Wall clock time and date at job start Wed Apr 1 2020 04:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99732 * 2 1 4 4 H 1.48491 * 109.47400 * 359.97438 * 3 2 1 5 5 H 1.48504 * 109.47361 * 119.99964 * 3 2 1 6 6 H 1.48506 * 109.47036 * 239.99421 * 3 2 1 7 7 C 1.37874 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00521 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00120 * 0.02562 * 7 2 1 10 10 O 1.42893 * 109.47441 * 179.97438 * 9 7 2 11 11 C 1.42905 * 114.00165 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47299 * 180.02562 * 11 10 9 13 13 O 1.45194 * 109.47078 * 64.99446 * 12 11 10 14 14 C 1.34234 * 117.00144 * 180.02562 * 13 12 11 15 15 O 1.20832 * 119.99798 * 0.02562 * 14 13 12 16 16 C 1.50701 * 120.00561 * 180.02562 * 14 13 12 17 17 C 1.50703 * 109.59834 * 294.61002 * 16 14 13 18 18 C 1.38233 * 119.99796 * 119.72690 * 17 16 14 19 19 C 1.38238 * 119.99556 * 179.76627 * 18 17 16 20 20 C 1.38231 * 120.00164 * 0.49636 * 19 18 17 21 21 C 1.38239 * 119.99916 * 359.75615 * 20 19 18 22 22 C 1.38232 * 119.99815 * 359.97438 * 21 20 19 23 23 C 1.53352 * 109.59817 * 54.92970 * 16 14 13 24 24 C 1.53365 * 108.27653 * 52.43372 * 23 16 14 25 25 C 1.50176 * 109.99347 * 48.73662 * 24 23 16 26 26 O 1.21280 * 118.24417 * 162.47390 * 25 24 23 27 27 N 1.33351 * 123.50776 * 342.45493 * 25 24 23 28 28 C 1.45756 * 124.10782 * 2.24397 * 27 25 24 29 29 H 0.96998 * 120.00277 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47290 * 300.00008 * 9 7 2 31 31 H 1.09003 * 109.46975 * 59.99675 * 9 7 2 32 32 H 1.09003 * 109.46724 * 299.99925 * 11 10 9 33 33 H 1.08991 * 109.47192 * 60.00156 * 11 10 9 34 34 H 1.08994 * 109.47143 * 185.00150 * 12 11 10 35 35 H 1.09010 * 109.46736 * 304.99882 * 12 11 10 36 36 H 1.08004 * 120.00476 * 359.97438 * 18 17 16 37 37 H 1.08006 * 119.99906 * 180.23323 * 19 18 17 38 38 H 1.07999 * 120.00342 * 179.72695 * 20 19 18 39 39 H 1.07993 * 119.99800 * 179.97438 * 21 20 19 40 40 H 1.08002 * 119.99850 * 179.97438 * 22 21 20 41 41 H 1.09006 * 109.66793 * 171.96197 * 23 16 14 42 42 H 1.08994 * 109.67385 * 292.49028 * 23 16 14 43 43 H 1.09003 * 109.32103 * 288.59540 * 24 23 16 44 44 H 1.08994 * 109.31268 * 168.87329 * 24 23 16 45 45 H 0.97005 * 117.94481 * 182.22085 * 27 25 24 46 46 H 1.09003 * 109.30246 * 220.59217 * 28 27 25 47 47 H 1.08994 * 109.13419 * 101.10690 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5852 0.0005 11 6 1.5652 -4.8754 0.0000 12 6 2.6481 -5.9562 0.0006 13 8 3.3985 -5.8886 1.2418 14 6 4.3932 -6.7757 1.4017 15 8 4.6293 -7.5817 0.5329 16 6 5.2155 -6.7665 2.6645 17 6 5.9982 -5.4814 2.7487 18 6 5.8031 -4.6218 3.8135 19 6 6.5246 -3.4454 3.8932 20 6 7.4337 -3.1237 2.9028 21 6 7.6251 -3.9809 1.8353 22 6 6.9076 -5.1599 1.7585 23 6 4.2903 -6.8861 3.8817 24 6 3.3812 -8.1042 3.6769 25 6 4.2018 -9.2953 3.2730 26 8 3.7071 -10.3971 3.3831 27 7 5.4452 -9.2062 2.7994 28 6 6.1785 -7.9544 2.6585 29 1 -0.4850 0.8400 -0.0004 30 1 0.6241 -2.5568 0.8903 31 1 0.6248 -2.5571 -0.8897 32 1 0.9447 -4.9827 0.8897 33 1 0.9454 -4.9822 -0.8902 34 1 2.1822 -6.9374 -0.0894 35 1 3.3223 -5.7955 -0.8408 36 1 5.0894 -4.8709 4.5849 37 1 6.3749 -2.7755 4.7271 38 1 7.9942 -2.2025 2.9628 39 1 8.3350 -3.7293 1.0614 40 1 7.0568 -5.8295 0.9243 41 1 4.8867 -7.0229 4.7838 42 1 3.6866 -5.9834 3.9737 43 1 2.6537 -7.8839 2.8956 44 1 2.8578 -8.3238 4.6074 45 1 5.8897 -10.0259 2.5322 46 1 6.7319 -7.9647 1.7195 47 1 6.8783 -7.8549 3.4881 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848788133.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:00 Heat of formation + Delta-G solvation = -144.191530 kcal Electronic energy + Delta-G solvation = -31414.476107 eV Core-core repulsion = 27141.250867 eV Total energy + Delta-G solvation = -4273.225240 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.74844 -39.73040 -39.24404 -37.31714 -36.55073 -36.00276 -33.85072 -32.79161 -32.01324 -30.97812 -30.18172 -28.68710 -26.99624 -25.35609 -24.70042 -22.92048 -22.39577 -22.20850 -21.80492 -21.12918 -19.20613 -18.11550 -17.42217 -16.83676 -16.60972 -16.51359 -16.37255 -16.23629 -15.73384 -15.20472 -14.87491 -14.83991 -14.68119 -14.41517 -14.14853 -14.04146 -13.86654 -13.69744 -13.43663 -13.00554 -12.88698 -12.75542 -12.42688 -12.11136 -12.00143 -11.76486 -11.71459 -11.47281 -11.21258 -11.01244 -10.97480 -10.87208 -10.79324 -10.47392 -10.41378 -10.08600 -9.98167 -9.36564 -9.17164 -9.00603 -8.92856 -8.88913 -8.24343 -6.14445 -4.16196 1.12960 1.31057 2.10392 2.42127 2.57735 3.00526 3.29090 3.32068 3.35638 3.59647 4.00281 4.09975 4.21170 4.29075 4.36158 4.57115 4.69066 4.78046 4.84189 4.89227 4.95027 5.02680 5.14107 5.14580 5.17374 5.22096 5.38899 5.39281 5.40859 5.47275 5.56109 5.62011 5.79176 5.81368 5.88410 5.90603 6.02719 6.33023 6.35225 6.43452 6.47438 6.50101 6.85451 7.02075 7.04253 7.36586 7.69242 7.75216 7.96570 8.09683 8.49187 8.95907 9.48503 10.97108 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011153 B = 0.003344 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.933226 B = 8371.608991 C = 9925.997861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.389 6.389 11 C 0.062 3.938 12 C 0.073 3.927 13 O -0.330 6.330 14 C 0.472 3.528 15 O -0.505 6.505 16 C -0.020 4.020 17 C -0.081 4.081 18 C -0.098 4.098 19 C -0.114 4.114 20 C -0.109 4.109 21 C -0.113 4.113 22 C -0.108 4.108 23 C -0.116 4.116 24 C -0.144 4.144 25 C 0.520 3.480 26 O -0.557 6.557 27 N -0.712 5.712 28 C 0.134 3.866 29 H 0.265 0.735 30 H 0.007 0.993 31 H 0.005 0.995 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.131 0.869 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.113 0.887 45 H 0.403 0.597 46 H 0.091 0.909 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.290 -13.247 9.059 21.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.211 1.211 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.084 0.916 9 C 0.121 3.879 10 O -0.309 6.309 11 C -0.015 4.015 12 C -0.001 4.001 13 O -0.245 6.245 14 C 0.314 3.686 15 O -0.393 6.393 16 C -0.022 4.022 17 C -0.081 4.081 18 C -0.116 4.116 19 C -0.132 4.132 20 C -0.127 4.127 21 C -0.131 4.131 22 C -0.126 4.126 23 C -0.153 4.153 24 C -0.184 4.184 25 C 0.307 3.693 26 O -0.436 6.436 27 N -0.363 5.363 28 C 0.010 3.990 29 H 0.074 0.926 30 H 0.025 0.975 31 H 0.023 0.977 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.149 0.851 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.110 0.890 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.131 0.869 45 H 0.239 0.761 46 H 0.110 0.890 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.980 -13.674 8.892 21.482 hybrid contribution 0.154 0.713 -0.540 0.907 sum 14.134 -12.961 8.352 20.917 Atomic orbital electron populations 1.69946 1.06098 1.27319 1.50432 1.24932 0.94962 0.99388 0.95109 0.86404 0.79342 0.81926 0.78868 1.21131 1.19958 1.20017 1.20988 0.94013 0.89265 1.50982 0.91612 1.20226 0.88720 0.83486 0.95458 1.87926 1.35244 1.12523 1.95215 1.22306 0.93131 0.85508 1.00597 1.23267 0.93739 0.98869 0.84199 1.86605 1.42981 1.53516 1.41400 1.23105 0.79335 0.78107 0.88054 1.90670 1.67758 1.37907 1.42966 1.19681 0.94547 0.95174 0.92808 1.19047 0.97838 0.94364 0.96891 1.21098 0.98861 0.93922 0.97720 1.21171 0.96148 0.96589 0.99260 1.21247 0.98116 0.99178 0.94188 1.21098 0.99739 0.94097 0.98212 1.20980 0.96144 0.97594 0.97873 1.21983 0.97578 0.99652 0.96118 1.21823 0.98730 0.92549 1.05292 1.20127 0.81679 0.91111 0.76355 1.90758 1.69540 1.28125 1.55162 1.45307 1.15459 1.10340 1.65239 1.21325 0.92768 0.81204 1.03750 0.92558 0.97521 0.97683 0.93170 0.91921 0.90461 0.90466 0.85129 0.85587 0.85848 0.85783 0.86182 0.89006 0.87862 0.88076 0.86895 0.76085 0.89043 0.89653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.51 -14.96 9.43 -34.44 -0.32 -15.28 16 8 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 9 C 0.20 5.27 5.69 36.01 0.20 5.47 16 10 O -0.39 -9.27 10.30 -38.80 -0.40 -9.67 16 11 C 0.06 1.12 6.33 37.16 0.24 1.35 16 12 C 0.07 1.14 5.84 37.16 0.22 1.35 16 13 O -0.33 -5.24 10.01 -42.03 -0.42 -5.66 16 14 C 0.47 6.55 4.43 36.01 0.16 6.71 16 15 O -0.50 -7.79 15.33 -18.75 -0.29 -8.08 16 16 C -0.02 -0.21 0.56 -156.67 -0.09 -0.30 16 17 C -0.08 -0.87 4.73 -104.62 -0.50 -1.37 16 18 C -0.10 -1.00 9.01 -39.58 -0.36 -1.36 16 19 C -0.11 -1.17 10.05 -39.58 -0.40 -1.57 16 20 C -0.11 -1.14 10.05 -39.58 -0.40 -1.53 16 21 C -0.11 -1.21 10.05 -39.58 -0.40 -1.60 16 22 C -0.11 -1.20 8.91 -39.59 -0.35 -1.55 16 23 C -0.12 -1.00 3.53 -26.36 -0.09 -1.10 16 24 C -0.14 -1.45 5.51 -27.95 -0.15 -1.60 16 25 C 0.52 6.36 7.45 -11.87 -0.09 6.27 16 26 O -0.56 -8.93 17.78 5.56 0.10 -8.83 16 27 N -0.71 -7.01 5.10 -61.39 -0.31 -7.32 16 28 C 0.13 1.13 5.11 -4.49 -0.02 1.11 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.08 1.03 8.13 -51.93 -0.42 0.60 16 35 H 0.08 1.24 8.13 -51.92 -0.42 0.82 16 36 H 0.13 1.06 5.91 -52.48 -0.31 0.75 16 37 H 0.13 1.06 8.06 -52.48 -0.42 0.63 16 38 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 40 H 0.12 1.25 7.73 -52.49 -0.41 0.84 16 41 H 0.09 0.58 7.97 -51.93 -0.41 0.16 16 42 H 0.10 0.91 7.03 -51.93 -0.36 0.55 16 43 H 0.10 1.12 7.42 -51.93 -0.39 0.74 16 44 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.40 3.54 8.80 -40.82 -0.36 3.18 16 46 H 0.09 0.76 7.33 -51.93 -0.38 0.38 16 47 H 0.09 0.53 8.11 -51.93 -0.42 0.10 16 LS Contribution 392.37 15.07 5.91 5.91 Total: -1.00 -36.01 392.37 -8.96 -44.96 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.81 Total: 1.44 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -2.45 Total: -3.46 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: 0.42 Total: -33.11 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -1.01 Total: -32.23 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.01 -8.96 -44.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848788133.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.229 kcal (2) G-P(sol) polarization free energy of solvation -36.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds