Wall clock time and date at job start Wed Apr 1 2020 04:08:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45200 * 1
3 3 C 1.34236 * 116.99891 * 2 1
4 4 O 1.20822 * 119.99667 * 0.02562 * 3 2 1
5 5 C 1.50697 * 119.99934 * 179.97438 * 3 2 1
6 6 N 1.46499 * 109.47204 * 180.02562 * 5 3 2
7 7 C 1.36931 * 119.99988 * 270.00452 * 6 5 3
8 8 H 1.08003 * 120.00016 * 21.80623 * 7 6 5
9 9 C 1.38813 * 120.00061 * 201.81003 * 7 6 5
10 10 N 1.31617 * 120.00323 * 309.77255 * 9 7 6
11 11 Si 1.86805 * 119.99986 * 129.76992 * 9 7 6
12 12 H 1.48508 * 109.46912 * 90.00307 * 11 9 7
13 13 H 1.48499 * 109.47091 * 210.00106 * 11 9 7
14 14 H 1.48499 * 109.47305 * 330.00197 * 11 9 7
15 15 C 1.46495 * 119.99882 * 89.99886 * 6 5 3
16 16 C 1.50699 * 109.47306 * 276.84035 * 15 6 5
17 17 C 1.37934 * 119.97182 * 264.55705 * 16 15 6
18 18 C 1.39324 * 119.93728 * 179.97438 * 17 16 15
19 19 C 1.48427 * 120.05963 * 179.97438 * 18 17 16
20 20 N 1.34062 * 126.67939 * 359.68956 * 19 18 17
21 21 N 1.28978 * 107.27070 * 179.83363 * 20 19 18
22 22 N 1.28734 * 108.94483 * 0.43841 * 21 20 19
23 23 H 0.97009 * 125.33854 * 179.74730 * 22 21 20
24 24 N 1.28868 * 109.32083 * 359.72018 * 22 21 20
25 25 C 1.39366 * 119.87879 * 0.02562 * 18 17 16
26 26 C 1.37897 * 119.93656 * 359.76206 * 25 18 17
27 27 C 1.38811 * 119.96668 * 84.58621 * 16 15 6
28 28 O 1.35870 * 119.93702 * 359.96984 * 27 16 15
29 29 C 1.42898 * 116.99972 * 180.02562 * 28 27 16
30 30 H 1.09000 * 109.47135 * 59.99803 * 1 2 3
31 31 H 1.08998 * 109.47173 * 179.97438 * 1 2 3
32 32 H 1.08998 * 109.47177 * 299.99542 * 1 2 3
33 33 H 1.09001 * 109.47157 * 60.00350 * 5 3 2
34 34 H 1.09002 * 109.47249 * 300.00465 * 5 3 2
35 35 H 0.96996 * 120.00448 * 179.97438 * 10 9 7
36 36 H 1.09006 * 109.46976 * 156.84139 * 15 6 5
37 37 H 1.08998 * 109.47191 * 36.84373 * 15 6 5
38 38 H 1.07996 * 120.03252 * 0.02562 * 17 16 15
39 39 H 1.07998 * 120.03212 * 179.97438 * 25 18 17
40 40 H 1.07999 * 119.97008 * 180.25924 * 26 25 18
41 41 H 1.09007 * 109.47532 * 300.00760 * 29 28 27
42 42 H 1.09000 * 109.46946 * 60.00154 * 29 28 27
43 43 H 1.08998 * 109.47665 * 180.02562 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1961 0.0000
4 8 1.4033 2.2093 0.0005
5 6 3.5663 1.2749 0.0006
6 7 3.9817 2.6798 0.0011
7 6 4.1762 3.3367 -1.1845
8 1 3.7066 2.9732 -2.0867
9 6 4.9769 4.4698 -1.2270
10 7 4.7798 5.4476 -0.3684
11 14 6.3345 4.6067 -2.5029
12 1 5.7965 5.2442 -3.7316
13 1 7.4420 5.4340 -1.9605
14 1 6.8441 3.2511 -2.8311
15 6 4.1889 3.3819 1.2700
16 6 2.8655 3.8821 1.7893
17 6 2.4670 5.1763 1.5269
18 6 1.2432 5.6378 2.0069
19 6 0.8119 7.0301 1.7266
20 7 1.4922 7.9552 1.0348
21 7 0.7732 9.0259 1.0175
22 7 -0.3137 8.8100 1.6727
23 1 -1.0229 9.4571 1.8118
24 7 -0.3120 7.5994 2.1143
25 6 0.4252 4.7901 2.7516
26 6 0.8267 3.4959 3.0072
27 6 2.0491 3.0401 2.5318
28 8 2.4441 1.7658 2.7888
29 6 1.5551 0.9537 3.5582
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3633 -1.0276 -0.0005
32 1 -0.3633 0.5138 0.8900
33 1 3.9564 0.7807 -0.8892
34 1 3.9557 0.7809 0.8908
35 1 5.3396 6.2392 -0.3978
36 1 4.8601 4.2263 1.1127
37 1 4.6291 2.6982 1.9959
38 1 3.1026 5.8309 0.9492
39 1 -0.5238 5.1454 3.1252
40 1 0.1913 2.8372 3.5806
41 1 1.3954 1.4132 4.5337
42 1 0.6014 0.8653 3.0378
43 1 1.9903 -0.0369 3.6905
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000826138206.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:08:52
Heat of formation + Delta-G solvation = 58.880060 kcal
Electronic energy + Delta-G solvation = -32179.917930 eV
Core-core repulsion = 27844.250943 eV
Total energy + Delta-G solvation = -4335.666987 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.143 amu
Computer time = 1.29 seconds
Orbital eigenvalues (eV)
-45.34409 -41.29164 -40.64295 -38.42122 -37.63305 -36.63733 -35.24773 -34.28168
-33.55338 -32.44409 -30.76880 -29.63479 -28.18768 -27.57260 -27.32495 -25.54656
-24.94992 -23.99651 -22.57429 -21.81353 -21.26087 -20.07924 -19.06687 -18.46051
-18.19946 -18.03946 -17.39550 -17.24847 -16.98305 -16.75819 -16.38849 -16.28132
-15.45013 -15.39755 -15.09987 -14.79359 -14.47250 -14.36218 -14.05681 -13.84214
-13.65850 -13.55871 -13.36545 -13.07428 -12.76476 -12.67800 -12.54116 -12.52628
-12.40381 -12.23017 -12.14997 -12.12037 -11.87222 -11.85060 -11.50716 -11.42021
-11.24967 -11.09496 -10.00059 -9.52950 -9.01209 -8.71610 -8.10129 -5.00191
-0.07082 0.32954 0.70090 1.48699 1.50200 1.53028 1.61782 1.70188
1.74191 2.15062 2.53692 2.59447 2.85610 3.00695 3.08832 3.32441
3.86685 4.04163 4.13652 4.31481 4.33943 4.40216 4.41467 4.43916
4.48124 4.52009 4.60378 4.67532 4.73177 4.74243 4.81211 4.86632
4.99251 5.10405 5.34103 5.46728 5.61031 5.69498 5.73321 5.75116
5.84737 5.98795 6.11444 6.42397 6.64697 7.11670 7.23848 7.29186
7.86307 8.35461 8.96263
Molecular weight = 347.14amu
Principal moments of inertia in cm(-1)
A = 0.007821 B = 0.005927 C = 0.003897
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3579.155326 B = 4723.152868 C = 7182.834283
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.033 3.967
2 O -0.374 6.374
3 C 0.423 3.577
4 O -0.521 6.521
5 C 0.161 3.839
6 N -0.560 5.560
7 C -0.307 4.307
8 H 0.061 0.939
9 C 0.017 3.983
10 N -0.847 5.847
11 Si 0.906 3.094
12 H -0.300 1.300
13 H -0.289 1.289
14 H -0.274 1.274
15 C 0.170 3.830
16 C -0.114 4.114
17 C -0.032 4.032
18 C -0.096 4.096
19 C 0.227 3.773
20 N -0.300 5.300
21 N -0.064 5.064
22 N -0.203 5.203
23 H 0.493 0.507
24 N -0.301 5.301
25 C -0.053 4.053
26 C -0.220 4.220
27 C 0.157 3.843
28 O -0.324 6.324
29 C 0.021 3.979
30 H 0.040 0.960
31 H 0.129 0.871
32 H 0.050 0.950
33 H 0.099 0.901
34 H 0.110 0.890
35 H 0.261 0.739
36 H 0.098 0.902
37 H 0.045 0.955
38 H 0.148 0.852
39 H 0.143 0.857
40 H 0.152 0.848
41 H 0.068 0.932
42 H 0.048 0.952
43 H 0.120 0.880
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.628 -5.728 10.200 15.805
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.061 4.061
2 O -0.291 6.291
3 C 0.263 3.737
4 O -0.408 6.408
5 C 0.031 3.969
6 N -0.278 5.278
7 C -0.433 4.433
8 H 0.079 0.921
9 C -0.185 4.185
10 N -0.485 5.485
11 Si 0.733 3.267
12 H -0.227 1.227
13 H -0.215 1.215
14 H -0.200 1.200
15 C 0.046 3.954
16 C -0.117 4.117
17 C -0.053 4.053
18 C -0.100 4.100
19 C -0.052 4.052
20 N -0.172 5.172
21 N -0.059 5.059
22 N -0.054 5.054
23 H 0.352 0.648
24 N -0.154 5.154
25 C -0.074 4.074
26 C -0.238 4.238
27 C 0.109 3.891
28 O -0.237 6.237
29 C -0.074 4.074
30 H 0.059 0.941
31 H 0.147 0.853
32 H 0.069 0.931
33 H 0.117 0.883
34 H 0.127 0.873
35 H 0.071 0.929
36 H 0.115 0.885
37 H 0.063 0.937
38 H 0.165 0.835
39 H 0.160 0.840
40 H 0.169 0.831
41 H 0.087 0.913
42 H 0.067 0.933
43 H 0.138 0.862
Dipole moment (debyes) X Y Z Total
from point charges -10.514 -4.718 9.918 15.204
hybrid contribution -0.690 0.699 -0.700 1.206
sum -11.204 -4.019 9.218 15.055
Atomic orbital electron populations
1.23255 0.77350 1.04482 1.00989 1.86581 1.23192 1.34626 1.84705
1.26796 0.94907 0.80841 0.71112 1.90648 1.67387 1.37419 1.45342
1.20735 0.84924 0.87011 1.04238 1.44555 1.74895 1.06151 1.02216
1.18866 1.26039 1.12185 0.86243 0.92126 1.25271 1.00270 0.94585
0.98390 1.70266 1.34611 1.03542 1.40125 0.86265 0.82828 0.77424
0.80200 1.22720 1.21489 1.19988 1.20706 0.92160 0.97003 0.85580
1.20120 1.00691 0.92487 0.98412 1.21564 0.94110 0.96018 0.93566
1.17398 0.97755 0.87674 1.07195 1.23804 0.88108 0.96984 0.96319
1.76246 1.24745 0.97067 1.19139 1.78808 0.94307 1.20026 1.12753
1.47704 1.16771 1.09220 1.31671 0.64838 1.74810 1.22178 0.95168
1.23255 1.20865 0.98460 0.92519 0.95525 1.21144 0.97200 0.97510
1.07975 1.19070 0.92671 0.84021 0.93300 1.86046 1.46984 1.20769
1.69875 1.23286 0.93969 0.95345 0.94778 0.94150 0.85329 0.93128
0.88276 0.87265 0.92935 0.88463 0.93687 0.83474 0.83957 0.83070
0.91330 0.93326 0.86152
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 24.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.85 10.56 113.37 1.20 2.05 16
2 O -0.37 -12.06 10.57 -51.48 -0.54 -12.61 16
3 C 0.42 16.68 6.19 71.24 0.44 17.12 16
4 O -0.52 -24.44 13.31 21.99 0.29 -24.14 16
5 C 0.16 6.30 5.75 85.63 0.49 6.79 16
6 N -0.56 -26.64 2.12 -710.70 -1.50 -28.14 16
7 C -0.31 -16.42 9.49 84.03 0.80 -15.62 16
8 H 0.06 3.41 8.06 -2.91 -0.02 3.38 16
9 C 0.02 0.89 4.86 84.86 0.41 1.30 16
10 N -0.85 -46.00 8.60 21.65 0.19 -45.81 16
11 Si 0.91 42.48 29.69 68.60 2.04 44.51 16
12 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16
13 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16
14 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16
15 C 0.17 7.92 5.09 85.63 0.44 8.36 16
16 C -0.11 -5.12 4.33 -19.80 -0.09 -5.21 16
17 C -0.03 -1.51 9.19 22.46 0.21 -1.30 16
18 C -0.10 -4.04 5.88 -20.03 -0.12 -4.16 16
19 C 0.23 9.00 7.93 137.36 1.09 10.09 16
20 N -0.30 -12.61 12.23 -52.19 -0.64 -13.25 16
21 N -0.06 -2.13 13.47 37.02 0.50 -1.63 16
22 N -0.20 -5.07 7.90 37.02 0.29 -4.78 16
23 H 0.49 6.21 8.96 -347.52 -3.12 3.10 16
24 N -0.30 -9.44 12.08 -52.14 -0.63 -10.07 16
25 C -0.05 -1.87 9.69 22.46 0.22 -1.65 16
26 C -0.22 -7.31 9.02 22.34 0.20 -7.11 16
27 C 0.16 5.93 4.58 22.55 0.10 6.03 16
28 O -0.32 -10.50 7.37 -92.09 -0.68 -11.18 16
29 C 0.02 0.44 9.81 113.37 1.11 1.55 16
30 H 0.04 1.13 8.13 -2.39 -0.02 1.11 16
31 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16
32 H 0.05 1.29 8.06 -2.39 -0.02 1.27 16
33 H 0.10 3.62 8.04 -2.39 -0.02 3.60 16
34 H 0.11 3.70 7.65 -2.39 -0.02 3.68 16
35 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16
36 H 0.10 5.05 4.87 -2.38 -0.01 5.04 16
37 H 0.04 1.91 7.55 -2.39 -0.02 1.89 16
38 H 0.15 7.90 5.47 -2.91 -0.02 7.89 16
39 H 0.14 4.19 7.88 -2.91 -0.02 4.16 16
40 H 0.15 3.85 6.28 -2.91 -0.02 3.83 16
41 H 0.07 1.23 7.67 -2.38 -0.02 1.21 16
42 H 0.05 1.03 7.57 -2.39 -0.02 1.01 16
43 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16
Total: -1.00 -72.79 361.80 3.79 -69.00
By element:
Atomic # 1 Polarization: 21.88 SS G_CDS: -2.03 Total: 19.85 kcal
Atomic # 6 Polarization: 11.74 SS G_CDS: 6.50 Total: 18.24 kcal
Atomic # 7 Polarization: -101.89 SS G_CDS: -1.79 Total: -103.69 kcal
Atomic # 8 Polarization: -46.99 SS G_CDS: -0.93 Total: -47.92 kcal
Atomic # 14 Polarization: 42.48 SS G_CDS: 2.04 Total: 44.51 kcal
Total: -72.79 3.79 -69.00 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000826138206.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 127.878 kcal
(2) G-P(sol) polarization free energy of solvation -72.787 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.090 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.790 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.997 kcal
(6) G-S(sol) free energy of system = (1) + (5) 58.880 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.30 seconds