Wall clock time and date at job start Wed Apr 1 2020 04:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.38340 * 120.01170 * 359.72565 * 3 2 1 5 5 C 1.39328 * 119.88102 * 179.70228 * 4 3 2 6 6 C 1.48431 * 120.04752 * 180.30319 * 5 4 3 7 7 N 1.34052 * 126.67483 * 359.97438 * 6 5 4 8 8 N 1.28990 * 107.26985 * 179.83904 * 7 6 5 9 9 N 1.28738 * 108.94147 * 0.43771 * 8 7 6 10 10 H 0.96997 * 125.33573 * 179.74044 * 9 8 7 11 11 N 1.28868 * 109.32356 * 359.72399 * 9 8 7 12 12 C 1.39325 * 119.90814 * 0.59267 * 5 4 3 13 13 C 1.38003 * 120.03242 * 359.68615 * 12 5 4 14 14 C 1.38662 * 120.12013 * 0.02562 * 13 12 5 15 15 O 1.35960 * 119.96372 * 179.97438 * 14 13 12 16 16 C 1.42907 * 116.99460 * 0.02562 * 15 14 13 17 17 C 1.50696 * 109.46810 * 179.97438 * 16 15 14 18 18 O 1.21284 * 120.00327 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99783 * 180.02562 * 17 16 15 20 20 C 1.46500 * 120.00074 * 179.97438 * 19 17 16 21 21 C 1.52996 * 109.47490 * 179.97438 * 20 19 17 22 22 C 1.50705 * 109.47570 * 179.97438 * 21 20 19 23 23 H 1.07999 * 119.99310 * 0.02562 * 22 21 20 24 24 C 1.37873 * 119.99848 * 180.02562 * 22 21 20 25 25 N 1.31509 * 120.00318 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99577 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.46992 * 359.97438 * 26 24 22 28 28 H 1.48491 * 109.47326 * 119.99760 * 26 24 22 29 29 H 1.48506 * 109.46603 * 240.00023 * 26 24 22 30 30 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 32 32 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 33 33 H 1.07998 * 120.06486 * 0.02562 * 4 3 2 34 34 H 1.08001 * 119.98663 * 179.70155 * 12 5 4 35 35 H 1.08002 * 119.94844 * 180.02562 * 13 12 5 36 36 H 1.08999 * 109.47063 * 299.99799 * 16 15 14 37 37 H 1.08996 * 109.46786 * 60.00046 * 16 15 14 38 38 H 0.96995 * 120.00479 * 359.97438 * 19 17 16 39 39 H 1.09005 * 109.47378 * 299.99877 * 20 19 17 40 40 H 1.09009 * 109.47140 * 59.99772 * 20 19 17 41 41 H 1.08998 * 109.47367 * 300.00607 * 21 20 19 42 42 H 1.09009 * 109.46831 * 59.99931 * 21 20 19 43 43 H 0.97006 * 120.00076 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2934 2.3721 -0.0057 5 6 1.9288 3.6120 0.0006 6 6 1.1243 4.8594 0.0012 7 7 -0.2132 4.9495 -0.0042 8 7 -0.5125 6.2042 0.0021 9 7 0.5750 6.8932 0.0019 10 1 0.6254 7.8619 0.0024 11 7 1.5861 6.0942 0.0013 12 6 3.3204 3.6795 0.0001 13 6 4.0681 2.5196 0.0000 14 6 3.4371 1.2849 -0.0002 15 8 4.1769 0.1442 -0.0009 16 6 5.5982 0.2928 -0.0007 17 6 6.2455 -1.0681 -0.0009 18 8 5.5575 -2.0669 -0.0006 19 7 7.5890 -1.1752 -0.0003 20 6 8.2183 -2.4981 0.0002 21 6 9.7400 -2.3391 0.0002 22 6 10.3874 -3.7000 0.0013 23 1 9.7747 -4.5894 0.0015 24 6 11.7618 -3.8096 0.0020 25 7 12.5078 -2.7265 0.0023 26 14 12.5642 -5.4965 0.0026 27 1 11.5125 -6.5449 0.0028 28 1 13.4096 -5.6430 -1.2093 29 1 13.4083 -5.6425 1.2157 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 0.2148 2.3171 -0.0098 34 1 3.8142 4.6400 0.0001 35 1 5.1468 2.5735 0.0001 36 1 5.9061 0.8421 -0.8904 37 1 5.9060 0.8411 0.8896 38 1 8.1392 -0.3765 -0.0001 39 1 7.9100 -3.0469 0.8901 40 1 7.9107 -3.0471 -0.8899 41 1 10.0480 -1.7905 -0.8898 42 1 10.0479 -1.7900 0.8901 43 1 13.4748 -2.8036 0.0025 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826175171.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:56 Heat of formation + Delta-G solvation = 39.435903 kcal Electronic energy + Delta-G solvation = -28289.040070 eV Core-core repulsion = 23952.529921 eV Total energy + Delta-G solvation = -4336.510149 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.84673 -40.92971 -39.50021 -38.32598 -37.37940 -34.91158 -34.70680 -33.65116 -32.90541 -30.84236 -30.73024 -29.90808 -28.01752 -27.55643 -25.13241 -24.80037 -24.32402 -22.56092 -21.91913 -21.05583 -20.30371 -19.66194 -18.85377 -17.67698 -17.53775 -17.16916 -16.58763 -16.50380 -16.15782 -15.78160 -15.65058 -15.31377 -14.84597 -14.56443 -14.53244 -14.45337 -14.07159 -13.37138 -13.34637 -13.07406 -12.85938 -12.81642 -12.45650 -12.32654 -11.94914 -11.77175 -11.70343 -11.62498 -11.43814 -11.36786 -11.23406 -11.06359 -10.71022 -10.64715 -10.37862 -9.83802 -9.51157 -9.22447 -9.09745 -8.61619 -8.40746 -8.09011 -6.12042 -4.14798 0.33412 0.79024 0.96389 1.82790 1.97362 2.55946 2.84172 2.99465 3.27439 3.27935 3.35243 3.37282 3.40481 3.77449 3.81462 4.39532 4.47509 4.55696 4.67328 4.77437 4.89092 4.94323 4.95574 4.97352 4.97381 5.00759 5.11298 5.25461 5.27974 5.32199 5.65107 5.80162 5.96415 6.00000 6.16484 6.27002 6.30362 6.68446 6.73738 6.82327 7.25853 7.48008 7.57323 7.73793 7.85740 7.88896 8.24110 8.52925 8.91329 9.50437 10.99529 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.023196 B = 0.001599 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.838715 B =17506.034192 C =18681.818528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.297 6.297 3 C 0.102 3.898 4 C -0.131 4.131 5 C -0.026 4.026 6 C 0.228 3.772 7 N -0.271 5.271 8 N -0.050 5.050 9 N -0.228 5.228 10 H 0.476 0.524 11 N -0.294 5.294 12 C -0.069 4.069 13 C -0.181 4.181 14 C 0.130 3.870 15 O -0.271 6.271 16 C 0.036 3.964 17 C 0.507 3.493 18 O -0.524 6.524 19 N -0.718 5.718 20 C 0.123 3.877 21 C 0.012 3.988 22 C -0.522 4.522 23 H 0.060 0.940 24 C 0.059 3.941 25 N -0.894 5.894 26 Si 0.897 3.103 27 H -0.271 1.271 28 H -0.283 1.283 29 H -0.283 1.283 30 H 0.103 0.897 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.148 0.852 34 H 0.139 0.861 35 H 0.146 0.854 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.399 0.601 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.081 21.825 -0.004 32.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.210 6.210 3 C 0.055 3.945 4 C -0.152 4.152 5 C -0.030 4.030 6 C -0.051 4.051 7 N -0.145 5.145 8 N -0.045 5.045 9 N -0.074 5.074 10 H 0.330 0.670 11 N -0.146 5.146 12 C -0.090 4.090 13 C -0.200 4.200 14 C 0.082 3.918 15 O -0.183 6.183 16 C -0.043 4.043 17 C 0.290 3.710 18 O -0.399 6.399 19 N -0.370 5.370 20 C 0.001 3.999 21 C -0.026 4.026 22 C -0.560 4.560 23 H 0.079 0.921 24 C -0.143 4.143 25 N -0.533 5.533 26 Si 0.724 3.276 27 H -0.195 1.195 28 H -0.209 1.209 29 H -0.209 1.209 30 H 0.121 0.879 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.166 0.834 34 H 0.157 0.843 35 H 0.164 0.836 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.232 0.768 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -24.953 21.064 -0.007 32.655 hybrid contribution 1.213 0.402 0.002 1.278 sum -23.740 21.467 -0.005 32.006 Atomic orbital electron populations 1.23140 0.78292 1.04365 1.01353 1.86294 1.21176 1.24866 1.88664 1.18005 0.88921 0.85354 1.02170 1.20984 1.00713 0.89758 1.03774 1.16773 0.91367 0.86750 1.08131 1.23596 0.88738 0.91744 1.01036 1.76077 1.12365 1.07981 1.18043 1.78916 1.12513 0.98399 1.14670 1.47729 1.00925 1.12660 1.46082 0.67005 1.74943 1.16050 1.01307 1.22299 1.20838 0.91573 0.98789 0.97785 1.21048 1.00969 0.90392 1.07545 1.18539 0.88514 0.86223 0.98480 1.86311 1.17088 1.27184 1.87669 1.22662 0.80018 0.97782 1.03852 1.19891 0.83170 0.89846 0.78061 1.90748 1.62634 1.38175 1.48363 1.46188 1.05126 1.11515 1.74199 1.21783 0.95890 0.81086 1.01094 1.19346 0.86950 0.98331 0.97947 1.21086 0.91497 0.92155 1.51294 0.92127 1.24990 0.97394 0.96941 0.94940 1.69959 1.05084 1.27810 1.50437 0.86453 0.79384 0.84104 0.77615 1.19546 1.20931 1.20935 0.87897 0.92512 0.92503 0.83395 0.84338 0.83597 0.88807 0.88812 0.76759 0.92306 0.92313 0.95829 0.95831 0.92886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.30 -3.70 10.27 -34.37 -0.35 -4.05 16 3 C 0.10 1.18 6.69 -39.17 -0.26 0.92 16 4 C -0.13 -1.28 8.69 -39.14 -0.34 -1.62 16 5 C -0.03 -0.25 5.88 -104.89 -0.62 -0.87 16 6 C 0.23 2.17 7.93 -156.30 -1.24 0.93 16 7 N -0.27 -2.71 12.23 32.15 0.39 -2.32 16 8 N -0.05 -0.40 13.47 60.35 0.81 0.41 16 9 N -0.23 -1.24 7.90 60.35 0.48 -0.76 16 10 H 0.48 0.26 8.96 -340.37 -3.05 -2.79 16 11 N -0.29 -2.31 12.07 32.17 0.39 -1.92 16 12 C -0.07 -0.58 9.69 -39.26 -0.38 -0.96 16 13 C -0.18 -1.60 9.02 -39.51 -0.36 -1.95 16 14 C 0.13 1.54 6.70 -39.05 -0.26 1.28 16 15 O -0.27 -3.90 9.45 -47.29 -0.45 -4.35 16 16 C 0.04 0.41 5.22 36.00 0.19 0.60 16 17 C 0.51 8.38 7.91 -10.99 -0.09 8.29 16 18 O -0.52 -11.21 16.50 -14.36 -0.24 -11.45 16 19 N -0.72 -11.73 5.56 -60.29 -0.33 -12.06 16 20 C 0.12 2.54 5.61 -4.04 -0.02 2.52 16 21 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 22 C -0.52 -14.23 9.11 -34.44 -0.31 -14.55 16 23 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 24 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 25 N -0.89 -25.68 13.29 55.43 0.74 -24.94 16 26 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 27 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 29 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 30 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.36 7.65 -51.93 -0.40 -0.03 16 32 H 0.06 0.36 7.67 -51.93 -0.40 -0.03 16 33 H 0.15 1.24 6.11 -52.49 -0.32 0.92 16 34 H 0.14 0.93 7.87 -52.49 -0.41 0.51 16 35 H 0.15 0.92 6.28 -52.49 -0.33 0.59 16 36 H 0.09 0.81 7.66 -51.93 -0.40 0.41 16 37 H 0.09 0.81 7.66 -51.93 -0.40 0.41 16 38 H 0.40 5.27 8.47 -40.82 -0.35 4.92 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.06 1.27 8.14 -51.92 -0.42 0.84 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.02 0.58 8.14 -51.92 -0.42 0.16 16 43 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 379.49 15.07 5.72 5.72 Total: -1.00 -36.85 379.49 -8.51 -45.37 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -7.71 Total: -3.21 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -2.94 Total: -2.56 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 2.47 Total: -41.59 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -1.04 Total: -19.85 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.85 -8.51 -45.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826175171.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.801 kcal (2) G-P(sol) polarization free energy of solvation -36.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds