Wall clock time and date at job start Wed Apr 1 2020 04:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86796 * 120.00346 * 2 1 4 4 H 1.48500 * 109.47665 * 240.00215 * 3 2 1 5 5 H 1.48500 * 109.46928 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47607 * 119.99701 * 3 2 1 7 7 C 1.38656 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00409 * 180.02562 * 7 2 1 9 9 O 1.34827 * 119.99819 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00157 * 185.55020 * 9 7 2 11 11 C 1.38878 * 120.06980 * 6.08930 * 10 9 7 12 12 C 1.38097 * 119.93338 * 180.02562 * 11 10 9 13 13 C 1.38305 * 120.06874 * 0.02562 * 12 11 10 14 14 C 1.50695 * 119.93001 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46983 * 90.00514 * 14 13 12 16 16 O 1.21279 * 119.99787 * 359.97438 * 15 14 13 17 17 N 1.34777 * 119.99841 * 180.02562 * 15 14 13 18 18 C 1.46501 * 120.00051 * 4.97659 * 17 15 14 19 19 C 1.50706 * 109.46864 * 276.52265 * 18 17 15 20 20 O 1.20825 * 120.00089 * 356.60751 * 19 18 17 21 21 O 1.34234 * 119.99581 * 176.60310 * 19 18 17 22 22 C 1.46504 * 119.99852 * 184.97837 * 17 15 14 23 23 C 1.54268 * 110.03279 * 117.52198 * 22 17 15 24 24 C 1.54967 * 104.15669 * 95.75644 * 23 22 17 25 25 C 1.54890 * 102.78067 * 37.88706 * 24 23 22 26 26 C 1.53874 * 110.03211 * 234.74388 * 22 17 15 27 27 C 1.38303 * 120.13630 * 0.25002 * 13 12 11 28 28 C 1.38097 * 120.06770 * 359.45193 * 27 13 12 29 29 H 0.96998 * 119.99714 * 359.97438 * 1 2 3 30 30 H 1.08005 * 120.03202 * 359.97438 * 11 10 9 31 31 H 1.08002 * 119.96577 * 179.97438 * 12 11 10 32 32 H 1.08999 * 109.47531 * 330.00156 * 14 13 12 33 33 H 1.09004 * 109.47243 * 210.00046 * 14 13 12 34 34 H 1.08993 * 109.47369 * 36.52750 * 18 17 15 35 35 H 1.09001 * 109.46681 * 156.53048 * 18 17 15 36 36 H 0.96703 * 116.99688 * 180.02562 * 21 19 18 37 37 H 1.09001 * 110.01616 * 356.13417 * 22 17 15 38 38 H 1.08995 * 110.48471 * 214.40060 * 23 22 17 39 39 H 1.09005 * 110.48475 * 337.04725 * 23 22 17 40 40 H 1.09000 * 110.71690 * 279.57177 * 24 23 22 41 41 H 1.09000 * 110.91927 * 156.29998 * 24 23 22 42 42 H 1.08993 * 110.48624 * 203.40705 * 25 24 23 43 43 H 1.09004 * 110.59519 * 80.81652 * 25 24 23 44 44 H 1.08999 * 110.03157 * 359.94624 * 26 22 17 45 45 H 1.08997 * 110.03355 * 121.38224 * 26 22 17 46 46 H 1.08000 * 119.96225 * 179.70143 * 27 13 12 47 47 H 1.08004 * 120.03164 * 180.27703 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7464 -0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0691 -3.5041 0.1159 11 6 3.4351 -3.4280 0.3547 12 6 4.1796 -4.5852 0.4722 13 6 3.5664 -5.8190 0.3517 14 6 4.3820 -7.0796 0.4798 15 6 4.4099 -7.5154 1.9222 16 8 3.8254 -6.8659 2.7632 17 7 5.0851 -8.6264 2.2775 18 6 5.8813 -9.3493 1.2826 19 6 4.9870 -10.2777 0.5019 20 8 3.8180 -10.3756 0.7912 21 8 5.4893 -10.9958 -0.5149 22 6 5.0229 -9.1111 3.6586 23 6 4.3805 -10.5131 3.6983 24 6 5.5886 -11.4836 3.7000 25 6 6.6165 -10.7496 4.5964 26 6 6.4441 -9.2612 4.2291 27 6 2.2073 -5.8980 0.1082 28 6 1.4562 -4.7446 -0.0042 29 1 -0.4849 0.8401 0.0004 30 1 3.9148 -2.4648 0.4477 31 1 5.2420 -4.5266 0.6575 32 1 5.3994 -6.8906 0.1376 33 1 3.9342 -7.8655 -0.1286 34 1 6.3474 -8.6364 0.6025 35 1 6.6543 -9.9287 1.7874 36 1 4.8770 -11.5771 -0.9863 37 1 4.4459 -8.4185 4.2714 38 1 3.7906 -10.6368 4.6064 39 1 3.7618 -10.6743 2.8154 40 1 5.9797 -11.6143 2.6910 41 1 5.3146 -12.4453 4.1340 42 1 7.6286 -11.0840 4.3687 43 1 6.3904 -10.9111 5.6505 44 1 7.1801 -8.9744 3.4780 45 1 6.5568 -8.6416 5.1187 46 1 1.7322 -6.8629 0.0098 47 1 0.3941 -4.8071 -0.1899 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833068475.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:01 Heat of formation + Delta-G solvation = -126.475911 kcal Electronic energy + Delta-G solvation = -30636.357701 eV Core-core repulsion = 26363.900668 eV Total energy + Delta-G solvation = -4272.457033 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.22167 -39.78297 -38.95005 -37.97926 -36.46689 -36.38939 -34.68757 -32.42864 -31.36861 -30.09411 -29.58019 -29.02830 -27.73734 -26.24160 -25.01571 -22.60548 -21.91896 -21.57429 -20.96909 -20.14463 -18.91343 -18.50712 -17.92985 -17.65980 -17.20011 -16.91798 -16.49949 -15.80508 -15.54997 -15.09870 -14.90290 -14.52959 -14.30797 -14.21978 -13.78026 -13.61732 -13.42346 -13.36547 -13.22564 -12.98515 -12.65155 -12.58586 -12.18827 -12.01639 -11.83033 -11.71238 -11.50732 -11.45193 -11.36045 -11.22892 -11.11917 -10.89877 -10.82006 -10.78363 -10.71591 -10.57635 -10.38472 -9.68862 -9.30878 -9.00095 -8.77142 -8.09215 -7.11371 -6.40115 -3.98649 1.80400 2.17873 2.30969 2.37710 2.73829 3.03632 3.16095 3.17832 3.20081 4.00882 4.17755 4.29795 4.43419 4.46369 4.54650 4.71532 4.77089 4.91044 5.07227 5.11320 5.14380 5.19557 5.20781 5.26252 5.30751 5.35525 5.39358 5.52575 5.54640 5.63989 5.71406 5.76474 5.88118 5.91503 5.94680 5.95079 6.20663 6.27716 6.38577 6.47716 6.75550 6.96394 7.08715 7.15314 7.29918 7.41656 7.49847 7.52855 7.89462 8.04962 8.19445 9.05383 9.76707 10.78047 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.020108 B = 0.002242 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.141951 B =12488.002291 C =13034.027343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.178 6.178 10 C 0.157 3.843 11 C -0.232 4.232 12 C -0.056 4.056 13 C -0.171 4.171 14 C -0.081 4.081 15 C 0.520 3.480 16 O -0.506 6.506 17 N -0.601 5.601 18 C 0.117 3.883 19 C 0.452 3.548 20 O -0.494 6.494 21 O -0.518 6.518 22 C 0.135 3.865 23 C -0.150 4.150 24 C -0.127 4.127 25 C -0.125 4.125 26 C -0.137 4.137 27 C -0.058 4.058 28 C -0.191 4.191 29 H 0.270 0.730 30 H 0.127 0.873 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.411 0.589 37 H 0.107 0.893 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.108 0.892 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.746 -24.304 3.074 29.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.108 0.892 9 O -0.081 6.081 10 C 0.103 3.897 11 C -0.251 4.251 12 C -0.074 4.074 13 C -0.172 4.172 14 C -0.121 4.121 15 C 0.309 3.691 16 O -0.378 6.378 17 N -0.336 5.336 18 C -0.009 4.009 19 C 0.292 3.708 20 O -0.380 6.380 21 O -0.330 6.330 22 C 0.032 3.968 23 C -0.189 4.189 24 C -0.164 4.164 25 C -0.162 4.162 26 C -0.175 4.175 27 C -0.076 4.076 28 C -0.210 4.210 29 H 0.080 0.920 30 H 0.144 0.856 31 H 0.122 0.878 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.138 0.862 35 H 0.143 0.857 36 H 0.271 0.729 37 H 0.125 0.875 38 H 0.093 0.907 39 H 0.112 0.888 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.126 0.874 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 15.897 -23.437 3.815 28.576 hybrid contribution 0.102 0.246 -0.288 0.393 sum 15.999 -23.192 3.526 28.395 Atomic orbital electron populations 1.70030 1.05955 1.27713 1.46121 1.25286 0.95837 0.98814 0.96618 0.85789 0.78695 0.79836 0.79147 1.19524 1.20308 1.19522 1.21268 0.91735 0.80900 1.52807 0.89183 1.83993 1.34274 1.11470 1.78378 1.19395 0.90385 0.87945 0.91940 1.21095 0.94335 0.98692 1.10980 1.20489 0.98106 0.91692 0.97144 1.18586 0.93934 0.92268 1.12442 1.20500 1.01386 0.97746 0.92488 1.21068 0.77221 0.79036 0.91779 1.90742 1.41987 1.52676 1.52384 1.47886 1.50465 1.26322 1.08940 1.20994 0.92628 0.95283 0.91979 1.24300 0.88519 0.79463 0.78518 1.90731 1.18263 1.63357 1.65668 1.84518 1.47794 1.55532 1.45118 1.21768 0.96595 0.96425 0.81990 1.23024 0.98086 0.93640 1.04111 1.22573 0.95929 0.98586 0.99331 1.22391 0.99131 0.94602 1.00118 1.22594 0.96383 0.97033 1.01539 1.20409 0.92788 0.96721 0.97689 1.20146 0.99819 0.90015 1.11052 0.92008 0.85566 0.87815 0.89063 0.89323 0.86151 0.85695 0.72927 0.87472 0.90720 0.88830 0.92272 0.91406 0.91507 0.91240 0.90944 0.90669 0.87443 0.86544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.90 13.67 55.48 0.76 -25.15 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.95 29.55 -169.99 -5.02 15.93 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.39 -11.22 9.44 30.89 0.29 -10.93 16 8 H 0.09 2.39 5.30 -52.49 -0.28 2.11 16 9 O -0.18 -5.26 9.76 0.06 0.00 -5.26 16 10 C 0.16 4.00 6.65 -39.11 -0.26 3.74 16 11 C -0.23 -5.29 9.13 -39.40 -0.36 -5.65 16 12 C -0.06 -1.08 9.69 -39.61 -0.38 -1.47 16 13 C -0.17 -3.11 4.38 -104.58 -0.46 -3.57 16 14 C -0.08 -1.10 4.50 -29.04 -0.13 -1.23 16 15 C 0.52 7.58 7.48 -10.98 -0.08 7.50 16 16 O -0.51 -9.78 15.39 5.56 0.09 -9.69 16 17 N -0.60 -6.34 1.93 -166.19 -0.32 -6.66 16 18 C 0.12 0.81 4.54 -5.19 -0.02 0.78 16 19 C 0.45 3.65 6.67 36.01 0.24 3.89 16 20 O -0.49 -5.77 14.40 -18.75 -0.27 -6.04 16 21 O -0.52 -2.84 13.42 -39.27 -0.53 -3.36 16 22 C 0.14 1.36 3.35 -66.81 -0.22 1.13 16 23 C -0.15 -1.39 6.02 -25.03 -0.15 -1.54 16 24 C -0.13 -0.84 6.37 -24.70 -0.16 -1.00 16 25 C -0.12 -0.72 6.83 -25.07 -0.17 -0.90 16 26 C -0.14 -0.99 5.94 -25.61 -0.15 -1.14 16 27 C -0.06 -1.13 9.69 -39.61 -0.38 -1.52 16 28 C -0.19 -4.33 9.99 -39.39 -0.39 -4.73 16 29 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.13 2.86 5.72 -52.48 -0.30 2.56 16 31 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 32 H 0.09 0.93 7.24 -51.93 -0.38 0.56 16 33 H 0.09 1.10 7.24 -51.93 -0.38 0.72 16 34 H 0.12 0.59 6.77 -51.93 -0.35 0.24 16 35 H 0.13 0.58 5.30 -51.93 -0.28 0.30 16 36 H 0.41 0.88 9.10 45.56 0.41 1.29 16 37 H 0.11 1.36 6.95 -51.93 -0.36 1.00 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 1.07 5.18 -51.93 -0.27 0.80 16 40 H 0.06 0.36 6.21 -51.93 -0.32 0.04 16 41 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.46 6.76 -51.93 -0.35 0.11 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 47 H 0.12 2.55 8.06 -52.48 -0.42 2.12 16 LS Contribution 380.59 15.07 5.74 5.74 Total: -1.00 -36.89 380.59 -7.82 -44.71 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -5.36 Total: 5.42 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -2.89 Total: -15.63 kcal Atomic # 7 Polarization: -32.24 SS G_CDS: 0.44 Total: -31.81 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.71 Total: -24.36 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.89 -7.82 -44.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833068475.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.765 kcal (2) G-P(sol) polarization free energy of solvation -36.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds