Wall clock time and date at job start Wed Apr 1 2020 04:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.38340 * 120.01170 * 359.72565 * 3 2 1 5 5 C 1.39328 * 119.88102 * 179.70228 * 4 3 2 6 6 C 1.48431 * 120.04752 * 180.30319 * 5 4 3 7 7 N 1.34052 * 126.67483 * 359.97438 * 6 5 4 8 8 N 1.28990 * 107.26985 * 179.83904 * 7 6 5 9 9 N 1.28738 * 108.94147 * 0.43771 * 8 7 6 10 10 H 0.96997 * 125.33573 * 179.74044 * 9 8 7 11 11 N 1.28868 * 109.32356 * 359.72399 * 9 8 7 12 12 C 1.39325 * 119.90814 * 0.59267 * 5 4 3 13 13 C 1.38003 * 120.03242 * 359.68615 * 12 5 4 14 14 C 1.38662 * 120.12013 * 0.02562 * 13 12 5 15 15 O 1.35960 * 119.96372 * 179.97438 * 14 13 12 16 16 C 1.42907 * 116.99460 * 0.02562 * 15 14 13 17 17 C 1.50696 * 109.46810 * 179.97438 * 16 15 14 18 18 O 1.21284 * 120.00327 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99783 * 180.02562 * 17 16 15 20 20 C 1.46500 * 120.00074 * 179.97438 * 19 17 16 21 21 C 1.52996 * 109.47490 * 179.97438 * 20 19 17 22 22 C 1.50705 * 109.47570 * 179.97438 * 21 20 19 23 23 H 1.07999 * 119.99310 * 0.02562 * 22 21 20 24 24 C 1.37873 * 119.99848 * 180.02562 * 22 21 20 25 25 N 1.31509 * 120.00318 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99577 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.46992 * 359.97438 * 26 24 22 28 28 H 1.48491 * 109.47326 * 119.99760 * 26 24 22 29 29 H 1.48506 * 109.46603 * 240.00023 * 26 24 22 30 30 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 32 32 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 33 33 H 1.07998 * 120.06486 * 0.02562 * 4 3 2 34 34 H 1.08001 * 119.98663 * 179.70155 * 12 5 4 35 35 H 1.08002 * 119.94844 * 180.02562 * 13 12 5 36 36 H 1.08999 * 109.47063 * 299.99799 * 16 15 14 37 37 H 1.08996 * 109.46786 * 60.00046 * 16 15 14 38 38 H 0.96995 * 120.00479 * 359.97438 * 19 17 16 39 39 H 1.09005 * 109.47378 * 299.99877 * 20 19 17 40 40 H 1.09009 * 109.47140 * 59.99772 * 20 19 17 41 41 H 1.08998 * 109.47367 * 300.00607 * 21 20 19 42 42 H 1.09009 * 109.46831 * 59.99931 * 21 20 19 43 43 H 0.97006 * 120.00076 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2934 2.3721 -0.0057 5 6 1.9288 3.6120 0.0006 6 6 1.1243 4.8594 0.0012 7 7 -0.2132 4.9495 -0.0042 8 7 -0.5125 6.2042 0.0021 9 7 0.5750 6.8932 0.0019 10 1 0.6254 7.8619 0.0024 11 7 1.5861 6.0942 0.0013 12 6 3.3204 3.6795 0.0001 13 6 4.0681 2.5196 0.0000 14 6 3.4371 1.2849 -0.0002 15 8 4.1769 0.1442 -0.0009 16 6 5.5982 0.2928 -0.0007 17 6 6.2455 -1.0681 -0.0009 18 8 5.5575 -2.0669 -0.0006 19 7 7.5890 -1.1752 -0.0003 20 6 8.2183 -2.4981 0.0002 21 6 9.7400 -2.3391 0.0002 22 6 10.3874 -3.7000 0.0013 23 1 9.7747 -4.5894 0.0015 24 6 11.7618 -3.8096 0.0020 25 7 12.5078 -2.7265 0.0023 26 14 12.5642 -5.4965 0.0026 27 1 11.5125 -6.5449 0.0028 28 1 13.4096 -5.6430 -1.2093 29 1 13.4083 -5.6425 1.2157 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 0.2148 2.3171 -0.0098 34 1 3.8142 4.6400 0.0001 35 1 5.1468 2.5735 0.0001 36 1 5.9061 0.8421 -0.8904 37 1 5.9060 0.8411 0.8896 38 1 8.1392 -0.3765 -0.0001 39 1 7.9100 -3.0469 0.8901 40 1 7.9107 -3.0471 -0.8899 41 1 10.0480 -1.7905 -0.8898 42 1 10.0479 -1.7900 0.8901 43 1 13.4748 -2.8036 0.0025 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826175171.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:55 Heat of formation + Delta-G solvation = 12.368015 kcal Electronic energy + Delta-G solvation = -28290.213821 eV Core-core repulsion = 23952.529921 eV Total energy + Delta-G solvation = -4337.683901 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.45034 -41.73868 -40.69668 -39.30537 -38.15921 -36.57652 -35.33208 -34.83062 -34.29970 -32.08678 -31.48126 -31.08621 -29.19071 -28.20571 -26.51662 -25.74565 -25.13334 -23.46239 -22.81466 -22.57666 -21.57118 -20.29822 -19.63156 -18.59664 -18.40152 -18.19106 -18.13386 -17.51574 -17.20351 -16.64614 -16.59281 -16.42568 -16.31840 -15.91769 -15.69182 -15.22274 -15.01333 -14.73450 -14.41153 -14.27686 -13.76803 -13.76085 -13.69181 -13.20080 -13.10681 -12.95678 -12.65084 -12.53742 -12.47398 -12.34328 -12.27800 -12.24247 -12.09589 -12.09406 -11.66169 -11.42374 -11.37782 -10.86208 -10.59304 -10.05519 -9.78897 -8.86406 -8.22999 -6.32583 -0.34603 0.17144 0.27430 1.27190 1.41891 1.42689 1.43475 1.54270 1.55734 1.58704 2.33125 2.40920 2.62592 2.66705 2.72981 3.12210 3.16063 3.61183 3.86138 3.95172 4.00182 4.10563 4.16519 4.18557 4.28225 4.40001 4.41641 4.47547 4.50947 4.51300 4.64906 4.75444 4.87601 4.97134 5.14322 5.26625 5.32151 5.48601 5.51363 5.61219 5.62598 5.80263 5.99137 6.18156 6.49429 6.61838 6.80650 7.12175 7.24062 7.36681 8.88739 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.023196 B = 0.001599 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.838715 B =17506.034192 C =18681.818528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.082 3.918 4 C -0.130 4.130 5 C -0.030 4.030 6 C 0.215 3.785 7 N -0.296 5.296 8 N -0.057 5.057 9 N -0.200 5.200 10 H 0.495 0.505 11 N -0.291 5.291 12 C -0.065 4.065 13 C -0.168 4.168 14 C 0.105 3.895 15 O -0.308 6.308 16 C 0.042 3.958 17 C 0.505 3.495 18 O -0.580 6.580 19 N -0.708 5.708 20 C 0.141 3.859 21 C 0.022 3.978 22 C -0.547 4.547 23 H 0.056 0.944 24 C 0.009 3.991 25 N -0.924 5.924 26 Si 0.962 3.038 27 H -0.268 1.268 28 H -0.277 1.277 29 H -0.277 1.277 30 H 0.113 0.887 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.155 0.845 34 H 0.161 0.839 35 H 0.177 0.823 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.417 0.583 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.013 0.987 42 H 0.013 0.987 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.911 23.926 -0.004 33.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.245 6.245 3 C 0.036 3.964 4 C -0.150 4.150 5 C -0.034 4.034 6 C -0.065 4.065 7 N -0.168 5.168 8 N -0.052 5.052 9 N -0.051 5.051 10 H 0.354 0.646 11 N -0.143 5.143 12 C -0.085 4.085 13 C -0.186 4.186 14 C 0.058 3.942 15 O -0.221 6.221 16 C -0.035 4.035 17 C 0.292 3.708 18 O -0.459 6.459 19 N -0.361 5.361 20 C 0.017 3.983 21 C -0.016 4.016 22 C -0.586 4.586 23 H 0.075 0.925 24 C -0.190 4.190 25 N -0.564 5.564 26 Si 0.787 3.213 27 H -0.192 1.192 28 H -0.202 1.202 29 H -0.203 1.203 30 H 0.131 0.869 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.173 0.827 34 H 0.178 0.822 35 H 0.194 0.806 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.254 0.746 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.032 0.968 42 H 0.032 0.968 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -24.792 23.235 -0.007 33.978 hybrid contribution 1.089 -0.100 0.002 1.093 sum -23.703 23.134 -0.005 33.121 Atomic orbital electron populations 1.23360 0.76524 1.05435 1.02416 1.86238 1.23284 1.25950 1.89057 1.18288 0.89394 0.85552 1.03129 1.21027 1.01015 0.89478 1.03513 1.16954 0.92089 0.86662 1.07668 1.23632 0.88718 0.92203 1.01913 1.76062 1.12859 1.08859 1.19051 1.78868 1.13098 0.98160 1.15108 1.47802 0.99927 1.13529 1.43837 0.64611 1.74899 1.16463 1.00964 1.21997 1.21089 0.91096 0.99587 0.96713 1.21345 1.02395 0.89116 1.05738 1.18826 0.88509 0.86499 1.00350 1.86239 1.18175 1.29085 1.88591 1.22726 0.79081 0.94332 1.07367 1.20772 0.82539 0.91453 0.76085 1.90724 1.63730 1.40672 1.50782 1.45915 1.05684 1.10552 1.73986 1.21249 0.93947 0.83170 0.99891 1.19155 0.88892 0.96736 0.96775 1.21503 0.92185 0.93444 1.51430 0.92523 1.25810 0.97986 1.00688 0.94469 1.70046 1.05503 1.29765 1.51064 0.85437 0.78365 0.79608 0.77878 1.19181 1.20243 1.20255 0.86916 0.91418 0.91413 0.82742 0.82187 0.80613 0.85061 0.85073 0.74636 0.93585 0.93591 0.96830 0.96836 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -8.56 10.27 -79.44 -0.82 -9.38 16 3 C 0.08 1.91 6.69 22.54 0.15 2.06 16 4 C -0.13 -2.46 8.69 22.56 0.20 -2.26 16 5 C -0.03 -0.52 5.88 -20.04 -0.12 -0.64 16 6 C 0.21 3.73 7.93 137.36 1.09 4.81 16 7 N -0.30 -5.57 12.23 -52.19 -0.64 -6.21 16 8 N -0.06 -0.84 13.47 37.02 0.50 -0.34 16 9 N -0.20 -1.71 7.90 37.02 0.29 -1.42 16 10 H 0.49 -0.75 8.96 -347.54 -3.12 -3.86 16 11 N -0.29 -3.87 12.07 -52.14 -0.63 -4.50 16 12 C -0.06 -0.91 9.69 22.48 0.22 -0.69 16 13 C -0.17 -2.49 9.02 22.32 0.20 -2.29 16 14 C 0.11 2.38 6.70 22.61 0.15 2.53 16 15 O -0.31 -8.68 9.45 -66.64 -0.63 -9.30 16 16 C 0.04 0.89 5.22 71.23 0.37 1.26 16 17 C 0.51 16.40 7.91 87.66 0.69 17.09 16 18 O -0.58 -25.42 16.50 15.99 0.26 -25.16 16 19 N -0.71 -22.61 5.56 -463.05 -2.57 -25.19 16 20 C 0.14 5.90 5.61 86.38 0.48 6.39 16 21 C 0.02 1.06 5.09 29.85 0.15 1.22 16 22 C -0.55 -30.14 9.11 25.60 0.23 -29.91 16 23 H 0.06 3.09 7.74 -2.91 -0.02 3.06 16 24 C 0.01 0.52 5.46 84.65 0.46 0.98 16 25 N -0.92 -53.04 13.29 21.45 0.28 -52.75 16 26 Si 0.96 43.23 29.54 68.60 2.03 45.26 16 27 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 28 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 29 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 30 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.07 0.88 7.65 -2.39 -0.02 0.86 16 32 H 0.07 0.88 7.67 -2.38 -0.02 0.86 16 33 H 0.16 2.58 6.11 -2.91 -0.02 2.56 16 34 H 0.16 1.54 7.87 -2.91 -0.02 1.52 16 35 H 0.18 1.42 6.28 -2.91 -0.02 1.40 16 36 H 0.13 1.76 7.66 -2.39 -0.02 1.74 16 37 H 0.13 1.76 7.66 -2.39 -0.02 1.74 16 38 H 0.42 10.29 8.47 -92.71 -0.79 9.51 16 39 H 0.05 2.03 8.14 -2.38 -0.02 2.02 16 40 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 41 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.01 0.67 8.14 -2.38 -0.02 0.65 16 43 H 0.27 14.31 8.31 -92.70 -0.77 13.54 16 Total: -1.00 -81.85 379.49 0.68 -81.18 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -2.80 Total: 5.88 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 5.40 Total: 1.93 kcal Atomic # 7 Polarization: -87.64 SS G_CDS: -2.76 Total: -90.41 kcal Atomic # 8 Polarization: -42.66 SS G_CDS: -1.18 Total: -43.84 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -81.85 0.68 -81.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826175171.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.545 kcal (2) G-P(sol) polarization free energy of solvation -81.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds