Wall clock time and date at job start Wed Apr 1 2020 04:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86799 * 120.00064 * 2 1 4 4 H 1.48500 * 109.47256 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46723 * 299.99740 * 3 2 1 6 6 H 1.48501 * 109.47414 * 60.00000 * 3 2 1 7 7 C 1.38952 * 120.00110 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99989 * 171.25697 * 7 2 1 9 9 N 1.37095 * 120.00165 * 351.26385 * 7 2 1 10 10 C 1.46504 * 119.99809 * 22.98848 * 9 7 2 11 11 C 1.50698 * 109.47132 * 270.00147 * 10 9 7 12 12 O 1.20820 * 120.00525 * 0.02562 * 11 10 9 13 13 O 1.34232 * 120.00029 * 179.97438 * 11 10 9 14 14 C 1.34774 * 120.00190 * 202.99841 * 9 7 2 15 15 O 1.21297 * 120.00048 * 185.01445 * 14 9 7 16 16 C 1.50703 * 120.00024 * 5.01036 * 14 9 7 17 17 C 1.53002 * 109.47144 * 174.80204 * 16 14 9 18 18 C 1.52998 * 109.46952 * 179.97438 * 17 16 14 19 19 O 1.42901 * 109.46903 * 179.97438 * 18 17 16 20 20 C 1.35900 * 116.99745 * 180.02562 * 19 18 17 21 21 C 1.38747 * 120.09687 * 0.02562 * 20 19 18 22 22 C 1.37999 * 119.88473 * 180.02562 * 21 20 19 23 23 C 1.38553 * 120.28487 * 359.97438 * 22 21 20 24 24 C 1.38258 * 119.94035 * 0.02562 * 23 22 21 25 25 C 1.38413 * 119.90395 * 0.02562 * 24 23 22 26 26 C 1.51383 * 109.75365 * 180.02562 * 24 23 22 27 27 C 1.54340 * 105.17062 * 342.80343 * 26 24 23 28 28 C 1.51691 * 130.23740 * 179.83939 * 23 22 21 29 29 H 0.97002 * 120.00393 * 5.01206 * 1 2 3 30 30 H 1.08994 * 109.46902 * 30.00758 * 10 9 7 31 31 H 1.09000 * 109.46838 * 150.00663 * 10 9 7 32 32 H 0.96693 * 117.00210 * 180.02562 * 13 11 10 33 33 H 1.08994 * 109.46843 * 54.79855 * 16 14 9 34 34 H 1.09003 * 109.46897 * 294.79675 * 16 14 9 35 35 H 1.08999 * 109.47078 * 60.00096 * 17 16 14 36 36 H 1.08990 * 109.46952 * 299.99894 * 17 16 14 37 37 H 1.08999 * 109.46895 * 60.00297 * 18 17 16 38 38 H 1.08990 * 109.47462 * 299.99896 * 18 17 16 39 39 H 1.08009 * 120.05801 * 0.02611 * 21 20 19 40 40 H 1.07998 * 119.85780 * 180.02562 * 22 21 20 41 41 H 1.08002 * 119.91496 * 180.02562 * 25 24 23 42 42 H 1.08999 * 110.30265 * 223.88004 * 26 24 23 43 43 H 1.09000 * 110.38218 * 101.76919 * 26 24 23 44 44 H 1.09003 * 110.81782 * 144.58901 * 27 26 24 45 45 H 1.08994 * 110.82124 * 267.94211 * 27 26 24 46 46 H 1.09007 * 110.25435 * 78.27235 * 28 23 22 47 47 H 1.09002 * 110.49867 * 316.02508 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3963 -1.2126 6 1 1.8894 2.3965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0794 -1.2088 -0.1416 9 7 1.3354 -2.3837 0.1814 10 6 -0.0953 -2.4648 -0.1233 11 6 -0.8916 -2.1136 1.1070 12 8 -0.3226 -1.8247 2.1329 13 8 -2.2332 -2.1207 1.0628 14 6 1.9894 -3.4694 0.6396 15 8 1.4166 -4.5361 0.7136 16 6 3.4322 -3.3581 1.0601 17 6 3.8937 -4.6893 1.6568 18 6 5.3587 -4.5765 2.0831 19 8 5.7895 -5.8196 2.6410 20 6 7.0761 -5.8890 3.0730 21 6 7.9076 -4.7837 2.9632 22 6 9.2135 -4.8592 3.4029 23 6 9.6982 -6.0342 3.9543 24 6 8.8717 -7.1371 4.0648 25 6 7.5618 -7.0646 3.6237 26 6 9.6315 -8.2848 4.6949 27 6 11.1216 -7.9076 4.5555 28 6 11.0744 -6.3661 4.4994 29 1 -0.4851 0.8368 -0.0734 30 1 -0.3364 -1.7657 -0.9240 31 1 -0.3427 -3.4783 -0.4390 32 1 -2.7005 -1.8882 1.8768 33 1 3.5333 -2.5707 1.8069 34 1 4.0460 -3.1169 0.1922 35 1 3.7926 -5.4767 0.9100 36 1 3.2799 -4.9306 2.5246 37 1 5.4602 -3.7890 2.8299 38 1 5.9722 -4.3354 1.2151 39 1 7.5333 -3.8657 2.5344 40 1 9.8601 -3.9985 3.3176 41 1 6.9158 -7.9258 3.7103 42 1 9.4249 -9.2130 4.1621 43 1 9.3636 -8.3854 5.7467 44 1 11.6898 -8.2467 5.4218 45 1 11.5402 -8.3159 3.6356 46 1 11.1955 -5.9476 5.4986 47 1 11.8501 -5.9879 3.8335 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833066272.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:43 Heat of formation + Delta-G solvation = -142.390427 kcal Electronic energy + Delta-G solvation = -29491.985908 eV Core-core repulsion = 25218.838770 eV Total energy + Delta-G solvation = -4273.147138 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.53336 -39.37143 -38.73607 -38.12217 -35.35176 -35.02021 -34.50165 -33.21059 -31.60350 -31.45268 -28.76177 -28.45458 -27.46017 -26.08337 -24.67470 -23.09638 -21.97876 -21.03075 -20.66810 -20.38698 -19.25351 -17.79265 -17.01469 -16.82218 -16.34698 -16.22173 -15.97640 -15.82961 -15.50861 -15.26226 -14.66860 -14.39850 -14.35512 -14.29844 -14.15082 -13.53898 -13.15656 -13.10172 -13.04560 -12.48654 -12.44906 -12.19001 -11.88486 -11.70390 -11.66728 -11.54138 -11.46314 -11.32279 -11.25114 -11.18233 -10.95027 -10.69972 -10.67370 -10.56506 -10.42644 -10.26905 -10.24305 -9.58078 -9.08715 -8.91497 -8.66049 -8.06983 -8.01677 -6.50898 -4.13824 1.20492 1.33490 3.03078 3.12128 3.15680 3.17230 3.57866 3.60790 3.74726 3.98717 4.24578 4.29923 4.33256 4.70272 4.72068 4.77310 4.86089 4.98873 5.08148 5.13205 5.17471 5.18276 5.34140 5.41326 5.43727 5.44733 5.52128 5.64104 5.67101 5.78342 5.84197 5.86181 6.02342 6.04861 6.18691 6.23836 6.31524 6.43755 6.51102 6.54740 6.62756 6.68615 6.72691 6.88348 7.25479 7.46120 7.55844 7.66136 8.18967 8.91648 9.20346 9.31106 9.70544 10.50941 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.017245 B = 0.001976 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.253879 B =14166.701049 C =15361.654757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.040 3.960 3 Si 0.934 3.066 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.326 4.326 8 H 0.104 0.896 9 N -0.435 5.435 10 C 0.154 3.846 11 C 0.504 3.496 12 O -0.525 6.525 13 O -0.533 6.533 14 C 0.473 3.527 15 O -0.602 6.602 16 C -0.115 4.115 17 C -0.100 4.100 18 C 0.061 3.939 19 O -0.312 6.312 20 C 0.139 3.861 21 C -0.209 4.209 22 C -0.067 4.067 23 C -0.145 4.145 24 C -0.061 4.061 25 C -0.145 4.145 26 C -0.082 4.082 27 C -0.121 4.121 28 C -0.076 4.076 29 H 0.273 0.727 30 H 0.138 0.862 31 H 0.077 0.923 32 H 0.388 0.612 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.132 0.868 40 H 0.121 0.879 41 H 0.128 0.872 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.484 -8.376 5.133 19.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.163 4.163 3 Si 0.760 3.240 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.453 4.453 8 H 0.121 0.879 9 N -0.154 5.154 10 C 0.028 3.972 11 C 0.346 3.654 12 O -0.412 6.412 13 O -0.344 6.344 14 C 0.262 3.738 15 O -0.488 6.488 16 C -0.155 4.155 17 C -0.138 4.138 18 C -0.014 4.014 19 O -0.226 6.226 20 C 0.093 3.907 21 C -0.227 4.227 22 C -0.085 4.085 23 C -0.145 4.145 24 C -0.061 4.061 25 C -0.164 4.164 26 C -0.119 4.119 27 C -0.158 4.158 28 C -0.113 4.113 29 H 0.084 0.916 30 H 0.155 0.845 31 H 0.095 0.905 32 H 0.244 0.756 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.150 0.850 40 H 0.139 0.861 41 H 0.146 0.854 42 H 0.094 0.906 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 16.272 -8.892 5.124 19.238 hybrid contribution -0.044 1.715 0.504 1.788 sum 16.228 -7.178 5.628 18.616 Atomic orbital electron populations 1.69606 1.06276 1.28089 1.48560 1.25325 0.95603 1.00050 0.95301 0.85758 0.79370 0.80903 0.77921 1.19223 1.20647 1.20563 1.19711 0.93705 0.82505 1.49347 0.87884 1.43342 1.06129 1.10093 1.55855 1.20590 0.81021 1.01544 0.94028 1.23724 0.79352 0.71745 0.90566 1.90539 1.71050 1.45745 1.33870 1.84532 1.22743 1.83493 1.43613 1.20133 0.89120 0.84211 0.80305 1.90550 1.70187 1.28613 1.59410 1.21231 0.95078 0.97298 1.01849 1.21248 0.91613 0.98550 1.02384 1.22968 0.97020 0.84007 0.97440 1.86084 1.24386 1.37143 1.74943 1.18854 0.83928 0.93882 0.94029 1.21217 0.95023 0.98948 1.07553 1.20384 0.94658 0.96784 0.96663 1.20510 0.96706 0.94270 1.02994 1.20282 0.92693 0.96116 0.97030 1.19793 0.95222 0.97111 1.04234 1.21052 0.93856 0.96270 1.00682 1.22285 0.95850 0.95339 1.02340 1.21004 0.93618 0.95866 1.00780 0.91579 0.84458 0.90524 0.75599 0.89190 0.89913 0.90398 0.90539 0.91893 0.91952 0.85031 0.86101 0.85432 0.90566 0.90047 0.90641 0.90985 0.90633 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.28 8.21 55.50 0.46 -21.82 16 2 C 0.04 0.98 5.41 -17.47 -0.09 0.89 16 3 Si 0.93 19.14 29.56 -169.99 -5.03 14.11 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 6 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 7 C -0.33 -7.87 9.00 -14.93 -0.13 -8.01 16 8 H 0.10 2.29 6.72 -52.49 -0.35 1.93 16 9 N -0.43 -10.71 2.11 -116.09 -0.25 -10.96 16 10 C 0.15 3.69 5.29 -5.19 -0.03 3.66 16 11 C 0.50 12.33 6.29 36.00 0.23 12.56 16 12 O -0.52 -14.44 16.95 -18.75 -0.32 -14.76 16 13 O -0.53 -10.84 13.42 -39.26 -0.53 -11.37 16 14 C 0.47 11.17 7.62 -10.99 -0.08 11.08 16 15 O -0.60 -15.52 15.54 5.54 0.09 -15.44 16 16 C -0.11 -2.13 4.25 -27.88 -0.12 -2.25 16 17 C -0.10 -1.69 4.89 -26.73 -0.13 -1.82 16 18 C 0.06 0.85 4.74 37.16 0.18 1.02 16 19 O -0.31 -4.74 10.14 -19.43 -0.20 -4.94 16 20 C 0.14 1.91 6.68 -39.26 -0.26 1.65 16 21 C -0.21 -2.55 9.04 -39.48 -0.36 -2.91 16 22 C -0.07 -0.73 10.03 -39.55 -0.40 -1.12 16 23 C -0.14 -1.52 6.15 -104.01 -0.64 -2.16 16 24 C -0.06 -0.67 6.13 -104.22 -0.64 -1.31 16 25 C -0.14 -1.82 9.98 -39.38 -0.39 -2.21 16 26 C -0.08 -0.64 6.77 -26.85 -0.18 -0.82 16 27 C -0.12 -0.79 7.07 -25.33 -0.18 -0.96 16 28 C -0.08 -0.58 6.79 -26.70 -0.18 -0.76 16 29 H 0.27 6.61 8.32 -40.82 -0.34 6.27 16 30 H 0.14 3.31 6.28 -51.93 -0.33 2.99 16 31 H 0.08 1.76 7.36 -51.93 -0.38 1.38 16 32 H 0.39 6.14 9.10 45.56 0.41 6.55 16 33 H 0.09 1.66 8.03 -51.93 -0.42 1.24 16 34 H 0.08 1.37 7.74 -51.93 -0.40 0.97 16 35 H 0.08 1.37 8.04 -51.93 -0.42 0.95 16 36 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.06 0.82 7.66 -51.93 -0.40 0.42 16 38 H 0.06 0.77 7.67 -51.93 -0.40 0.38 16 39 H 0.13 1.45 6.31 -52.48 -0.33 1.12 16 40 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16 47 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 389.73 15.07 5.87 5.87 Total: -1.00 -31.95 389.73 -9.26 -41.21 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -5.95 Total: 11.56 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: -3.42 Total: 6.52 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 0.21 Total: -32.78 kcal Atomic # 8 Polarization: -45.55 SS G_CDS: -0.96 Total: -46.50 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.95 -9.26 -41.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066272.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.179 kcal (2) G-P(sol) polarization free energy of solvation -31.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds