Wall clock time and date at job start Wed Apr 1 2020 04:12:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.42904 * 114.00146 * 2 1
4 4 C 1.52999 * 109.46955 * 180.02562 * 3 2 1
5 5 N 1.46501 * 109.47326 * 65.00245 * 4 3 2
6 6 C 1.36938 * 119.99686 * 271.73083 * 5 4 3
7 7 H 1.07998 * 120.00124 * 145.64219 * 6 5 4
8 8 C 1.38806 * 120.00023 * 325.64344 * 6 5 4
9 9 N 1.31622 * 120.00082 * 336.45669 * 8 6 5
10 10 Si 1.86801 * 120.00051 * 156.45353 * 8 6 5
11 11 H 1.48505 * 109.46899 * 60.00001 * 10 8 6
12 12 H 1.48503 * 109.47249 * 179.97438 * 10 8 6
13 13 H 1.48500 * 109.47382 * 299.99990 * 10 8 6
14 14 C 1.46498 * 119.99983 * 91.73380 * 5 4 3
15 15 N 1.46499 * 109.46890 * 269.99768 * 14 5 4
16 16 C 1.35054 * 125.93194 * 95.00365 * 15 14 5
17 17 C 1.35066 * 107.98892 * 179.70216 * 16 15 14
18 18 N 1.48018 * 126.07573 * 180.26107 * 17 16 15
19 19 O 1.21803 * 120.00161 * 6.07668 * 18 17 16
20 20 O 1.21804 * 119.99826 * 186.08217 * 18 17 16
21 21 C 1.40867 * 107.84693 * 0.43194 * 17 16 15
22 22 C 1.48375 * 126.03796 * 179.82692 * 21 17 16
23 23 C 1.39772 * 120.90311 * 224.23353 * 22 21 17
24 24 C 1.37962 * 119.01928 * 180.02562 * 23 22 21
25 25 N 1.31934 * 120.88414 * 359.97438 * 24 23 22
26 26 C 1.31933 * 122.00052 * 0.02562 * 25 24 23
27 27 C 1.37967 * 120.88389 * 359.97438 * 26 25 24
28 28 N 1.31641 * 107.92183 * 359.56655 * 21 17 16
29 29 H 1.09001 * 109.47231 * 300.00249 * 1 2 3
30 30 H 1.09001 * 109.47347 * 59.99839 * 1 2 3
31 31 H 1.08999 * 109.47263 * 180.02562 * 1 2 3
32 32 H 1.08995 * 109.47222 * 60.00002 * 3 2 1
33 33 H 1.09005 * 109.46947 * 300.00362 * 3 2 1
34 34 H 1.08995 * 109.47043 * 304.99193 * 4 3 2
35 35 H 1.09009 * 109.46405 * 185.00052 * 4 3 2
36 36 H 0.97006 * 120.00246 * 180.02562 * 9 8 6
37 37 H 1.08997 * 109.47055 * 150.00106 * 14 5 4
38 38 H 1.09001 * 109.47469 * 29.99673 * 14 5 4
39 39 H 1.08000 * 126.00328 * 359.97438 * 16 15 14
40 40 H 1.08003 * 120.48593 * 359.97438 * 23 22 21
41 41 H 1.08000 * 119.55381 * 179.97438 * 24 23 22
42 42 H 1.08001 * 119.55814 * 180.02562 * 26 25 24
43 43 H 1.07996 * 120.49138 * 180.02562 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3055 0.0000
4 6 3.5355 1.1846 -0.0006
5 7 3.9757 0.5644 -1.2528
6 6 4.0627 -0.7989 -1.3479
7 1 3.8359 -1.2906 -2.2824
8 6 4.4423 -1.5489 -0.2434
9 7 5.1469 -0.9927 0.7192
10 14 3.9531 -3.3477 -0.1229
11 1 4.5207 -4.0932 -1.2751
12 1 4.4778 -3.9198 1.1431
13 1 2.4725 -3.4604 -0.1414
14 6 4.3229 1.4027 -2.4029
15 7 3.1286 1.6288 -3.2206
16 6 2.3049 2.6963 -3.1422
17 6 1.3286 2.5382 -4.0620
18 7 0.2153 3.4785 -4.3218
19 8 0.1831 4.5559 -3.7545
20 8 -0.6687 3.1747 -5.1027
21 6 1.5559 1.3176 -4.7275
22 6 0.7213 0.7468 -5.8133
23 6 0.3726 -0.6068 -5.8147
24 6 -0.4047 -1.0967 -6.8438
25 7 -0.8175 -0.3062 -7.8161
26 6 -0.5108 0.9765 -7.8522
27 6 0.2623 1.5479 -6.8627
28 7 2.6428 0.7757 -4.2197
29 1 -0.3634 0.5139 0.8900
30 1 -0.3634 0.5139 -0.8900
31 1 -0.3634 -1.0276 0.0005
32 1 1.6887 1.8464 0.8899
33 1 1.6886 1.8464 -0.8900
34 1 3.8514 0.5683 0.8410
35 1 3.9785 2.1766 0.0889
36 1 5.4125 -1.5169 1.4910
37 1 5.0834 0.9013 -3.0015
38 1 4.7093 2.3595 -2.0518
39 1 2.4111 3.5317 -2.4661
40 1 0.7075 -1.2596 -5.0221
41 1 -0.6788 -2.1412 -6.8537
42 1 -0.8705 1.5876 -8.6669
43 1 0.5092 2.5987 -6.8983
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000840153657.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:12:37
Heat of formation + Delta-G solvation = 83.069249 kcal
Electronic energy + Delta-G solvation = -31451.079656 eV
Core-core repulsion = 27116.461591 eV
Total energy + Delta-G solvation = -4334.618065 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.143 amu
Computer time = 1.04 seconds
Orbital eigenvalues (eV)
-43.39788 -42.25861 -40.89309 -39.03768 -37.56157 -37.41162 -35.07528 -33.61554
-32.57386 -32.23876 -31.89688 -30.59488 -28.04244 -27.36257 -26.72370 -25.47915
-24.51435 -24.24781 -22.72090 -22.31860 -21.75661 -20.00280 -19.54134 -18.98451
-18.61012 -17.88198 -17.67601 -17.24048 -17.16928 -16.84986 -16.65403 -16.52005
-16.13157 -15.78155 -15.45736 -15.24573 -15.06619 -14.64834 -14.63863 -14.21671
-13.72341 -13.58225 -13.17403 -12.92222 -12.87352 -12.78195 -12.71940 -12.54294
-12.47774 -12.23620 -12.14489 -12.09732 -12.00420 -11.74363 -11.40215 -10.74160
-10.63478 -10.57566 -10.48928 -10.22104 -10.09377 -9.01829 -8.03998 -5.58095
-0.78698 -0.15994 0.17568 0.31656 0.64016 1.28304 1.33013 1.43965
1.45672 1.52034 2.42342 2.78575 2.90843 3.02612 3.12644 3.22879
3.38672 3.53915 3.69399 3.80146 3.93865 4.00265 4.12191 4.21690
4.24459 4.32251 4.42403 4.46043 4.51910 4.56751 4.58669 4.63543
4.69695 4.75907 4.83459 4.95101 5.18083 5.36197 5.55169 5.59991
5.65732 5.69031 6.10209 6.23812 6.47789 6.70009 6.94397 6.95475
7.58462 7.99010 8.96270
Molecular weight = 347.14amu
Principal moments of inertia in cm(-1)
A = 0.011358 B = 0.004097 C = 0.003549
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2464.678950 B = 6833.095071 C = 7888.415857
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.393 6.393
3 C 0.050 3.950
4 C 0.122 3.878
5 N -0.549 5.549
6 C -0.262 4.262
7 H 0.048 0.952
8 C 0.003 3.997
9 N -0.897 5.897
10 Si 0.940 3.060
11 H -0.279 1.279
12 H -0.289 1.289
13 H -0.290 1.290
14 C 0.335 3.665
15 N -0.322 5.322
16 C 0.162 3.838
17 C -0.208 4.208
18 N 0.078 4.922
19 O -0.187 6.187
20 O -0.187 6.187
21 C 0.145 3.855
22 C 0.000 4.000
23 C -0.149 4.149
24 C 0.097 3.903
25 N -0.492 5.492
26 C 0.101 3.899
27 C -0.117 4.117
28 N -0.268 5.268
29 H 0.053 0.947
30 H 0.025 0.975
31 H 0.079 0.921
32 H 0.053 0.947
33 H 0.031 0.969
34 H 0.084 0.916
35 H 0.085 0.915
36 H 0.256 0.744
37 H 0.097 0.903
38 H 0.140 0.860
39 H 0.230 0.770
40 H 0.131 0.869
41 H 0.185 0.815
42 H 0.191 0.809
43 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.074 8.156 -7.533 12.655
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.312 6.312
3 C -0.029 4.029
4 C -0.003 4.003
5 N -0.264 5.264
6 C -0.392 4.392
7 H 0.066 0.934
8 C -0.197 4.197
9 N -0.539 5.539
10 Si 0.770 3.230
11 H -0.205 1.205
12 H -0.215 1.215
13 H -0.217 1.217
14 C 0.129 3.871
15 N -0.108 5.108
16 C 0.004 3.996
17 C -0.307 4.307
18 N 0.589 4.411
19 O -0.397 6.397
20 O -0.396 6.396
21 C -0.024 4.024
22 C -0.010 4.010
23 C -0.170 4.170
24 C -0.059 4.059
25 N -0.201 5.201
26 C -0.055 4.055
27 C -0.139 4.139
28 N -0.090 5.090
29 H 0.071 0.929
30 H 0.044 0.956
31 H 0.098 0.902
32 H 0.071 0.929
33 H 0.049 0.951
34 H 0.102 0.898
35 H 0.104 0.896
36 H 0.066 0.934
37 H 0.115 0.885
38 H 0.158 0.842
39 H 0.247 0.753
40 H 0.149 0.851
41 H 0.201 0.799
42 H 0.208 0.792
43 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges -4.797 6.057 -7.731 10.930
hybrid contribution -0.850 0.329 1.193 1.502
sum -5.647 6.386 -6.538 10.743
Atomic orbital electron populations
1.22723 0.81965 1.02365 0.99491 1.88155 1.19069 1.28819 1.95124
1.23333 0.96921 0.84085 0.98540 1.21464 0.89375 0.98195 0.91312
1.44489 1.70508 1.03137 1.08292 1.18785 1.40705 0.82149 0.97561
0.93391 1.25302 0.96277 1.00285 0.97832 1.69996 1.35315 1.37532
1.11077 0.85796 0.78006 0.82367 0.76863 1.20512 1.21537 1.21698
1.22132 0.81010 0.98628 0.85323 1.52600 1.21602 1.11871 1.24717
1.22896 0.87424 0.94244 0.94999 1.21139 0.99008 0.97632 1.12947
1.42547 1.00325 1.00106 0.98130 1.94489 1.83669 1.10246 1.51254
1.94516 1.31151 1.81908 1.32066 1.20648 0.94512 0.90894 0.96316
1.18253 0.95943 0.94308 0.92466 1.22262 0.99437 0.94344 1.00957
1.23025 0.93203 1.01002 0.88681 1.67724 1.20996 1.06098 1.25312
1.23119 0.93549 0.91075 0.97788 1.22140 0.97692 1.00583 0.93443
1.78004 1.10878 1.16084 1.04049 0.92872 0.95610 0.90221 0.92853
0.95092 0.89814 0.89644 0.93446 0.88498 0.84245 0.75319 0.85091
0.79855 0.79185 0.84549
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 19.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 1.02 11.01 113.37 1.25 2.26 16
2 O -0.39 -16.14 10.09 -148.98 -1.50 -17.65 16
3 C 0.05 1.70 6.28 71.98 0.45 2.15 16
4 C 0.12 4.49 5.79 86.38 0.50 4.99 16
5 N -0.55 -21.80 2.68 -713.75 -1.91 -23.71 16
6 C -0.26 -12.69 8.89 84.03 0.75 -11.95 16
7 H 0.05 2.51 7.93 -2.91 -0.02 2.49 16
8 C 0.00 0.14 4.95 84.86 0.42 0.56 16
9 N -0.90 -46.05 11.36 21.65 0.25 -45.81 16
10 Si 0.94 43.05 29.61 68.60 2.03 45.08 16
11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16
12 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16
13 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16
14 C 0.33 10.23 7.01 170.96 1.20 11.43 16
15 N -0.32 -9.85 3.85 -358.30 -1.38 -11.23 16
16 C 0.16 4.27 9.37 83.47 0.78 5.05 16
17 C -0.21 -6.34 7.07 36.29 0.26 -6.08 16
18 N 0.08 2.44 4.45 -46.67 -0.21 2.23 16
19 O -0.19 -5.72 19.03 18.88 0.36 -5.36 16
20 O -0.19 -6.03 15.20 18.88 0.29 -5.74 16
21 C 0.14 4.75 6.71 42.52 0.29 5.04 16
22 C 0.00 0.01 5.45 -19.84 -0.11 -0.10 16
23 C -0.15 -4.23 9.89 22.58 0.22 -4.01 16
24 C 0.10 2.38 11.17 84.61 0.95 3.32 16
25 N -0.49 -12.44 10.35 -196.13 -2.03 -14.47 16
26 C 0.10 2.31 11.17 84.61 0.95 3.25 16
27 C -0.12 -3.05 7.66 22.58 0.17 -2.87 16
28 N -0.27 -9.50 12.61 -48.17 -0.61 -10.11 16
29 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16
30 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16
31 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16
32 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16
33 H 0.03 1.00 6.26 -2.38 -0.01 0.98 16
34 H 0.08 3.82 5.36 -2.39 -0.01 3.81 16
35 H 0.09 2.50 7.87 -2.38 -0.02 2.48 16
36 H 0.26 12.99 8.31 -92.70 -0.77 12.22 16
37 H 0.10 3.14 8.04 -2.39 -0.02 3.12 16
38 H 0.14 2.99 7.86 -2.39 -0.02 2.97 16
39 H 0.23 4.12 8.06 -2.91 -0.02 4.10 16
40 H 0.13 3.87 8.06 -2.91 -0.02 3.84 16
41 H 0.18 3.34 8.06 -2.91 -0.02 3.32 16
42 H 0.19 2.96 8.06 -2.91 -0.02 2.94 16
43 H 0.14 3.37 7.01 -2.91 -0.02 3.35 16
Total: -1.00 -63.57 376.45 4.40 -59.17
By element:
Atomic # 1 Polarization: 13.49 SS G_CDS: 1.05 Total: 14.54 kcal
Atomic # 6 Polarization: 4.98 SS G_CDS: 8.07 Total: 13.05 kcal
Atomic # 7 Polarization: -97.20 SS G_CDS: -5.89 Total: -103.09 kcal
Atomic # 8 Polarization: -27.89 SS G_CDS: -0.86 Total: -28.75 kcal
Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal
Total: -63.57 4.40 -59.17 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000840153657.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 142.238 kcal
(2) G-P(sol) polarization free energy of solvation -63.573 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.665 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.405 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.168 kcal
(6) G-S(sol) free energy of system = (1) + (5) 83.069 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.04 seconds