Wall clock time and date at job start Wed Apr 1 2020 04:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 120.00365 * 2 1 4 4 H 1.48504 * 109.47260 * 270.00154 * 3 2 1 5 5 H 1.48499 * 109.47392 * 29.99983 * 3 2 1 6 6 H 1.48497 * 109.47229 * 150.00226 * 3 2 1 7 7 C 1.38812 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00505 * 163.07263 * 7 2 1 9 9 N 1.36941 * 119.99897 * 343.06869 * 7 2 1 10 10 C 1.46923 * 120.63098 * 331.85017 * 9 7 2 11 11 C 1.53197 * 108.77711 * 233.58637 * 10 9 7 12 12 C 1.53036 * 109.31130 * 305.36514 * 11 10 9 13 13 O 1.45201 * 109.46318 * 181.38406 * 12 11 10 14 14 C 1.34750 * 117.00147 * 149.99486 * 13 12 11 15 15 O 1.21502 * 120.00136 * 0.02562 * 14 13 12 16 16 C 1.47414 * 119.99748 * 179.97438 * 14 13 12 17 17 C 1.39970 * 120.32291 * 0.02562 * 16 14 13 18 18 C 1.37720 * 120.04744 * 179.97438 * 17 16 14 19 19 C 1.38649 * 120.44560 * 359.95785 * 18 17 16 20 20 C 1.38348 * 120.06904 * 0.02812 * 19 18 17 21 21 C 1.38775 * 120.15954 * 0.04695 * 20 19 18 22 22 O 1.36157 * 119.70181 * 179.79838 * 21 20 19 23 23 C 1.42918 * 115.92025 * 68.42516 * 22 21 20 24 24 C 1.52083 * 110.71750 * 275.56343 * 23 22 21 25 25 C 1.52069 * 112.36189 * 64.83334 * 24 23 22 26 26 O 1.36496 * 120.29260 * 180.02562 * 20 19 18 27 27 C 1.53039 * 109.54040 * 61.36402 * 12 11 10 28 28 C 1.46924 * 120.63206 * 151.82795 * 9 7 2 29 29 H 0.97000 * 119.99733 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.58988 * 113.80144 * 10 9 7 31 31 H 1.08999 * 109.70525 * 353.43887 * 10 9 7 32 32 H 1.08998 * 109.49742 * 185.41633 * 11 10 9 33 33 H 1.08994 * 109.52439 * 65.33006 * 11 10 9 34 34 H 1.09007 * 109.46019 * 301.35640 * 12 11 10 35 35 H 1.08008 * 119.97937 * 359.94938 * 17 16 14 36 36 H 1.07997 * 119.78192 * 179.97438 * 18 17 16 37 37 H 1.07997 * 119.96818 * 180.02562 * 19 18 17 38 38 H 1.09002 * 109.22214 * 35.91316 * 23 22 21 39 39 H 1.09001 * 109.22382 * 155.30367 * 23 22 21 40 40 H 1.08993 * 108.94274 * 304.06338 * 24 23 22 41 41 H 1.08997 * 108.86878 * 185.54719 * 24 23 22 42 42 H 1.08999 * 109.21295 * 174.79425 * 25 24 23 43 43 H 1.08998 * 109.21780 * 55.41917 * 25 24 23 44 44 H 1.09003 * 109.49549 * 58.58566 * 27 12 11 45 45 H 1.08997 * 109.50161 * 178.68544 * 27 12 11 46 46 H 1.08999 * 109.58896 * 246.20198 * 28 9 7 47 47 H 1.09007 * 109.58455 * 6.48501 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2224 -0.2729 9 7 1.3700 -2.3625 0.3443 10 6 0.2260 -2.3409 1.2660 11 6 0.4973 -3.3208 2.4119 12 6 0.8118 -4.7021 1.8327 13 8 1.0374 -5.6413 2.9168 14 6 0.7169 -6.9297 2.6866 15 8 0.2619 -7.2595 1.6093 16 6 0.9195 -7.9394 3.7415 17 6 1.4437 -7.5671 4.9847 18 6 1.6301 -8.5149 5.9663 19 6 1.3008 -9.8415 5.7336 20 6 0.7816 -10.2223 4.5091 21 6 0.5895 -9.2790 3.5095 22 8 0.0817 -9.6648 2.3065 23 6 -1.2837 -10.0868 2.3110 24 6 -1.3925 -11.5527 2.7012 25 6 -0.9381 -11.8063 4.1301 26 8 0.4554 -11.5269 4.2753 27 6 2.0672 -4.6181 0.9615 28 6 1.8136 -3.6528 -0.2007 29 1 -0.4850 0.8401 0.0004 30 1 -0.6771 -2.6410 0.7347 31 1 0.0967 -1.3359 1.6677 32 1 -0.3833 -3.3862 3.0509 33 1 1.3468 -2.9701 2.9978 34 1 -0.0284 -5.0417 1.2269 35 1 1.7025 -6.5357 5.1744 36 1 2.0352 -8.2229 6.9239 37 1 1.4498 -10.5783 6.5090 38 1 -1.8438 -9.4824 3.0246 39 1 -1.7053 -9.9490 1.3153 40 1 -0.7772 -12.1455 2.0245 41 1 -2.4308 -11.8684 2.5996 42 1 -1.1234 -12.8496 4.3856 43 1 -1.5046 -11.1655 4.8058 44 1 2.9021 -4.2548 1.5607 45 1 2.3039 -5.6067 0.5682 46 1 1.0400 -4.0599 -0.8517 47 1 2.7331 -3.5125 -0.7692 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845497619.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:01 Heat of formation + Delta-G solvation = -124.794023 kcal Electronic energy + Delta-G solvation = -30993.250224 eV Core-core repulsion = 26720.866123 eV Total energy + Delta-G solvation = -4272.384101 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.23933 -41.31033 -39.21792 -38.65474 -38.37436 -37.20538 -34.62723 -33.92609 -32.50248 -31.96156 -31.40084 -30.25048 -27.72821 -27.19661 -25.67448 -24.09217 -23.80919 -23.06728 -22.90769 -21.80800 -21.06121 -19.76044 -18.90640 -18.77004 -18.14465 -17.81464 -17.17092 -17.07291 -16.78470 -16.40682 -16.30928 -16.00933 -15.68786 -15.43519 -15.13546 -15.06266 -14.92928 -14.63222 -14.48034 -14.22599 -14.17719 -13.46707 -13.30726 -13.16761 -13.07812 -13.02268 -12.68308 -12.60970 -12.49336 -12.23842 -12.16977 -12.01612 -11.97852 -11.86819 -11.65109 -11.45749 -11.42522 -11.10418 -10.94403 -10.57339 -10.09114 -9.63886 -8.77456 -7.91498 -5.37643 -0.54082 -0.02069 1.40537 1.47059 1.49369 1.52022 1.59896 2.29287 2.41489 2.50311 2.74195 3.24893 3.43245 3.58019 3.65849 3.70324 3.76641 3.82613 3.86075 4.01248 4.12092 4.12854 4.17196 4.24635 4.30731 4.33850 4.35452 4.47158 4.53420 4.71010 4.72878 4.77564 4.81781 4.84450 4.92758 5.01640 5.03713 5.05675 5.10344 5.18076 5.22917 5.36764 5.43932 5.49354 5.61079 5.66349 6.05509 6.35117 6.43095 6.68298 7.09915 7.77749 8.31431 9.16550 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.025120 B = 0.002278 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.374535 B =12285.918178 C =12860.470498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.049 4.049 3 Si 0.971 3.029 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.269 1.269 7 C -0.267 4.267 8 H 0.069 0.931 9 N -0.610 5.610 10 C 0.181 3.819 11 C -0.119 4.119 12 C 0.108 3.892 13 O -0.346 6.346 14 C 0.499 3.501 15 O -0.520 6.520 16 C -0.152 4.152 17 C -0.054 4.054 18 C -0.109 4.109 19 C -0.070 4.070 20 C 0.040 3.960 21 C 0.107 3.893 22 O -0.332 6.332 23 C 0.055 3.945 24 C -0.182 4.182 25 C 0.052 3.948 26 O -0.331 6.331 27 C -0.133 4.133 28 C 0.148 3.852 29 H 0.252 0.748 30 H -0.001 1.001 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.158 0.842 36 H 0.183 0.817 37 H 0.174 0.826 38 H 0.056 0.944 39 H 0.104 0.896 40 H 0.075 0.925 41 H 0.122 0.878 42 H 0.134 0.866 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.012 0.988 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.607 -24.536 16.815 29.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.244 4.244 3 Si 0.799 3.201 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.194 1.194 7 C -0.397 4.397 8 H 0.087 0.913 9 N -0.333 5.333 10 C 0.055 3.945 11 C -0.158 4.158 12 C 0.053 3.947 13 O -0.263 6.263 14 C 0.345 3.655 15 O -0.410 6.410 16 C -0.154 4.154 17 C -0.072 4.072 18 C -0.127 4.127 19 C -0.088 4.088 20 C -0.004 4.004 21 C 0.062 3.938 22 O -0.248 6.248 23 C -0.019 4.019 24 C -0.219 4.219 25 C -0.022 4.022 26 O -0.248 6.248 27 C -0.172 4.172 28 C 0.022 3.978 29 H 0.062 0.938 30 H 0.017 0.983 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.176 0.824 36 H 0.200 0.800 37 H 0.191 0.809 38 H 0.075 0.925 39 H 0.122 0.878 40 H 0.093 0.907 41 H 0.140 0.860 42 H 0.152 0.848 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.030 0.970 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.648 -24.629 16.248 29.551 hybrid contribution -0.286 1.149 -0.965 1.527 sum -1.934 -23.480 15.283 28.082 Atomic orbital electron populations 1.70171 1.06736 1.26155 1.55069 1.25850 0.96092 1.01651 1.00806 0.85227 0.78117 0.79199 0.77579 1.21210 1.21617 1.19368 1.19519 0.92978 0.85688 1.41490 0.91298 1.44374 1.35950 1.02335 1.50656 1.20593 0.87913 0.97639 0.88381 1.22176 1.02339 0.91905 0.99395 1.22631 0.98276 0.87308 0.86441 1.86574 1.77455 1.17699 1.44568 1.21381 0.74482 0.82568 0.87093 1.90839 1.42181 1.81187 1.26760 1.19344 1.10965 0.89879 0.95177 1.21760 0.93339 1.02335 0.89792 1.21515 0.99365 0.91016 1.00804 1.21770 0.95213 0.97637 0.94207 1.19204 1.03695 0.84110 0.93390 1.19477 0.97316 0.90673 0.86379 1.86349 1.28395 1.83635 1.26420 1.22833 0.79719 0.95503 1.03813 1.22490 1.05049 0.95956 0.98443 1.22961 0.79114 1.04231 0.95876 1.86366 1.26676 1.20725 1.91026 1.22270 0.97420 0.99554 0.97950 1.20933 0.97963 0.85664 0.93261 0.93846 0.98269 0.91073 0.90312 0.90963 0.91982 0.82449 0.80007 0.80877 0.92537 0.87777 0.90660 0.85980 0.84808 0.91390 0.90803 0.91826 0.97023 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.29 11.19 21.65 0.24 -55.05 16 2 C -0.05 -2.71 4.92 84.86 0.42 -2.29 16 3 Si 0.97 44.64 29.59 68.60 2.03 46.67 16 4 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 7 C -0.27 -14.81 9.58 84.03 0.81 -14.01 16 8 H 0.07 3.71 7.88 -2.91 -0.02 3.69 16 9 N -0.61 -31.53 2.99 -699.09 -2.09 -33.62 16 10 C 0.18 8.87 5.30 86.36 0.46 9.33 16 11 C -0.12 -4.66 5.74 30.67 0.18 -4.48 16 12 C 0.11 4.12 2.42 30.62 0.07 4.20 16 13 O -0.35 -11.77 9.14 -56.60 -0.52 -12.29 16 14 C 0.50 17.14 7.87 70.24 0.55 17.69 16 15 O -0.52 -21.00 14.44 26.80 0.39 -20.61 16 16 C -0.15 -4.14 5.88 -20.04 -0.12 -4.25 16 17 C -0.05 -1.02 9.62 22.57 0.22 -0.81 16 18 C -0.11 -1.32 10.02 22.25 0.22 -1.09 16 19 C -0.07 -0.94 9.99 22.39 0.22 -0.71 16 20 C 0.04 0.82 5.73 22.42 0.13 0.95 16 21 C 0.11 2.86 5.73 22.80 0.13 2.99 16 22 O -0.33 -10.01 8.26 -67.79 -0.56 -10.57 16 23 C 0.06 1.18 6.52 71.68 0.47 1.65 16 24 C -0.18 -2.52 5.92 29.98 0.18 -2.34 16 25 C 0.05 0.65 6.51 71.67 0.47 1.11 16 26 O -0.33 -6.45 10.16 -84.47 -0.86 -7.31 16 27 C -0.13 -5.12 5.72 30.67 0.18 -4.95 16 28 C 0.15 6.58 6.52 86.36 0.56 7.15 16 29 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 30 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 31 H 0.07 3.85 6.07 -2.39 -0.01 3.84 16 32 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 34 H 0.06 2.60 7.16 -2.38 -0.02 2.58 16 35 H 0.16 2.65 7.62 -2.91 -0.02 2.63 16 36 H 0.18 0.74 8.06 -2.91 -0.02 0.72 16 37 H 0.17 1.17 8.06 -2.91 -0.02 1.14 16 38 H 0.06 1.14 7.93 -2.39 -0.02 1.13 16 39 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.07 0.72 7.93 -2.39 -0.02 0.70 16 44 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 45 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 46 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.07 2.84 7.93 -2.38 -0.02 2.82 16 Total: -1.00 -74.39 379.46 4.74 -69.65 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.98 Total: 12.99 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: 5.14 Total: 10.14 kcal Atomic # 7 Polarization: -86.82 SS G_CDS: -1.85 Total: -88.67 kcal Atomic # 8 Polarization: -49.23 SS G_CDS: -1.55 Total: -50.78 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -74.39 4.74 -69.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845497619.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.146 kcal (2) G-P(sol) polarization free energy of solvation -74.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds