.6067 -2.5029 12 1 5.7965 5.2442 -3.7316 13 1 7.4420 5.4340 -1.9605 14 1 6.8441 3.2511 -2.8311 15 6 4.1889 3.3819 1.2700 16 6 2.8655 3.8821 1.7893 17 6 2.4670 5.1763 1.5269 18 6 1.2432 5.6378 2.0069 19 6 0.8119 7.0301 1.7266 20 7 1.4922 7.9552 1.0348 21 7 0.7732 9.0259 1.0175 22 7 -0.3137 8.8100 1.6727 23 1 -1.0229 9.4571 1.8118 24 7 -0.3120 7.5994 2.1143 25 6 0.4252 4.7901 2.7516 26 6 0.8267 3.4959 3.0072 27 6 2.0491 3.0401 2.5318 28 8 2.4441 1.7658 2.7888 29 6 1.5551 0.9537 3.5582 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.9564 0.7807 -0.8892 34 1 3.9557 0.7809 0.8908 35 1 5.3396 6.2392 -0.3978 36 1 4.8601 4.2263 1.1127 37 1 4.6291 2.6982 1.9959 38 1 3.1026 5.8309 0.9492 39 1 -0.5238 5.1454 3.1252 40 1 0.1913 2.8372 3.5806 41 1 1.3954 1.4132 4.5337 42 1 0.6014 0.8653 3.0378 43 1 1.9903 -0.0369 3.6905 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826138206.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:53 Heat of formation + Delta-G solvation = 79.492204 kcal Electronic energy + Delta-G solvation = -32179.024120 eV Core-core repulsion = 27844.250943 eV Total energy + Delta-G solvation = -4334.773177 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.99587 -39.82787 -39.17896 -37.02849 -36.05720 -35.00004 -33.87804 -32.88270 -31.69980 -30.92655 -29.35457 -28.17733 -27.05957 -26.15398 -25.60583 -24.17651 -23.55709 -22.30923 -21.13916 -20.34018 -19.65948 -18.77362 -17.55722 -16.83790 -16.70533 -16.68390 -15.92809 -15.76649 -15.55014 -15.37234 -15.04787 -14.58806 -13.94395 -13.68997 -13.56854 -13.34441 -13.05131 -12.94731 -12.52395 -12.45590 -12.22903 -12.02634 -11.74454 -11.70043 -11.45865 -11.15589 -11.11353 -10.94616 -10.87866 -10.80869 -10.73964 -10.42129 -10.24769 -10.10768 -10.05239 -9.90903 -9.68760 -9.49288 -8.11788 -7.94018 -7.37901 -7.12132 -6.18931 -3.07260 1.30129 1.74947 2.20238 2.59334 2.96911 3.30456 3.40090 3.49229 3.54628 3.65465 3.77048 4.25372 4.44990 4.61741 4.71449 4.98062 5.23695 5.33908 5.45276 5.46627 5.52121 5.54240 5.58155 5.64989 5.71978 5.80121 5.91003 6.02120 6.04047 6.20857 6.25887 6.39734 6.54734 6.67792 6.71128 6.79011 6.98742 7.11283 7.24114 7.40871 7.59288 7.76427 7.92464 8.00856 8.21640 8.60490 8.80791 9.03750 9.70082 10.21382 10.89954 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.007821 B = 0.005927 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3579.155326 B = 4723.152868 C = 7182.834283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.380 6.380 3 C 0.414 3.586 4 O -0.485 6.485 5 C 0.166 3.834 6 N -0.547 5.547 7 C -0.295 4.295 8 H 0.080 0.920 9 C 0.051 3.949 10 N -0.836 5.836 11 Si 0.853 3.147 12 H -0.289 1.289 13 H -0.287 1.287 14 H -0.278 1.278 15 C 0.164 3.836 16 C -0.093 4.093 17 C -0.004 4.004 18 C -0.081 4.081 19 C 0.246 3.754 20 N -0.254 5.254 21 N -0.062 5.062 22 N -0.242 5.242 23 H 0.468 0.532 24 N -0.316 5.316 25 C -0.059 4.059 26 C -0.224 4.224 27 C 0.151 3.849 28 O -0.311 6.311 29 C 0.031 3.969 30 H 0.051 0.949 31 H 0.085 0.915 32 H 0.049 0.951 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.265 0.735 36 H 0.125 0.875 37 H 0.034 0.966 38 H 0.179 0.821 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.049 0.951 42 H 0.045 0.955 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.593 -4.007 8.673 12.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.297 6.297 3 C 0.252 3.748 4 O -0.369 6.369 5 C 0.034 3.966 6 N -0.264 5.264 7 C -0.421 4.421 8 H 0.098 0.902 9 C -0.152 4.152 10 N -0.474 5.474 11 Si 0.679 3.321 12 H -0.216 1.216 13 H -0.213 1.213 14 H -0.203 1.203 15 C 0.039 3.961 16 C -0.097 4.097 17 C -0.025 4.025 18 C -0.085 4.085 19 C -0.033 4.033 20 N -0.128 5.128 21 N -0.057 5.057 22 N -0.087 5.087 23 H 0.321 0.679 24 N -0.168 5.168 25 C -0.080 4.080 26 C -0.243 4.243 27 C 0.105 3.895 28 O -0.224 6.224 29 C -0.065 4.065 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.067 0.933 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.075 0.925 36 H 0.142 0.858 37 H 0.052 0.948 38 H 0.196 0.804 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.469 -2.972 8.387 12.284 hybrid contribution -1.130 0.232 -0.298 1.192 sum -9.599 -2.740 8.088 12.848 Atomic orbital electron populations 1.22954 0.79626 1.01774 1.01453 1.86637 1.21178 1.36578 1.85354 1.27127 0.94876 0.80710 0.72043 1.90651 1.66630 1.36071 1.43529 1.20571 0.84860 0.88485 1.02692 1.44607 1.73713 1.05126 1.02920 1.18937 1.25403 1.12083 0.85668 0.90246 1.24835 0.99175 0.94546 0.96659 1.70110 1.34659 1.03638 1.38951 0.87049 0.84882 0.77779 0.82428 1.21575 1.21327 1.20345 1.20977 0.91772 0.97747 0.85576 1.20234 1.00525 0.92058 0.96839 1.21776 0.93002 0.95571 0.92133 1.17268 0.97983 0.86638 1.06629 1.23837 0.87170 0.96936 0.95321 1.76255 1.23051 0.95979 1.17473 1.78889 0.93661 1.20923 1.12273 1.47647 1.17163 1.09625 1.34215 0.67892 1.74876 1.23600 0.94530 1.23803 1.20573 0.98103 0.92600 0.96692 1.20773 0.97567 0.97325 1.08614 1.19146 0.92753 0.83403 0.94214 1.86073 1.45514 1.21585 1.69266 1.22922 0.94242 0.94754 0.94536 0.92986 0.89669 0.93270 0.89239 0.89591 0.92492 0.85781 0.94805 0.80449 0.86486 0.86624 0.93246 0.93593 0.88803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.56 101.05 1.07 1.59 16 2 O -0.38 -6.58 10.57 -39.27 -0.41 -6.99 16 3 C 0.41 8.38 6.19 36.00 0.22 8.60 16 4 O -0.48 -11.42 13.31 -18.76 -0.25 -11.67 16 5 C 0.17 3.28 5.75 -5.20 -0.03 3.25 16 6 N -0.55 -12.75 2.12 -175.99 -0.37 -13.12 16 7 C -0.30 -7.64 9.49 -15.06 -0.14 -7.78 16 8 H 0.08 2.14 8.06 -52.48 -0.42 1.72 16 9 C 0.05 1.30 4.86 -17.43 -0.08 1.21 16 10 N -0.84 -21.53 8.60 55.49 0.48 -21.05 16 11 Si 0.85 19.89 29.69 -169.99 -5.05 14.84 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 C 0.16 3.70 5.09 -5.20 -0.03 3.68 16 16 C -0.09 -2.05 4.33 -104.52 -0.45 -2.51 16 17 C 0.00 -0.10 9.19 -39.29 -0.36 -0.46 16 18 C -0.08 -1.68 5.88 -104.88 -0.62 -2.30 16 19 C 0.25 4.85 7.93 -156.30 -1.24 3.61 16 20 N -0.25 -5.21 12.23 32.15 0.39 -4.81 16 21 N -0.06 -1.04 13.47 60.35 0.81 -0.23 16 22 N -0.24 -3.23 7.90 60.35 0.48 -2.75 16 23 H 0.47 3.55 8.96 -340.36 -3.05 0.50 16 24 N -0.32 -5.19 12.08 32.17 0.39 -4.80 16 25 C -0.06 -1.08 9.69 -39.29 -0.38 -1.46 16 26 C -0.22 -3.98 9.02 -39.48 -0.36 -4.34 16 27 C 0.15 2.95 4.58 -39.14 -0.18 2.77 16 28 O -0.31 -5.39 7.37 -19.33 -0.14 -5.54 16 29 C 0.03 0.39 9.81 101.05 0.99 1.38 16 30 H 0.05 0.78 8.13 -51.93 -0.42 0.35 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.70 8.06 -51.93 -0.42 0.28 16 33 H 0.09 1.66 8.04 -51.93 -0.42 1.24 16 34 H 0.09 1.52 7.65 -51.93 -0.40 1.12 16 35 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 36 H 0.12 3.05 4.87 -51.93 -0.25 2.80 16 37 H 0.03 0.71 7.55 -51.93 -0.39 0.31 16 38 H 0.18 4.45 5.47 -52.49 -0.29 4.16 16 39 H 0.12 1.89 7.88 -52.49 -0.41 1.48 16 40 H 0.12 1.71 6.28 -52.49 -0.33 1.38 16 41 H 0.05 0.55 7.67 -51.93 -0.40 0.15 16 42 H 0.05 0.58 7.57 -51.93 -0.39 0.19 16 43 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 361.80 15.07 5.45 5.45 Total: -1.00 -32.02 361.80 -7.39 -39.41 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -7.58 Total: 4.00 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: -1.59 Total: 7.25 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: 2.18 Total: -46.76 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.81 Total: -24.20 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.05 Total: 14.84 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.02 -7.39 -39.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826138206.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.905 kcal (2) G-P(sol) polarization free energy of solvation -32.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds