Wall clock time and date at job start Wed Apr 1 2020 04:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86799 * 120.00064 * 2 1 4 4 H 1.48500 * 109.47256 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46723 * 299.99740 * 3 2 1 6 6 H 1.48501 * 109.47414 * 60.00000 * 3 2 1 7 7 C 1.38952 * 120.00110 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99989 * 171.25697 * 7 2 1 9 9 N 1.37095 * 120.00165 * 351.26385 * 7 2 1 10 10 C 1.46504 * 119.99809 * 22.98848 * 9 7 2 11 11 C 1.50698 * 109.47132 * 270.00147 * 10 9 7 12 12 O 1.20820 * 120.00525 * 0.02562 * 11 10 9 13 13 O 1.34232 * 120.00029 * 179.97438 * 11 10 9 14 14 C 1.34774 * 120.00190 * 202.99841 * 9 7 2 15 15 O 1.21297 * 120.00048 * 185.01445 * 14 9 7 16 16 C 1.50703 * 120.00024 * 5.01036 * 14 9 7 17 17 C 1.53002 * 109.47144 * 174.80204 * 16 14 9 18 18 C 1.52998 * 109.46952 * 179.97438 * 17 16 14 19 19 O 1.42901 * 109.46903 * 179.97438 * 18 17 16 20 20 C 1.35900 * 116.99745 * 180.02562 * 19 18 17 21 21 C 1.38747 * 120.09687 * 0.02562 * 20 19 18 22 22 C 1.37999 * 119.88473 * 180.02562 * 21 20 19 23 23 C 1.38553 * 120.28487 * 359.97438 * 22 21 20 24 24 C 1.38258 * 119.94035 * 0.02562 * 23 22 21 25 25 C 1.38413 * 119.90395 * 0.02562 * 24 23 22 26 26 C 1.51383 * 109.75365 * 180.02562 * 24 23 22 27 27 C 1.54340 * 105.17062 * 342.80343 * 26 24 23 28 28 C 1.51691 * 130.23740 * 179.83939 * 23 22 21 29 29 H 0.97002 * 120.00393 * 5.01206 * 1 2 3 30 30 H 1.08994 * 109.46902 * 30.00758 * 10 9 7 31 31 H 1.09000 * 109.46838 * 150.00663 * 10 9 7 32 32 H 0.96693 * 117.00210 * 180.02562 * 13 11 10 33 33 H 1.08994 * 109.46843 * 54.79855 * 16 14 9 34 34 H 1.09003 * 109.46897 * 294.79675 * 16 14 9 35 35 H 1.08999 * 109.47078 * 60.00096 * 17 16 14 36 36 H 1.08990 * 109.46952 * 299.99894 * 17 16 14 37 37 H 1.08999 * 109.46895 * 60.00297 * 18 17 16 38 38 H 1.08990 * 109.47462 * 299.99896 * 18 17 16 39 39 H 1.08009 * 120.05801 * 0.02611 * 21 20 19 40 40 H 1.07998 * 119.85780 * 180.02562 * 22 21 20 41 41 H 1.08002 * 119.91496 * 180.02562 * 25 24 23 42 42 H 1.08999 * 110.30265 * 223.88004 * 26 24 23 43 43 H 1.09000 * 110.38218 * 101.76919 * 26 24 23 44 44 H 1.09003 * 110.81782 * 144.58901 * 27 26 24 45 45 H 1.08994 * 110.82124 * 267.94211 * 27 26 24 46 46 H 1.09007 * 110.25435 * 78.27235 * 28 23 22 47 47 H 1.09002 * 110.49867 * 316.02508 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3963 -1.2126 6 1 1.8894 2.3965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0794 -1.2088 -0.1416 9 7 1.3354 -2.3837 0.1814 10 6 -0.0953 -2.4648 -0.1233 11 6 -0.8916 -2.1136 1.1070 12 8 -0.3226 -1.8247 2.1329 13 8 -2.2332 -2.1207 1.0628 14 6 1.9894 -3.4694 0.6396 15 8 1.4166 -4.5361 0.7136 16 6 3.4322 -3.3581 1.0601 17 6 3.8937 -4.6893 1.6568 18 6 5.3587 -4.5765 2.0831 19 8 5.7895 -5.8196 2.6410 20 6 7.0761 -5.8890 3.0730 21 6 7.9076 -4.7837 2.9632 22 6 9.2135 -4.8592 3.4029 23 6 9.6982 -6.0342 3.9543 24 6 8.8717 -7.1371 4.0648 25 6 7.5618 -7.0646 3.6237 26 6 9.6315 -8.2848 4.6949 27 6 11.1216 -7.9076 4.5555 28 6 11.0744 -6.3661 4.4994 29 1 -0.4851 0.8368 -0.0734 30 1 -0.3364 -1.7657 -0.9240 31 1 -0.3427 -3.4783 -0.4390 32 1 -2.7005 -1.8882 1.8768 33 1 3.5333 -2.5707 1.8069 34 1 4.0460 -3.1169 0.1922 35 1 3.7926 -5.4767 0.9100 36 1 3.2799 -4.9306 2.5246 37 1 5.4602 -3.7890 2.8299 38 1 5.9722 -4.3354 1.2151 39 1 7.5333 -3.8657 2.5344 40 1 9.8601 -3.9985 3.3176 41 1 6.9158 -7.9258 3.7103 42 1 9.4249 -9.2130 4.1621 43 1 9.3636 -8.3854 5.7467 44 1 11.6898 -8.2467 5.4218 45 1 11.5402 -8.3159 3.6356 46 1 11.1955 -5.9476 5.4986 47 1 11.8501 -5.9879 3.8335 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833066272.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:42 Heat of formation + Delta-G solvation = -159.780629 kcal Electronic energy + Delta-G solvation = -29492.740004 eV Core-core repulsion = 25218.838770 eV Total energy + Delta-G solvation = -4273.901234 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.42356 -41.21518 -40.08098 -39.55480 -37.12118 -36.41070 -35.90682 -34.55578 -33.46402 -32.30773 -30.28665 -29.35875 -28.50213 -27.36508 -26.41979 -24.04257 -23.28062 -22.21483 -21.66284 -21.46690 -21.07188 -19.04940 -18.81649 -18.35417 -18.00505 -17.52513 -17.21908 -17.02549 -16.52265 -16.24777 -16.16961 -16.14046 -15.88154 -15.83371 -15.39919 -14.58708 -14.47718 -14.36228 -13.78752 -13.74324 -13.68035 -13.46023 -13.28478 -13.10557 -13.01829 -12.87171 -12.74651 -12.51176 -12.45487 -12.30984 -12.17127 -12.12245 -12.01283 -12.00420 -11.72409 -11.53816 -11.50760 -11.29226 -10.97834 -10.53317 -9.91235 -9.76580 -8.96213 -8.34003 -6.02102 0.34866 0.45031 1.39779 1.48284 1.60399 1.73426 1.87940 2.09133 2.27683 2.55851 2.74422 2.99904 3.18447 3.57429 3.68013 3.87253 3.93437 3.97078 4.14545 4.16054 4.22050 4.33757 4.37500 4.40962 4.44244 4.50829 4.53800 4.63654 4.75033 4.79350 4.87842 4.88075 4.97807 5.00811 5.04720 5.08265 5.12607 5.25461 5.26788 5.33863 5.40393 5.42831 5.44659 5.69010 5.73082 5.84905 5.91635 6.33540 6.47093 7.06044 7.37839 7.46974 7.86040 8.68043 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.017245 B = 0.001976 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.253879 B =14166.701049 C =15361.654757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.006 4.006 3 Si 0.999 3.001 4 H -0.248 1.248 5 H -0.276 1.276 6 H -0.294 1.294 7 C -0.339 4.339 8 H 0.123 0.877 9 N -0.446 5.446 10 C 0.150 3.850 11 C 0.507 3.493 12 O -0.561 6.561 13 O -0.522 6.522 14 C 0.457 3.543 15 O -0.633 6.633 16 C -0.104 4.104 17 C -0.090 4.090 18 C 0.069 3.931 19 O -0.335 6.335 20 C 0.111 3.889 21 C -0.217 4.217 22 C -0.074 4.074 23 C -0.149 4.149 24 C -0.071 4.071 25 C -0.164 4.164 26 C -0.084 4.084 27 C -0.116 4.116 28 C -0.076 4.076 29 H 0.272 0.728 30 H 0.134 0.866 31 H 0.079 0.921 32 H 0.410 0.590 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.066 0.934 36 H 0.052 0.948 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.125 0.875 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.096 0.904 45 H 0.075 0.925 46 H 0.086 0.914 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.412 -7.679 5.464 21.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.206 4.206 3 Si 0.823 3.177 4 H -0.171 1.171 5 H -0.202 1.202 6 H -0.221 1.221 7 C -0.466 4.466 8 H 0.140 0.860 9 N -0.165 5.165 10 C 0.024 3.976 11 C 0.351 3.649 12 O -0.452 6.452 13 O -0.333 6.333 14 C 0.248 3.752 15 O -0.521 6.521 16 C -0.144 4.144 17 C -0.128 4.128 18 C -0.006 4.006 19 O -0.249 6.249 20 C 0.066 3.934 21 C -0.235 4.235 22 C -0.091 4.091 23 C -0.150 4.150 24 C -0.071 4.071 25 C -0.182 4.182 26 C -0.120 4.120 27 C -0.153 4.153 28 C -0.112 4.112 29 H 0.082 0.918 30 H 0.152 0.848 31 H 0.097 0.903 32 H 0.269 0.731 33 H 0.113 0.887 34 H 0.127 0.873 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.159 0.841 40 H 0.162 0.838 41 H 0.143 0.857 42 H 0.100 0.900 43 H 0.108 0.892 44 H 0.115 0.885 45 H 0.094 0.906 46 H 0.104 0.896 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 19.192 -8.206 5.444 21.571 hybrid contribution -1.033 1.433 0.423 1.816 sum 18.159 -6.773 5.867 20.250 Atomic orbital electron populations 1.69698 1.07506 1.28531 1.49194 1.26205 0.96399 1.03080 0.94911 0.84764 0.79248 0.76616 0.77079 1.17112 1.20181 1.22119 1.20173 0.94683 0.82426 1.49312 0.85974 1.43610 1.06328 1.10667 1.55915 1.20606 0.81544 1.01451 0.93989 1.23755 0.80314 0.70859 0.90003 1.90512 1.72054 1.47587 1.35034 1.84459 1.20996 1.82863 1.45015 1.21014 0.91017 0.83492 0.79656 1.90517 1.71356 1.29660 1.60589 1.21193 0.92107 0.98186 1.02916 1.21074 0.93473 0.97325 1.00946 1.22831 0.95059 0.84132 0.98572 1.86021 1.25641 1.37589 1.75661 1.19102 0.83598 0.95076 0.95605 1.21400 0.95533 0.98813 1.07787 1.20713 0.94451 0.97860 0.96120 1.21002 0.98158 0.93856 1.01936 1.20696 0.92156 0.97685 0.96540 1.19995 0.96274 0.96986 1.04992 1.21171 0.94500 0.95429 1.00942 1.22321 0.94883 0.94511 1.03577 1.21106 0.92013 0.96733 1.01391 0.91803 0.84819 0.90317 0.73075 0.88734 0.87271 0.91557 0.92899 0.90770 0.89936 0.84051 0.83811 0.85681 0.89963 0.89172 0.88518 0.90582 0.89571 0.89758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.73 8.21 21.66 0.18 -45.56 16 2 C -0.01 -0.29 5.41 84.93 0.46 0.17 16 3 Si 1.00 38.28 29.56 68.60 2.03 40.31 16 4 H -0.25 -8.63 7.11 99.48 0.71 -7.92 16 5 H -0.28 -10.31 7.11 99.48 0.71 -9.60 16 6 H -0.29 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.34 -16.15 9.00 84.04 0.76 -15.40 16 8 H 0.12 5.18 6.72 -2.91 -0.02 5.16 16 9 N -0.45 -22.12 2.11 -639.60 -1.35 -23.47 16 10 C 0.15 7.30 5.29 85.63 0.45 7.75 16 11 C 0.51 25.05 6.29 71.24 0.45 25.50 16 12 O -0.56 -31.30 16.95 21.98 0.37 -30.93 16 13 O -0.52 -21.00 13.42 -51.43 -0.69 -21.69 16 14 C 0.46 21.82 7.62 87.66 0.67 22.49 16 15 O -0.63 -33.53 15.54 -3.08 -0.05 -33.58 16 16 C -0.10 -3.82 4.25 29.85 0.13 -3.69 16 17 C -0.09 -3.07 4.89 30.59 0.15 -2.92 16 18 C 0.07 1.88 4.74 71.98 0.34 2.22 16 19 O -0.33 -10.33 10.14 -92.43 -0.94 -11.27 16 20 C 0.11 3.07 6.68 22.48 0.15 3.22 16 21 C -0.22 -5.08 9.04 22.33 0.20 -4.87 16 22 C -0.07 -1.47 10.03 22.29 0.22 -1.25 16 23 C -0.15 -2.86 6.15 -19.47 -0.12 -2.98 16 24 C -0.07 -1.47 6.13 -19.60 -0.12 -1.59 16 25 C -0.16 -4.16 9.98 22.40 0.22 -3.94 16 26 C -0.08 -1.16 6.77 30.52 0.21 -0.95 16 27 C -0.12 -1.16 7.07 31.50 0.22 -0.94 16 28 C -0.08 -0.93 6.79 30.61 0.21 -0.72 16 29 H 0.27 13.15 8.32 -92.71 -0.77 12.38 16 30 H 0.13 6.57 6.28 -2.39 -0.02 6.56 16 31 H 0.08 3.72 7.36 -2.39 -0.02 3.70 16 32 H 0.41 12.60 9.10 -74.06 -0.67 11.93 16 33 H 0.09 3.39 8.03 -2.39 -0.02 3.37 16 34 H 0.11 3.40 7.74 -2.39 -0.02 3.38 16 35 H 0.07 2.38 8.04 -2.39 -0.02 2.37 16 36 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.07 1.85 7.66 -2.39 -0.02 1.83 16 38 H 0.08 1.91 7.67 -2.39 -0.02 1.89 16 39 H 0.14 2.89 6.31 -2.91 -0.02 2.87 16 40 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 41 H 0.13 3.05 8.06 -2.91 -0.02 3.03 16 42 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.09 1.09 8.14 -2.39 -0.02 1.08 16 44 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 47 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -69.68 389.73 4.48 -65.20 By element: Atomic # 1 Polarization: 38.56 SS G_CDS: 0.33 Total: 38.89 kcal Atomic # 6 Polarization: 17.50 SS G_CDS: 4.60 Total: 22.10 kcal Atomic # 7 Polarization: -67.85 SS G_CDS: -1.17 Total: -69.02 kcal Atomic # 8 Polarization: -96.16 SS G_CDS: -1.30 Total: -97.47 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.31 kcal Total: -69.68 4.48 -65.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066272.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.582 kcal (2) G-P(sol) polarization free energy of solvation -69.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds