Wall clock time and date at job start Wed Apr 1 2020 04:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 120.00365 * 2 1 4 4 H 1.48504 * 109.47260 * 270.00154 * 3 2 1 5 5 H 1.48499 * 109.47392 * 29.99983 * 3 2 1 6 6 H 1.48497 * 109.47229 * 150.00226 * 3 2 1 7 7 C 1.38812 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00505 * 163.07263 * 7 2 1 9 9 N 1.36941 * 119.99897 * 343.06869 * 7 2 1 10 10 C 1.46923 * 120.63098 * 331.85017 * 9 7 2 11 11 C 1.53197 * 108.77711 * 233.58637 * 10 9 7 12 12 C 1.53036 * 109.31130 * 305.36514 * 11 10 9 13 13 O 1.45201 * 109.46318 * 181.38406 * 12 11 10 14 14 C 1.34750 * 117.00147 * 149.99486 * 13 12 11 15 15 O 1.21502 * 120.00136 * 0.02562 * 14 13 12 16 16 C 1.47414 * 119.99748 * 179.97438 * 14 13 12 17 17 C 1.39970 * 120.32291 * 0.02562 * 16 14 13 18 18 C 1.37720 * 120.04744 * 179.97438 * 17 16 14 19 19 C 1.38649 * 120.44560 * 359.95785 * 18 17 16 20 20 C 1.38348 * 120.06904 * 0.02812 * 19 18 17 21 21 C 1.38775 * 120.15954 * 0.04695 * 20 19 18 22 22 O 1.36157 * 119.70181 * 179.79838 * 21 20 19 23 23 C 1.42918 * 115.92025 * 68.42516 * 22 21 20 24 24 C 1.52083 * 110.71750 * 275.56343 * 23 22 21 25 25 C 1.52069 * 112.36189 * 64.83334 * 24 23 22 26 26 O 1.36496 * 120.29260 * 180.02562 * 20 19 18 27 27 C 1.53039 * 109.54040 * 61.36402 * 12 11 10 28 28 C 1.46924 * 120.63206 * 151.82795 * 9 7 2 29 29 H 0.97000 * 119.99733 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.58988 * 113.80144 * 10 9 7 31 31 H 1.08999 * 109.70525 * 353.43887 * 10 9 7 32 32 H 1.08998 * 109.49742 * 185.41633 * 11 10 9 33 33 H 1.08994 * 109.52439 * 65.33006 * 11 10 9 34 34 H 1.09007 * 109.46019 * 301.35640 * 12 11 10 35 35 H 1.08008 * 119.97937 * 359.94938 * 17 16 14 36 36 H 1.07997 * 119.78192 * 179.97438 * 18 17 16 37 37 H 1.07997 * 119.96818 * 180.02562 * 19 18 17 38 38 H 1.09002 * 109.22214 * 35.91316 * 23 22 21 39 39 H 1.09001 * 109.22382 * 155.30367 * 23 22 21 40 40 H 1.08993 * 108.94274 * 304.06338 * 24 23 22 41 41 H 1.08997 * 108.86878 * 185.54719 * 24 23 22 42 42 H 1.08999 * 109.21295 * 174.79425 * 25 24 23 43 43 H 1.08998 * 109.21780 * 55.41917 * 25 24 23 44 44 H 1.09003 * 109.49549 * 58.58566 * 27 12 11 45 45 H 1.08997 * 109.50161 * 178.68544 * 27 12 11 46 46 H 1.08999 * 109.58896 * 246.20198 * 28 9 7 47 47 H 1.09007 * 109.58455 * 6.48501 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2224 -0.2729 9 7 1.3700 -2.3625 0.3443 10 6 0.2260 -2.3409 1.2660 11 6 0.4973 -3.3208 2.4119 12 6 0.8118 -4.7021 1.8327 13 8 1.0374 -5.6413 2.9168 14 6 0.7169 -6.9297 2.6866 15 8 0.2619 -7.2595 1.6093 16 6 0.9195 -7.9394 3.7415 17 6 1.4437 -7.5671 4.9847 18 6 1.6301 -8.5149 5.9663 19 6 1.3008 -9.8415 5.7336 20 6 0.7816 -10.2223 4.5091 21 6 0.5895 -9.2790 3.5095 22 8 0.0817 -9.6648 2.3065 23 6 -1.2837 -10.0868 2.3110 24 6 -1.3925 -11.5527 2.7012 25 6 -0.9381 -11.8063 4.1301 26 8 0.4554 -11.5269 4.2753 27 6 2.0672 -4.6181 0.9615 28 6 1.8136 -3.6528 -0.2007 29 1 -0.4850 0.8401 0.0004 30 1 -0.6771 -2.6410 0.7347 31 1 0.0967 -1.3359 1.6677 32 1 -0.3833 -3.3862 3.0509 33 1 1.3468 -2.9701 2.9978 34 1 -0.0284 -5.0417 1.2269 35 1 1.7025 -6.5357 5.1744 36 1 2.0352 -8.2229 6.9239 37 1 1.4498 -10.5783 6.5090 38 1 -1.8438 -9.4824 3.0246 39 1 -1.7053 -9.9490 1.3153 40 1 -0.7772 -12.1455 2.0245 41 1 -2.4308 -11.8684 2.5996 42 1 -1.1234 -12.8496 4.3856 43 1 -1.5046 -11.1655 4.8058 44 1 2.9021 -4.2548 1.5607 45 1 2.3039 -5.6067 0.5682 46 1 1.0400 -4.0599 -0.8517 47 1 2.7331 -3.5125 -0.7692 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845497619.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:02 Heat of formation + Delta-G solvation = -106.895341 kcal Electronic energy + Delta-G solvation = -30992.474079 eV Core-core repulsion = 26720.866123 eV Total energy + Delta-G solvation = -4271.607955 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.33963 -40.04826 -37.97141 -37.81677 -37.14666 -35.68428 -33.27212 -32.71429 -31.41411 -30.30709 -29.59247 -29.46387 -26.95145 -25.51026 -24.41805 -22.60893 -22.31595 -22.20722 -21.84357 -20.63057 -19.33738 -18.84302 -17.75894 -17.33967 -16.86230 -16.79174 -15.94657 -15.87535 -15.69445 -15.36138 -15.23678 -14.79641 -14.37870 -14.23803 -14.03476 -13.57630 -13.56464 -13.36964 -13.05273 -12.90914 -12.65234 -12.45875 -12.39053 -12.23867 -11.52895 -11.51581 -11.27794 -11.20423 -11.04559 -10.74706 -10.73263 -10.70182 -10.57811 -10.35709 -10.18476 -10.06806 -9.86941 -9.64584 -9.43409 -9.25417 -8.86130 -8.49593 -6.72548 -5.82074 -3.24388 0.35595 0.73770 2.47007 2.77826 3.14148 3.16630 3.37067 3.43979 3.46715 3.57354 4.27217 4.32326 4.48081 4.52064 4.56935 4.72904 4.79556 4.90109 4.92615 4.97074 4.99801 5.18851 5.27625 5.34455 5.38217 5.43787 5.45867 5.53953 5.63678 5.74484 5.76897 5.81240 5.95199 6.02965 6.14972 6.24474 6.37471 6.45278 6.51635 6.59320 6.74367 6.78992 6.86473 6.97574 7.22992 7.28215 7.57705 7.77791 8.01170 8.41802 9.17743 9.80548 10.37377 11.27298 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.025120 B = 0.002278 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.374535 B =12285.918178 C =12860.470498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.067 0.933 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.135 4.135 12 C 0.101 3.899 13 O -0.354 6.354 14 C 0.501 3.499 15 O -0.485 6.485 16 C -0.122 4.122 17 C -0.055 4.055 18 C -0.126 4.126 19 C -0.086 4.086 20 C 0.049 3.951 21 C 0.128 3.872 22 O -0.297 6.297 23 C 0.065 3.935 24 C -0.189 4.189 25 C 0.058 3.942 26 O -0.316 6.316 27 C -0.146 4.146 28 C 0.149 3.851 29 H 0.255 0.745 30 H 0.022 0.978 31 H 0.096 0.904 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.150 0.850 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.056 0.944 39 H 0.108 0.892 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.105 0.895 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.056 0.944 46 H 0.022 0.978 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.611 -23.004 13.848 26.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.383 4.383 8 H 0.085 0.915 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.174 4.174 12 C 0.047 3.953 13 O -0.271 6.271 14 C 0.344 3.656 15 O -0.373 6.373 16 C -0.123 4.123 17 C -0.073 4.073 18 C -0.144 4.144 19 C -0.105 4.105 20 C 0.005 3.995 21 C 0.082 3.918 22 O -0.212 6.212 23 C -0.010 4.010 24 C -0.227 4.227 25 C -0.016 4.016 26 O -0.232 6.232 27 C -0.186 4.186 28 C 0.022 3.978 29 H 0.065 0.935 30 H 0.040 0.960 31 H 0.115 0.885 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.167 0.833 36 H 0.159 0.841 37 H 0.158 0.842 38 H 0.075 0.925 39 H 0.126 0.874 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.123 0.877 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.074 0.926 46 H 0.040 0.960 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.662 -23.065 13.265 26.741 hybrid contribution 0.064 0.805 -0.052 0.809 sum -2.598 -22.260 13.213 26.016 Atomic orbital electron populations 1.70018 1.05294 1.25631 1.53881 1.25065 0.95315 0.98506 1.00752 0.86280 0.79168 0.83480 0.77749 1.21357 1.21524 1.20430 1.19185 0.92634 0.84657 1.41787 0.91542 1.44120 1.35790 1.01724 1.49898 1.20803 0.88918 0.97911 0.87551 1.22463 1.01217 0.92706 1.01029 1.22953 0.99055 0.87129 0.86153 1.86588 1.77328 1.17398 1.45826 1.20713 0.75626 0.82673 0.86590 1.90861 1.40379 1.80938 1.25081 1.19363 1.07775 0.90532 0.94675 1.21561 0.93935 1.01190 0.90597 1.21086 1.01271 0.91928 1.00139 1.21336 0.97708 0.96671 0.94736 1.18994 1.03265 0.84238 0.93028 1.19186 0.96407 0.90170 0.86010 1.86426 1.26711 1.83098 1.24962 1.22624 0.81098 0.93436 1.03806 1.22528 1.03366 0.98496 0.98310 1.22680 0.80520 1.02352 0.96077 1.86396 1.24743 1.21165 1.90917 1.22465 0.97159 1.00071 0.98887 1.20862 0.98216 0.86389 0.92291 0.93536 0.96024 0.88550 0.92422 0.91422 0.90325 0.83259 0.84103 0.84214 0.92543 0.87362 0.89622 0.89006 0.87678 0.92356 0.91344 0.92578 0.96049 0.92079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.07 11.19 55.49 0.62 -25.45 16 2 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 21.56 29.59 -169.99 -5.03 16.53 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.25 -6.95 9.58 -15.06 -0.14 -7.09 16 8 H 0.07 1.79 7.88 -52.49 -0.41 1.37 16 9 N -0.59 -15.01 2.99 -172.32 -0.52 -15.53 16 10 C 0.17 4.16 5.30 -3.71 -0.02 4.14 16 11 C -0.13 -2.64 5.74 -26.61 -0.15 -2.79 16 12 C 0.10 1.91 2.42 -26.69 -0.06 1.85 16 13 O -0.35 -6.07 9.14 -40.63 -0.37 -6.44 16 14 C 0.50 8.44 7.87 34.47 0.27 8.71 16 15 O -0.48 -9.37 14.44 -26.56 -0.38 -9.75 16 16 C -0.12 -1.68 5.88 -104.89 -0.62 -2.29 16 17 C -0.05 -0.58 9.62 -39.12 -0.38 -0.95 16 18 C -0.13 -1.02 10.02 -39.62 -0.40 -1.41 16 19 C -0.09 -0.74 9.99 -39.39 -0.39 -1.13 16 20 C 0.05 0.55 5.73 -39.34 -0.23 0.32 16 21 C 0.13 1.72 5.73 -38.76 -0.22 1.50 16 22 O -0.30 -4.30 8.26 -49.06 -0.41 -4.71 16 23 C 0.06 0.67 6.52 36.69 0.24 0.91 16 24 C -0.19 -1.41 5.92 -27.67 -0.16 -1.57 16 25 C 0.06 0.43 6.51 36.68 0.24 0.67 16 26 O -0.32 -3.37 10.16 -36.83 -0.37 -3.75 16 27 C -0.15 -2.82 5.72 -26.61 -0.15 -2.97 16 28 C 0.15 3.26 6.52 -3.71 -0.02 3.24 16 29 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.10 2.53 6.07 -51.93 -0.31 2.21 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.08 1.59 7.16 -51.93 -0.37 1.21 16 35 H 0.15 1.44 7.62 -52.48 -0.40 1.04 16 36 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.06 0.55 7.93 -51.93 -0.41 0.14 16 39 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.38 7.93 -51.93 -0.41 -0.03 16 44 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.06 1.29 7.93 -51.92 -0.41 0.88 16 LS Contribution 379.46 15.07 5.72 5.72 Total: -1.00 -32.97 379.46 -9.97 -42.95 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -6.94 Total: -0.65 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -2.29 Total: 1.08 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.11 Total: -40.98 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -1.53 Total: -24.65 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.97 -9.97 -42.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845497619.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.947 kcal (2) G-P(sol) polarization free energy of solvation -32.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds