Wall clock time and date at job start Wed Apr 1 2020 04:12:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.42904 * 114.00146 * 2 1
4 4 C 1.52999 * 109.46955 * 180.02562 * 3 2 1
5 5 N 1.46501 * 109.47326 * 65.00245 * 4 3 2
6 6 C 1.36938 * 119.99686 * 271.73083 * 5 4 3
7 7 H 1.07998 * 120.00124 * 145.64219 * 6 5 4
8 8 C 1.38806 * 120.00023 * 325.64344 * 6 5 4
9 9 N 1.31622 * 120.00082 * 336.45669 * 8 6 5
10 10 Si 1.86801 * 120.00051 * 156.45353 * 8 6 5
11 11 H 1.48505 * 109.46899 * 60.00001 * 10 8 6
12 12 H 1.48503 * 109.47249 * 179.97438 * 10 8 6
13 13 H 1.48500 * 109.47382 * 299.99990 * 10 8 6
14 14 C 1.46498 * 119.99983 * 91.73380 * 5 4 3
15 15 N 1.46499 * 109.46890 * 269.99768 * 14 5 4
16 16 C 1.35054 * 125.93194 * 95.00365 * 15 14 5
17 17 C 1.35066 * 107.98892 * 179.70216 * 16 15 14
18 18 N 1.48018 * 126.07573 * 180.26107 * 17 16 15
19 19 O 1.21803 * 120.00161 * 6.07668 * 18 17 16
20 20 O 1.21804 * 119.99826 * 186.08217 * 18 17 16
21 21 C 1.40867 * 107.84693 * 0.43194 * 17 16 15
22 22 C 1.48375 * 126.03796 * 179.82692 * 21 17 16
23 23 C 1.39772 * 120.90311 * 224.23353 * 22 21 17
24 24 C 1.37962 * 119.01928 * 180.02562 * 23 22 21
25 25 N 1.31934 * 120.88414 * 359.97438 * 24 23 22
26 26 C 1.31933 * 122.00052 * 0.02562 * 25 24 23
27 27 C 1.37967 * 120.88389 * 359.97438 * 26 25 24
28 28 N 1.31641 * 107.92183 * 359.56655 * 21 17 16
29 29 H 1.09001 * 109.47231 * 300.00249 * 1 2 3
30 30 H 1.09001 * 109.47347 * 59.99839 * 1 2 3
31 31 H 1.08999 * 109.47263 * 180.02562 * 1 2 3
32 32 H 1.08995 * 109.47222 * 60.00002 * 3 2 1
33 33 H 1.09005 * 109.46947 * 300.00362 * 3 2 1
34 34 H 1.08995 * 109.47043 * 304.99193 * 4 3 2
35 35 H 1.09009 * 109.46405 * 185.00052 * 4 3 2
36 36 H 0.97006 * 120.00246 * 180.02562 * 9 8 6
37 37 H 1.08997 * 109.47055 * 150.00106 * 14 5 4
38 38 H 1.09001 * 109.47469 * 29.99673 * 14 5 4
39 39 H 1.08000 * 126.00328 * 359.97438 * 16 15 14
40 40 H 1.08003 * 120.48593 * 359.97438 * 23 22 21
41 41 H 1.08000 * 119.55381 * 179.97438 * 24 23 22
42 42 H 1.08001 * 119.55814 * 180.02562 * 26 25 24
43 43 H 1.07996 * 120.49138 * 180.02562 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3055 0.0000
4 6 3.5355 1.1846 -0.0006
5 7 3.9757 0.5644 -1.2528
6 6 4.0627 -0.7989 -1.3479
7 1 3.8359 -1.2906 -2.2824
8 6 4.4423 -1.5489 -0.2434
9 7 5.1469 -0.9927 0.7192
10 14 3.9531 -3.3477 -0.1229
11 1 4.5207 -4.0932 -1.2751
12 1 4.4778 -3.9198 1.1431
13 1 2.4725 -3.4604 -0.1414
14 6 4.3229 1.4027 -2.4029
15 7 3.1286 1.6288 -3.2206
16 6 2.3049 2.6963 -3.1422
17 6 1.3286 2.5382 -4.0620
18 7 0.2153 3.4785 -4.3218
19 8 0.1831 4.5559 -3.7545
20 8 -0.6687 3.1747 -5.1027
21 6 1.5559 1.3176 -4.7275
22 6 0.7213 0.7468 -5.8133
23 6 0.3726 -0.6068 -5.8147
24 6 -0.4047 -1.0967 -6.8438
25 7 -0.8175 -0.3062 -7.8161
26 6 -0.5108 0.9765 -7.8522
27 6 0.2623 1.5479 -6.8627
28 7 2.6428 0.7757 -4.2197
29 1 -0.3634 0.5139 0.8900
30 1 -0.3634 0.5139 -0.8900
31 1 -0.3634 -1.0276 0.0005
32 1 1.6887 1.8464 0.8899
33 1 1.6886 1.8464 -0.8900
34 1 3.8514 0.5683 0.8410
35 1 3.9785 2.1766 0.0889
36 1 5.4125 -1.5169 1.4910
37 1 5.0834 0.9013 -3.0015
38 1 4.7093 2.3595 -2.0518
39 1 2.4111 3.5317 -2.4661
40 1 0.7075 -1.2596 -5.0221
41 1 -0.6788 -2.1412 -6.8537
42 1 -0.8705 1.5876 -8.6669
43 1 0.5092 2.5987 -6.8983
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000840153657.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:12:38
Heat of formation + Delta-G solvation = 99.146792 kcal
Electronic energy + Delta-G solvation = -31450.382482 eV
Core-core repulsion = 27116.461591 eV
Total energy + Delta-G solvation = -4333.920890 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.143 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-42.11435 -40.96721 -39.83101 -37.57879 -36.25648 -35.92926 -33.78711 -32.08495
-31.34785 -31.03186 -30.62166 -29.17111 -26.61518 -25.94466 -25.42875 -24.05245
-23.45595 -22.93488 -21.38475 -20.95089 -20.48782 -18.75272 -18.24679 -17.40101
-17.28656 -16.70158 -16.21005 -16.09673 -15.92946 -15.55186 -15.25715 -15.17645
-14.61470 -14.33017 -14.17358 -13.83718 -13.75063 -13.62576 -13.40569 -13.05514
-12.34822 -12.01572 -11.79880 -11.69835 -11.45696 -11.28722 -11.20788 -11.09571
-11.02245 -10.85359 -10.78049 -10.60168 -10.34258 -10.18458 -10.11745 -9.52650
-9.34469 -9.15739 -9.08223 -8.99720 -8.85971 -7.35152 -6.23657 -3.77155
0.47409 1.00313 1.20900 1.59264 1.88451 2.54445 2.60575 3.24181
3.28641 3.35999 3.84806 4.08219 4.17925 4.35366 4.39347 4.47931
4.81634 4.82511 4.93192 5.02302 5.07406 5.10470 5.18726 5.41912
5.54106 5.60410 5.61133 5.68656 5.79264 5.81305 5.84373 5.87898
5.94401 6.07515 6.08868 6.14309 6.26569 6.65756 6.67362 6.84355
7.17666 7.39941 7.51008 7.72614 7.97138 8.00157 8.02358 8.66604
9.29491 9.71065 10.79841
Molecular weight = 347.14amu
Principal moments of inertia in cm(-1)
A = 0.011358 B = 0.004097 C = 0.003549
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2464.678950 B = 6833.095071 C = 7888.415857
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.352 6.352
3 C 0.047 3.953
4 C 0.120 3.880
5 N -0.527 5.527
6 C -0.274 4.274
7 H 0.073 0.927
8 C 0.038 3.962
9 N -0.878 5.878
10 Si 0.908 3.092
11 H -0.279 1.279
12 H -0.289 1.289
13 H -0.276 1.276
14 C 0.325 3.675
15 N -0.316 5.316
16 C 0.142 3.858
17 C -0.194 4.194
18 N 0.076 4.924
19 O -0.193 6.193
20 O -0.176 6.176
21 C 0.143 3.857
22 C 0.023 3.977
23 C -0.137 4.137
24 C 0.093 3.907
25 N -0.481 5.481
26 C 0.096 3.904
27 C -0.115 4.115
28 N -0.235 5.235
29 H 0.030 0.970
30 H 0.027 0.973
31 H 0.077 0.923
32 H 0.033 0.967
33 H 0.024 0.976
34 H 0.121 0.879
35 H 0.052 0.948
36 H 0.262 0.738
37 H 0.106 0.894
38 H 0.095 0.905
39 H 0.192 0.808
40 H 0.140 0.860
41 H 0.158 0.842
42 H 0.159 0.841
43 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.228 6.258 -6.740 10.580
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.270 6.270
3 C -0.032 4.032
4 C -0.005 4.005
5 N -0.241 5.241
6 C -0.402 4.402
7 H 0.091 0.909
8 C -0.165 4.165
9 N -0.518 5.518
10 Si 0.736 3.264
11 H -0.205 1.205
12 H -0.215 1.215
13 H -0.202 1.202
14 C 0.118 3.882
15 N -0.104 5.104
16 C -0.016 4.016
17 C -0.294 4.294
18 N 0.588 4.412
19 O -0.401 6.401
20 O -0.387 6.387
21 C -0.025 4.025
22 C 0.013 3.987
23 C -0.157 4.157
24 C -0.064 4.064
25 N -0.190 5.190
26 C -0.061 4.061
27 C -0.137 4.137
28 N -0.057 5.057
29 H 0.048 0.952
30 H 0.045 0.955
31 H 0.096 0.904
32 H 0.051 0.949
33 H 0.042 0.958
34 H 0.138 0.862
35 H 0.070 0.930
36 H 0.072 0.928
37 H 0.124 0.876
38 H 0.112 0.888
39 H 0.209 0.791
40 H 0.158 0.842
41 H 0.175 0.825
42 H 0.176 0.824
43 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges -3.928 4.162 -6.891 8.957
hybrid contribution -0.998 0.803 1.111 1.696
sum -4.926 4.966 -5.780 9.073
Atomic orbital electron populations
1.22637 0.83635 1.01802 0.98537 1.88208 1.17021 1.26937 1.94845
1.23317 0.97733 0.84833 0.97354 1.21521 0.88458 0.97491 0.93033
1.44519 1.68762 1.04049 1.06764 1.18978 1.42391 0.80019 0.98829
0.90934 1.25012 0.95260 0.98875 0.97319 1.69928 1.33688 1.37398
1.10789 0.86298 0.79308 0.83611 0.77134 1.20511 1.21484 1.20196
1.21903 0.81981 0.97145 0.87150 1.53430 1.20990 1.11374 1.24574
1.22422 0.89031 0.94500 0.95664 1.21058 0.98502 0.97570 1.12222
1.42570 1.00339 1.00124 0.98195 1.94500 1.83768 1.10294 1.51504
1.94512 1.30867 1.81749 1.31605 1.20359 0.94978 0.90783 0.96394
1.18038 0.95204 0.93557 0.91935 1.22237 0.98496 0.94620 1.00396
1.22633 0.94297 0.99834 0.89597 1.67614 1.20689 1.05545 1.25165
1.22592 0.94779 0.91136 0.97581 1.22051 0.97521 1.00516 0.93572
1.78024 1.09776 1.14981 1.02892 0.95151 0.95468 0.90403 0.94931
0.95788 0.86216 0.93016 0.92775 0.87561 0.88769 0.79114 0.84235
0.82452 0.82407 0.84962
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.52 11.01 101.05 1.11 1.64 16
2 O -0.35 -7.34 10.09 -35.23 -0.36 -7.70 16
3 C 0.05 0.84 6.28 37.16 0.23 1.08 16
4 C 0.12 2.32 5.79 -4.04 -0.02 2.29 16
5 N -0.53 -10.73 2.68 -176.95 -0.47 -11.21 16
6 C -0.27 -6.54 8.89 -15.06 -0.13 -6.67 16
7 H 0.07 1.84 7.93 -52.49 -0.42 1.42 16
8 C 0.04 0.94 4.95 -17.43 -0.09 0.85 16
9 N -0.88 -22.19 11.36 55.49 0.63 -21.56 16
10 Si 0.91 20.50 29.61 -169.99 -5.03 15.47 16
11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16
12 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16
13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
14 C 0.32 5.29 7.01 -63.75 -0.45 4.85 16
15 N -0.32 -5.13 3.85 -64.60 -0.25 -5.37 16
16 C 0.14 2.08 9.37 -17.26 -0.16 1.92 16
17 C -0.19 -3.15 7.07 -80.08 -0.57 -3.72 16
18 N 0.08 1.27 4.45 33.90 0.15 1.42 16
19 O -0.19 -3.22 19.03 -29.46 -0.56 -3.78 16
20 O -0.18 -2.97 15.20 -29.46 -0.45 -3.41 16
21 C 0.14 2.40 6.71 -82.78 -0.56 1.85 16
22 C 0.02 0.35 5.45 -104.58 -0.57 -0.22 16
23 C -0.14 -1.95 9.89 -39.11 -0.39 -2.34 16
24 C 0.09 1.19 11.17 -17.61 -0.20 1.00 16
25 N -0.48 -6.52 10.35 -13.34 -0.14 -6.66 16
26 C 0.10 1.19 11.17 -17.61 -0.20 0.99 16
27 C -0.12 -1.57 7.66 -39.11 -0.30 -1.87 16
28 N -0.23 -4.20 12.61 33.42 0.42 -3.78 16
29 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16
30 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16
31 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16
32 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16
33 H 0.02 0.42 6.26 -51.93 -0.33 0.09 16
34 H 0.12 2.74 5.36 -51.93 -0.28 2.47 16
35 H 0.05 0.84 7.87 -51.92 -0.41 0.43 16
36 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16
37 H 0.11 1.77 8.04 -51.93 -0.42 1.35 16
38 H 0.09 1.21 7.86 -51.93 -0.41 0.80 16
39 H 0.19 2.18 8.06 -52.49 -0.42 1.76 16
40 H 0.14 2.00 8.06 -52.48 -0.42 1.57 16
41 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16
42 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16
43 H 0.13 1.73 7.01 -52.49 -0.37 1.36 16
LS Contribution 376.45 15.07 5.67 5.67
Total: -1.00 -28.91 376.45 -7.80 -36.71
By element:
Atomic # 1 Polarization: 7.71 SS G_CDS: -5.14 Total: 2.57 kcal
Atomic # 6 Polarization: 3.92 SS G_CDS: -2.28 Total: 1.64 kcal
Atomic # 7 Polarization: -47.51 SS G_CDS: 0.34 Total: -47.16 kcal
Atomic # 8 Polarization: -13.53 SS G_CDS: -1.36 Total: -14.89 kcal
Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.47 kcal
Total LS contribution 5.67 Total: 5.67 kcal
Total: -28.91 -7.80 -36.71 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000840153657.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 135.854 kcal
(2) G-P(sol) polarization free energy of solvation -28.906 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.948 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.707 kcal
(6) G-S(sol) free energy of system = (1) + (5) 99.147 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds