Wall clock time and date at job start Wed Apr 1 2020 04:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99776 * 2 1 4 4 H 1.48498 * 109.46942 * 240.00140 * 3 2 1 5 5 H 1.48499 * 109.46875 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47191 * 120.00182 * 3 2 1 7 7 C 1.37881 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99612 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99917 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46734 * 180.02562 * 9 7 2 11 11 C 1.34774 * 119.99858 * 269.99930 * 10 9 7 12 12 O 1.21285 * 120.00266 * 4.43081 * 11 10 9 13 13 C 1.50707 * 119.99689 * 184.43211 * 11 10 9 14 14 O 1.45200 * 109.46740 * 174.72993 * 13 11 10 15 15 C 1.34231 * 116.99591 * 180.02562 * 14 13 11 16 16 O 1.20823 * 120.00170 * 359.97438 * 15 14 13 17 17 C 1.50704 * 119.99756 * 180.02562 * 15 14 13 18 18 C 1.52997 * 109.46971 * 179.97438 * 17 15 14 19 19 O 1.42904 * 112.85319 * 53.80116 * 18 17 15 20 20 C 1.53785 * 113.61307 * 282.49382 * 18 17 15 21 21 C 1.53788 * 87.07916 * 220.01736 * 20 18 17 22 22 C 1.53778 * 87.07950 * 25.43494 * 21 20 18 23 23 C 1.39930 * 119.99689 * 90.00078 * 10 9 7 24 24 C 1.38872 * 120.06914 * 246.70733 * 23 10 9 25 25 C 1.38109 * 119.92865 * 179.97438 * 24 23 10 26 26 C 1.38280 * 120.07275 * 359.97438 * 25 24 23 27 27 C 1.38289 * 120.13927 * 0.05171 * 26 25 24 28 28 C 1.38114 * 120.06901 * 359.94782 * 27 26 25 29 29 H 0.96991 * 120.00637 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.46888 * 60.00160 * 9 7 2 31 31 H 1.09001 * 109.46851 * 299.99645 * 9 7 2 32 32 H 1.08998 * 109.47306 * 294.73002 * 13 11 10 33 33 H 1.08998 * 109.46760 * 54.73284 * 13 11 10 34 34 H 1.09000 * 109.46902 * 299.99547 * 17 15 14 35 35 H 1.08999 * 109.47269 * 59.99607 * 17 15 14 36 36 H 0.96704 * 113.99557 * 309.66606 * 19 18 17 37 37 H 1.08993 * 113.61502 * 334.56992 * 20 18 17 38 38 H 1.09007 * 113.60994 * 105.47555 * 20 18 17 39 39 H 1.08992 * 113.61648 * 270.88026 * 21 20 18 40 40 H 1.08997 * 113.68435 * 139.99304 * 21 20 18 41 41 H 1.08999 * 113.61124 * 220.01733 * 22 21 20 42 42 H 1.09001 * 113.61456 * 89.11153 * 22 21 20 43 43 H 1.07999 * 120.03703 * 359.70435 * 24 23 10 44 44 H 1.07998 * 119.96629 * 179.97438 * 25 24 23 45 45 H 1.07997 * 119.93383 * 180.02562 * 26 25 24 46 46 H 1.07997 * 119.96184 * 179.97438 * 27 26 25 47 47 H 1.08001 * 120.03326 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.6411 -4.1248 -1.1677 12 8 2.3105 -3.6132 -2.2165 13 6 3.5417 -5.3332 -1.1696 14 8 3.7713 -5.7634 -2.5373 15 6 4.5585 -6.8362 -2.7146 16 8 5.0400 -7.3968 -1.7587 17 6 4.8425 -7.3406 -4.1060 18 6 5.7589 -8.5633 -4.0280 19 8 5.2496 -9.5846 -3.1678 20 6 7.2330 -8.2125 -3.7653 21 6 7.5935 -9.3160 -4.7740 22 6 6.2095 -9.0841 -5.4029 23 6 2.6579 -4.1443 1.2113 24 6 3.9904 -4.0041 1.5764 25 6 4.4359 -4.5296 2.7734 26 6 3.5566 -5.1943 3.6083 27 6 2.2291 -5.3361 3.2475 28 6 1.7774 -4.8128 2.0518 29 1 -0.4850 0.8399 0.0004 30 1 0.6242 -2.5567 -0.8903 31 1 0.6249 -2.5571 0.8897 32 1 4.4937 -5.0776 -0.7045 33 1 3.0686 -6.1397 -0.6096 34 1 3.9061 -7.6182 -4.5900 35 1 5.3317 -6.5566 -4.6839 36 1 4.9863 -9.2669 -2.2932 37 1 7.5092 -7.2114 -4.0960 38 1 7.5584 -8.4281 -2.7475 39 1 7.7080 -10.3009 -4.3213 40 1 8.4217 -9.0539 -5.4323 41 1 5.7087 -10.0032 -5.7072 42 1 6.2060 -8.3212 -6.1814 43 1 4.6786 -3.4886 0.9229 44 1 5.4721 -4.4213 3.0577 45 1 3.9073 -5.6040 4.5440 46 1 1.5450 -5.8561 3.9015 47 1 0.7405 -4.9235 1.7707 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838216461.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:24 Heat of formation + Delta-G solvation = -112.580387 kcal Electronic energy + Delta-G solvation = -30522.964018 eV Core-core repulsion = 26251.109541 eV Total energy + Delta-G solvation = -4271.854478 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.11571 -40.06408 -39.33517 -38.15557 -36.51084 -34.94934 -34.69434 -32.79026 -31.25007 -30.79248 -29.55484 -28.95759 -26.68332 -26.04610 -24.12498 -23.02801 -22.57237 -22.13334 -21.09639 -19.94454 -19.27957 -17.96208 -17.57959 -16.96846 -16.66175 -16.52554 -16.28093 -16.00486 -15.51780 -15.40314 -15.09671 -14.97059 -14.45041 -14.32092 -14.20788 -13.56725 -13.42367 -13.23113 -13.13781 -12.75086 -12.71245 -12.44117 -12.35344 -12.19935 -11.90546 -11.55745 -11.53283 -11.29152 -11.16644 -11.14245 -10.96326 -10.91760 -10.78405 -10.69172 -10.39810 -10.23933 -9.97006 -9.84303 -9.47830 -8.77169 -8.70288 -8.50047 -7.80980 -6.12136 -4.16972 1.45969 1.56303 1.93685 2.28148 3.02448 3.28796 3.32672 3.35813 3.62462 3.78556 3.93500 4.19033 4.25408 4.34985 4.39257 4.53011 4.68030 4.77741 4.97310 5.06393 5.09579 5.10943 5.15856 5.20894 5.23250 5.28191 5.32553 5.35949 5.45356 5.59521 5.62813 5.73520 5.77541 5.88570 5.92773 6.03878 6.17516 6.22111 6.51891 6.65515 6.68167 6.84872 7.10156 7.22225 7.32337 7.40869 7.60941 7.82377 8.09442 8.13953 8.65992 8.86270 9.47568 10.96345 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011444 B = 0.002819 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.086037 B = 9931.134329 C =11380.598349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.064 3.936 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.250 3.750 10 N -0.555 5.555 11 C 0.514 3.486 12 O -0.502 6.502 13 C 0.050 3.950 14 O -0.326 6.326 15 C 0.467 3.533 16 O -0.514 6.514 17 C -0.137 4.137 18 C 0.122 3.878 19 O -0.546 6.546 20 C -0.165 4.165 21 C -0.134 4.134 22 C -0.125 4.125 23 C 0.153 3.847 24 C -0.127 4.127 25 C -0.107 4.107 26 C -0.131 4.131 27 C -0.108 4.108 28 C -0.123 4.123 29 H 0.265 0.735 30 H 0.049 0.951 31 H 0.039 0.961 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.389 0.611 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.123 0.877 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.434 -17.606 -2.116 21.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.076 0.924 9 C 0.133 3.867 10 N -0.284 5.284 11 C 0.299 3.701 12 O -0.376 6.376 13 C -0.027 4.027 14 O -0.241 6.241 15 C 0.311 3.689 16 O -0.405 6.405 17 C -0.175 4.175 18 C 0.080 3.920 19 O -0.358 6.358 20 C -0.202 4.202 21 C -0.171 4.171 22 C -0.162 4.162 23 C 0.061 3.939 24 C -0.146 4.146 25 C -0.126 4.126 26 C -0.150 4.150 27 C -0.127 4.127 28 C -0.142 4.142 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.118 0.882 33 H 0.115 0.885 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.243 0.757 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.115 0.885 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.141 0.859 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 11.276 -17.659 -2.938 21.157 hybrid contribution 0.299 1.535 0.865 1.787 sum 11.574 -16.124 -2.073 19.956 Atomic orbital electron populations 1.69905 1.05988 1.27347 1.50010 1.24905 0.94906 0.99231 0.94843 0.86525 0.79544 0.82507 0.78703 1.20068 1.21070 1.20179 1.21298 0.93362 0.90349 1.51686 0.92374 1.19498 0.86845 0.81358 0.98950 1.45896 1.45858 1.34791 1.01899 1.19736 0.81597 0.84290 0.84463 1.90743 1.55939 1.60521 1.30376 1.22950 1.01483 0.97446 0.80862 1.86566 1.62212 1.44211 1.31091 1.23806 0.74852 0.77654 0.92554 1.90522 1.49516 1.57135 1.43287 1.22165 1.04032 0.99528 0.91772 1.21964 0.90993 0.86124 0.92901 1.86368 1.84582 1.35250 1.29608 1.23634 0.96195 0.99422 1.00994 1.22734 0.96650 0.99532 0.98231 1.23057 0.96625 1.02280 0.94264 1.17791 0.92622 0.95154 0.88302 1.21365 0.95585 1.00175 0.97522 1.20978 0.99651 0.97972 0.93978 1.21095 0.93717 1.00445 0.99695 1.20994 0.95805 0.99793 0.96081 1.21314 1.00088 0.97792 0.95036 0.92505 0.93321 0.94283 0.88247 0.88503 0.86511 0.86172 0.75714 0.89486 0.90405 0.89750 0.91192 0.90204 0.88519 0.85929 0.85983 0.86220 0.85914 0.85579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.53 -14.78 9.39 -34.44 -0.32 -15.11 16 8 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 9 C 0.25 6.42 5.07 -5.19 -0.03 6.39 16 10 N -0.55 -11.70 2.51 -114.73 -0.29 -11.99 16 11 C 0.51 10.66 7.62 -10.98 -0.08 10.58 16 12 O -0.50 -12.49 16.14 -14.05 -0.23 -12.71 16 13 C 0.05 0.80 4.61 36.01 0.17 0.97 16 14 O -0.33 -5.11 9.76 -45.89 -0.45 -5.56 16 15 C 0.47 5.95 7.72 36.01 0.28 6.23 16 16 O -0.51 -7.01 13.34 -25.44 -0.34 -7.35 16 17 C -0.14 -1.28 5.45 -27.88 -0.15 -1.43 16 18 C 0.12 1.16 1.10 -89.81 -0.10 1.06 16 19 O -0.55 -6.37 13.39 -55.04 -0.74 -7.10 16 20 C -0.16 -1.47 7.17 -25.91 -0.19 -1.65 16 21 C -0.13 -1.03 8.02 -25.92 -0.21 -1.24 16 22 C -0.13 -0.94 7.47 -25.92 -0.19 -1.13 16 23 C 0.15 2.71 4.43 -83.69 -0.37 2.34 16 24 C -0.13 -2.00 8.45 -39.39 -0.33 -2.33 16 25 C -0.11 -1.39 10.04 -39.61 -0.40 -1.79 16 26 C -0.13 -1.58 10.04 -39.55 -0.40 -1.98 16 27 C -0.11 -1.38 10.04 -39.61 -0.40 -1.78 16 28 C -0.12 -1.90 9.64 -39.39 -0.38 -2.28 16 29 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 30 H 0.05 1.38 7.49 -51.93 -0.39 0.99 16 31 H 0.04 1.02 7.82 -51.93 -0.41 0.61 16 32 H 0.10 1.47 6.96 -51.93 -0.36 1.11 16 33 H 0.10 1.41 8.02 -51.93 -0.42 0.99 16 34 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.12 0.90 8.05 -51.93 -0.42 0.48 16 36 H 0.39 4.49 6.20 45.56 0.28 4.77 16 37 H 0.09 0.68 8.03 -51.93 -0.42 0.27 16 38 H 0.08 0.79 8.14 -51.92 -0.42 0.36 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.10 0.54 8.10 -51.93 -0.42 0.12 16 43 H 0.12 1.92 7.89 -52.49 -0.41 1.51 16 44 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 45 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 46 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 47 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 398.62 15.07 6.01 6.01 Total: -1.00 -33.46 398.62 -9.83 -43.29 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.31 Total: 5.60 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -3.20 Total: -1.45 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.45 Total: -37.39 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -1.75 Total: -32.73 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.46 -9.83 -43.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838216461.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.295 kcal (2) G-P(sol) polarization free energy of solvation -33.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds