Wall clock time and date at job start Wed Apr 1 2020 04:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34236 * 116.99891 * 2 1 4 4 O 1.20822 * 119.99667 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99934 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.47204 * 180.02562 * 5 3 2 7 7 C 1.36931 * 119.99988 * 270.00452 * 6 5 3 8 8 H 1.08003 * 120.00016 * 21.80623 * 7 6 5 9 9 C 1.38813 * 120.00061 * 201.81003 * 7 6 5 10 10 N 1.31617 * 120.00323 * 309.77255 * 9 7 6 11 11 Si 1.86805 * 119.99986 * 129.76992 * 9 7 6 12 12 H 1.48508 * 109.46912 * 90.00307 * 11 9 7 13 13 H 1.48499 * 109.47091 * 210.00106 * 11 9 7 14 14 H 1.48499 * 109.47305 * 330.00197 * 11 9 7 15 15 C 1.46495 * 119.99882 * 89.99886 * 6 5 3 16 16 C 1.50699 * 109.47306 * 276.84035 * 15 6 5 17 17 C 1.37934 * 119.97182 * 264.55705 * 16 15 6 18 18 C 1.39324 * 119.93728 * 179.97438 * 17 16 15 19 19 C 1.48427 * 120.05963 * 179.97438 * 18 17 16 20 20 N 1.34062 * 126.67939 * 359.68956 * 19 18 17 21 21 N 1.28978 * 107.27070 * 179.83363 * 20 19 18 22 22 N 1.28734 * 108.94483 * 0.43841 * 21 20 19 23 23 H 0.97009 * 125.33854 * 179.74730 * 22 21 20 24 24 N 1.28868 * 109.32083 * 359.72018 * 22 21 20 25 25 C 1.39366 * 119.87879 * 0.02562 * 18 17 16 26 26 C 1.37897 * 119.93656 * 359.76206 * 25 18 17 27 27 C 1.38811 * 119.96668 * 84.58621 * 16 15 6 28 28 O 1.35870 * 119.93702 * 359.96984 * 27 16 15 29 29 C 1.42898 * 116.99972 * 180.02562 * 28 27 16 30 30 H 1.09000 * 109.47135 * 59.99803 * 1 2 3 31 31 H 1.08998 * 109.47173 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47177 * 299.99542 * 1 2 3 33 33 H 1.09001 * 109.47157 * 60.00350 * 5 3 2 34 34 H 1.09002 * 109.47249 * 300.00465 * 5 3 2 35 35 H 0.96996 * 120.00448 * 179.97438 * 10 9 7 36 36 H 1.09006 * 109.46976 * 156.84139 * 15 6 5 37 37 H 1.08998 * 109.47191 * 36.84373 * 15 6 5 38 38 H 1.07996 * 120.03252 * 0.02562 * 17 16 15 39 39 H 1.07998 * 120.03212 * 179.97438 * 25 18 17 40 40 H 1.07999 * 119.97008 * 180.25924 * 26 25 18 41 41 H 1.09007 * 109.47532 * 300.00760 * 29 28 27 42 42 H 1.09000 * 109.46946 * 60.00154 * 29 28 27 43 43 H 1.08998 * 109.47665 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6798 0.0011 7 6 4.1762 3.3367 -1.1845 8 1 3.7066 2.9732 -2.0867 9 6 4.9769 4.4698 -1.2270 10 7 4.7798 5.4476 -0.3684 11 14 6.3345 4.6067 -2.5029 12 1 5.7965 5.2442 -3.7316 13 1 7.4420 5.4340 -1.9605 14 1 6.8441 3.2511 -2.8311 15 6 4.1889 3.3819 1.2700 16 6 2.8655 3.8821 1.7893 17 6 2.4670 5.1763 1.5269 18 6 1.2432 5.6378 2.0069 19 6 0.8119 7.0301 1.7266 20 7 1.4922 7.9552 1.0348 21 7 0.7732 9.0259 1.0175 22 7 -0.3137 8.8100 1.6727 23 1 -1.0229 9.4571 1.8118 24 7 -0.3120 7.5994 2.1143 25 6 0.4252 4.7901 2.7516 26 6 0.8267 3.4959 3.0072 27 6 2.0491 3.0401 2.5318 28 8 2.4441 1.7658 2.7888 29 6 1.5551 0.9537 3.5582 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.9564 0.7807 -0.8892 34 1 3.9557 0.7809 0.8908 35 1 5.3396 6.2392 -0.3978 36 1 4.8601 4.2263 1.1127 37 1 4.6291 2.6982 1.9959 38 1 3.1026 5.8309 0.9492 39 1 -0.5238 5.1454 3.1252 40 1 0.1913 2.8372 3.5806 41 1 1.3954 1.4132 4.5337 42 1 0.6014 0.8653 3.0378 43 1 1.9903 -0.0369 3.6905 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826138206.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:52 Heat of formation + Delta-G solvation = 58.880060 kcal Electronic energy + Delta-G solvation = -32179.917930 eV Core-core repulsion = 27844.250943 eV Total energy + Delta-G solvation = -4335.666987 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -45.34409 -41.29164 -40.64295 -38.42122 -37.63305 -36.63733 -35.24773 -34.28168 -33.55338 -32.44409 -30.76880 -29.63479 -28.18768 -27.57260 -27.32495 -25.54656 -24.94992 -23.99651 -22.57429 -21.81353 -21.26087 -20.07924 -19.06687 -18.46051 -18.19946 -18.03946 -17.39550 -17.24847 -16.98305 -16.75819 -16.38849 -16.28132 -15.45013 -15.39755 -15.09987 -14.79359 -14.47250 -14.36218 -14.05681 -13.84214 -13.65850 -13.55871 -13.36545 -13.07428 -12.76476 -12.67800 -12.54116 -12.52628 -12.40381 -12.23017 -12.14997 -12.12037 -11.87222 -11.85060 -11.50716 -11.42021 -11.24967 -11.09496 -10.00059 -9.52950 -9.01209 -8.71610 -8.10129 -5.00191 -0.07082 0.32954 0.70090 1.48699 1.50200 1.53028 1.61782 1.70188 1.74191 2.15062 2.53692 2.59447 2.85610 3.00695 3.08832 3.32441 3.86685 4.04163 4.13652 4.31481 4.33943 4.40216 4.41467 4.43916 4.48124 4.52009 4.60378 4.67532 4.73177 4.74243 4.81211 4.86632 4.99251 5.10405 5.34103 5.46728 5.61031 5.69498 5.73321 5.75116 5.84737 5.98795 6.11444 6.42397 6.64697 7.11670 7.23848 7.29186 7.86307 8.35461 8.96263 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.007821 B = 0.005927 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3579.155326 B = 4723.152868 C = 7182.834283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.374 6.374 3 C 0.423 3.577 4 O -0.521 6.521 5 C 0.161 3.839 6 N -0.560 5.560 7 C -0.307 4.307 8 H 0.061 0.939 9 C 0.017 3.983 10 N -0.847 5.847 11 Si 0.906 3.094 12 H -0.300 1.300 13 H -0.289 1.289 14 H -0.274 1.274 15 C 0.170 3.830 16 C -0.114 4.114 17 C -0.032 4.032 18 C -0.096 4.096 19 C 0.227 3.773 20 N -0.300 5.300 21 N -0.064 5.064 22 N -0.203 5.203 23 H 0.493 0.507 24 N -0.301 5.301 25 C -0.053 4.053 26 C -0.220 4.220 27 C 0.157 3.843 28 O -0.324 6.324 29 C 0.021 3.979 30 H 0.040 0.960 31 H 0.129 0.871 32 H 0.050 0.950 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.261 0.739 36 H 0.098 0.902 37 H 0.045 0.955 38 H 0.148 0.852 39 H 0.143 0.857 40 H 0.152 0.848 41 H 0.068 0.932 42 H 0.048 0.952 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.628 -5.728 10.200 15.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.291 6.291 3 C 0.263 3.737 4 O -0.408 6.408 5 C 0.031 3.969 6 N -0.278 5.278 7 C -0.433 4.433 8 H 0.079 0.921 9 C -0.185 4.185 10 N -0.485 5.485 11 Si 0.733 3.267 12 H -0.227 1.227 13 H -0.215 1.215 14 H -0.200 1.200 15 C 0.046 3.954 16 C -0.117 4.117 17 C -0.053 4.053 18 C -0.100 4.100 19 C -0.052 4.052 20 N -0.172 5.172 21 N -0.059 5.059 22 N -0.054 5.054 23 H 0.352 0.648 24 N -0.154 5.154 25 C -0.074 4.074 26 C -0.238 4.238 27 C 0.109 3.891 28 O -0.237 6.237 29 C -0.074 4.074 30 H 0.059 0.941 31 H 0.147 0.853 32 H 0.069 0.931 33 H 0.117 0.883 34 H 0.127 0.873 35 H 0.071 0.929 36 H 0.115 0.885 37 H 0.063 0.937 38 H 0.165 0.835 39 H 0.160 0.840 40 H 0.169 0.831 41 H 0.087 0.913 42 H 0.067 0.933 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.514 -4.718 9.918 15.204 hybrid contribution -0.690 0.699 -0.700 1.206 sum -11.204 -4.019 9.218 15.055 Atomic orbital electron populations 1.23255 0.77350 1.04482 1.00989 1.86581 1.23192 1.34626 1.84705 1.26796 0.94907 0.80841 0.71112 1.90648 1.67387 1.37419 1.45342 1.20735 0.84924 0.87011 1.04238 1.44555 1.74895 1.06151 1.02216 1.18866 1.26039 1.12185 0.86243 0.92126 1.25271 1.00270 0.94585 0.98390 1.70266 1.34611 1.03542 1.40125 0.86265 0.82828 0.77424 0.80200 1.22720 1.21489 1.19988 1.20706 0.92160 0.97003 0.85580 1.20120 1.00691 0.92487 0.98412 1.21564 0.94110 0.96018 0.93566 1.17398 0.97755 0.87674 1.07195 1.23804 0.88108 0.96984 0.96319 1.76246 1.24745 0.97067 1.19139 1.78808 0.94307 1.20026 1.12753 1.47704 1.16771 1.09220 1.31671 0.64838 1.74810 1.22178 0.95168 1.23255 1.20865 0.98460 0.92519 0.95525 1.21144 0.97200 0.97510 1.07975 1.19070 0.92671 0.84021 0.93300 1.86046 1.46984 1.20769 1.69875 1.23286 0.93969 0.95345 0.94778 0.94150 0.85329 0.93128 0.88276 0.87265 0.92935 0.88463 0.93687 0.83474 0.83957 0.83070 0.91330 0.93326 0.86152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 10.56 113.37 1.20 2.05 16 2 O -0.37 -12.06 10.57 -51.48 -0.54 -12.61 16 3 C 0.42 16.68 6.19 71.24 0.44 17.12 16 4 O -0.52 -24.44 13.31 21.99 0.29 -24.14 16 5 C 0.16 6.30 5.75 85.63 0.49 6.79 16 6 N -0.56 -26.64 2.12 -710.70 -1.50 -28.14 16 7 C -0.31 -16.42 9.49 84.03 0.80 -15.62 16 8 H 0.06 3.41 8.06 -2.91 -0.02 3.38 16 9 C 0.02 0.89 4.86 84.86 0.41 1.30 16 10 N -0.85 -46.00 8.60 21.65 0.19 -45.81 16 11 Si 0.91 42.48 29.69 68.60 2.04 44.51 16 12 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 13 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 14 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 15 C 0.17 7.92 5.09 85.63 0.44 8.36 16 16 C -0.11 -5.12 4.33 -19.80 -0.09 -5.21 16 17 C -0.03 -1.51 9.19 22.46 0.21 -1.30 16 18 C -0.10 -4.04 5.88 -20.03 -0.12 -4.16 16 19 C 0.23 9.00 7.93 137.36 1.09 10.09 16 20 N -0.30 -12.61 12.23 -52.19 -0.64 -13.25 16 21 N -0.06 -2.13 13.47 37.02 0.50 -1.63 16 22 N -0.20 -5.07 7.90 37.02 0.29 -4.78 16 23 H 0.49 6.21 8.96 -347.52 -3.12 3.10 16 24 N -0.30 -9.44 12.08 -52.14 -0.63 -10.07 16 25 C -0.05 -1.87 9.69 22.46 0.22 -1.65 16 26 C -0.22 -7.31 9.02 22.34 0.20 -7.11 16 27 C 0.16 5.93 4.58 22.55 0.10 6.03 16 28 O -0.32 -10.50 7.37 -92.09 -0.68 -11.18 16 29 C 0.02 0.44 9.81 113.37 1.11 1.55 16 30 H 0.04 1.13 8.13 -2.39 -0.02 1.11 16 31 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.05 1.29 8.06 -2.39 -0.02 1.27 16 33 H 0.10 3.62 8.04 -2.39 -0.02 3.60 16 34 H 0.11 3.70 7.65 -2.39 -0.02 3.68 16 35 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 36 H 0.10 5.05 4.87 -2.38 -0.01 5.04 16 37 H 0.04 1.91 7.55 -2.39 -0.02 1.89 16 38 H 0.15 7.90 5.47 -2.91 -0.02 7.89 16 39 H 0.14 4.19 7.88 -2.91 -0.02 4.16 16 40 H 0.15 3.85 6.28 -2.91 -0.02 3.83 16 41 H 0.07 1.23 7.67 -2.38 -0.02 1.21 16 42 H 0.05 1.03 7.57 -2.39 -0.02 1.01 16 43 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -72.79 361.80 3.79 -69.00 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: -2.03 Total: 19.85 kcal Atomic # 6 Polarization: 11.74 SS G_CDS: 6.50 Total: 18.24 kcal Atomic # 7 Polarization: -101.89 SS G_CDS: -1.79 Total: -103.69 kcal Atomic # 8 Polarization: -46.99 SS G_CDS: -0.93 Total: -47.92 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.04 Total: 44.51 kcal Total: -72.79 3.79 -69.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826138206.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.878 kcal (2) G-P(sol) polarization free energy of solvation -72.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds