Wall clock time and date at job start Wed Apr 1 2020 04:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99732 * 2 1 4 4 H 1.48491 * 109.47400 * 359.97438 * 3 2 1 5 5 H 1.48504 * 109.47361 * 119.99964 * 3 2 1 6 6 H 1.48506 * 109.47036 * 239.99421 * 3 2 1 7 7 C 1.37874 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00521 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00120 * 0.02562 * 7 2 1 10 10 O 1.42893 * 109.47441 * 179.97438 * 9 7 2 11 11 C 1.42905 * 114.00165 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47299 * 180.02562 * 11 10 9 13 13 O 1.45194 * 109.47078 * 64.99446 * 12 11 10 14 14 C 1.34234 * 117.00144 * 180.02562 * 13 12 11 15 15 O 1.20832 * 119.99798 * 0.02562 * 14 13 12 16 16 C 1.50701 * 120.00561 * 180.02562 * 14 13 12 17 17 C 1.50703 * 109.59834 * 294.61002 * 16 14 13 18 18 C 1.38233 * 119.99796 * 119.72690 * 17 16 14 19 19 C 1.38238 * 119.99556 * 179.76627 * 18 17 16 20 20 C 1.38231 * 120.00164 * 0.49636 * 19 18 17 21 21 C 1.38239 * 119.99916 * 359.75615 * 20 19 18 22 22 C 1.38232 * 119.99815 * 359.97438 * 21 20 19 23 23 C 1.53352 * 109.59817 * 54.92970 * 16 14 13 24 24 C 1.53365 * 108.27653 * 52.43372 * 23 16 14 25 25 C 1.50176 * 109.99347 * 48.73662 * 24 23 16 26 26 O 1.21280 * 118.24417 * 162.47390 * 25 24 23 27 27 N 1.33351 * 123.50776 * 342.45493 * 25 24 23 28 28 C 1.45756 * 124.10782 * 2.24397 * 27 25 24 29 29 H 0.96998 * 120.00277 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47290 * 300.00008 * 9 7 2 31 31 H 1.09003 * 109.46975 * 59.99675 * 9 7 2 32 32 H 1.09003 * 109.46724 * 299.99925 * 11 10 9 33 33 H 1.08991 * 109.47192 * 60.00156 * 11 10 9 34 34 H 1.08994 * 109.47143 * 185.00150 * 12 11 10 35 35 H 1.09010 * 109.46736 * 304.99882 * 12 11 10 36 36 H 1.08004 * 120.00476 * 359.97438 * 18 17 16 37 37 H 1.08006 * 119.99906 * 180.23323 * 19 18 17 38 38 H 1.07999 * 120.00342 * 179.72695 * 20 19 18 39 39 H 1.07993 * 119.99800 * 179.97438 * 21 20 19 40 40 H 1.08002 * 119.99850 * 179.97438 * 22 21 20 41 41 H 1.09006 * 109.66793 * 171.96197 * 23 16 14 42 42 H 1.08994 * 109.67385 * 292.49028 * 23 16 14 43 43 H 1.09003 * 109.32103 * 288.59540 * 24 23 16 44 44 H 1.08994 * 109.31268 * 168.87329 * 24 23 16 45 45 H 0.97005 * 117.94481 * 182.22085 * 27 25 24 46 46 H 1.09003 * 109.30246 * 220.59217 * 28 27 25 47 47 H 1.08994 * 109.13419 * 101.10690 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5852 0.0005 11 6 1.5652 -4.8754 0.0000 12 6 2.6481 -5.9562 0.0006 13 8 3.3985 -5.8886 1.2418 14 6 4.3932 -6.7757 1.4017 15 8 4.6293 -7.5817 0.5329 16 6 5.2155 -6.7665 2.6645 17 6 5.9982 -5.4814 2.7487 18 6 5.8031 -4.6218 3.8135 19 6 6.5246 -3.4454 3.8932 20 6 7.4337 -3.1237 2.9028 21 6 7.6251 -3.9809 1.8353 22 6 6.9076 -5.1599 1.7585 23 6 4.2903 -6.8861 3.8817 24 6 3.3812 -8.1042 3.6769 25 6 4.2018 -9.2953 3.2730 26 8 3.7071 -10.3971 3.3831 27 7 5.4452 -9.2062 2.7994 28 6 6.1785 -7.9544 2.6585 29 1 -0.4850 0.8400 -0.0004 30 1 0.6241 -2.5568 0.8903 31 1 0.6248 -2.5571 -0.8897 32 1 0.9447 -4.9827 0.8897 33 1 0.9454 -4.9822 -0.8902 34 1 2.1822 -6.9374 -0.0894 35 1 3.3223 -5.7955 -0.8408 36 1 5.0894 -4.8709 4.5849 37 1 6.3749 -2.7755 4.7271 38 1 7.9942 -2.2025 2.9628 39 1 8.3350 -3.7293 1.0614 40 1 7.0568 -5.8295 0.9243 41 1 4.8867 -7.0229 4.7838 42 1 3.6866 -5.9834 3.9737 43 1 2.6537 -7.8839 2.8956 44 1 2.8578 -8.3238 4.6074 45 1 5.8897 -10.0259 2.5322 46 1 6.7319 -7.9647 1.7195 47 1 6.8783 -7.8549 3.4881 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848788133.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:59 Heat of formation + Delta-G solvation = -167.252973 kcal Electronic energy + Delta-G solvation = -31415.476126 eV Core-core repulsion = 27141.250867 eV Total energy + Delta-G solvation = -4274.225259 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.68959 -40.78458 -40.09477 -38.80117 -37.81486 -37.17152 -34.95815 -34.65436 -32.81199 -31.76385 -31.67556 -29.53129 -29.02307 -26.20455 -25.58463 -24.56132 -23.93789 -23.10525 -22.85852 -22.04842 -20.18042 -18.98253 -18.70574 -18.45171 -17.93399 -17.61321 -17.29479 -17.25766 -17.09835 -16.58311 -16.35417 -16.12345 -15.70523 -15.55817 -15.30403 -15.00408 -14.83311 -14.58690 -14.51820 -14.21527 -14.03692 -13.77003 -13.63867 -13.49905 -13.17777 -12.92724 -12.89230 -12.70221 -12.57330 -12.52740 -12.42617 -12.04447 -11.95409 -11.79482 -11.76692 -11.47316 -11.29459 -10.92612 -10.88988 -10.27775 -10.20469 -9.79065 -9.71430 -8.31419 -6.43543 0.32094 0.52429 1.03612 1.40802 1.45057 1.46905 1.53576 1.55178 2.20438 2.34741 2.80134 3.02727 3.03337 3.19433 3.33294 3.42037 3.51021 3.66222 3.86905 4.01451 4.05293 4.09360 4.15385 4.22179 4.31744 4.35833 4.44085 4.47585 4.52565 4.61857 4.65086 4.68955 4.73743 4.84713 4.85475 4.95320 5.03057 5.15709 5.17411 5.33527 5.54521 5.55008 5.57881 5.66168 5.70967 5.95497 6.09399 6.19333 6.48926 6.57746 6.79365 7.07969 7.27952 8.80576 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.011153 B = 0.003344 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.933226 B = 8371.608991 C = 9925.997861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.010 3.990 3 Si 0.979 3.021 4 H -0.275 1.275 5 H -0.263 1.263 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.209 3.791 10 O -0.406 6.406 11 C 0.055 3.945 12 C 0.077 3.923 13 O -0.345 6.345 14 C 0.469 3.531 15 O -0.525 6.525 16 C -0.016 4.016 17 C -0.088 4.088 18 C -0.105 4.105 19 C -0.125 4.125 20 C -0.121 4.121 21 C -0.127 4.127 22 C -0.123 4.123 23 C -0.111 4.111 24 C -0.142 4.142 25 C 0.515 3.485 26 O -0.603 6.603 27 N -0.704 5.704 28 C 0.135 3.865 29 H 0.271 0.729 30 H -0.010 1.010 31 H -0.011 1.011 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.069 0.931 36 H 0.152 0.848 37 H 0.144 0.856 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.119 0.881 41 H 0.124 0.876 42 H 0.103 0.897 43 H 0.087 0.913 44 H 0.130 0.870 45 H 0.408 0.592 46 H 0.093 0.907 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.626 -12.344 10.258 22.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.189 4.189 3 Si 0.802 3.198 4 H -0.200 1.200 5 H -0.187 1.187 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.078 0.922 9 C 0.134 3.866 10 O -0.326 6.326 11 C -0.022 4.022 12 C 0.004 3.996 13 O -0.261 6.261 14 C 0.313 3.687 15 O -0.414 6.414 16 C -0.017 4.017 17 C -0.088 4.088 18 C -0.122 4.122 19 C -0.143 4.143 20 C -0.138 4.138 21 C -0.145 4.145 22 C -0.141 4.141 23 C -0.148 4.148 24 C -0.182 4.182 25 C 0.304 3.696 26 O -0.486 6.486 27 N -0.354 5.354 28 C 0.011 3.989 29 H 0.080 0.920 30 H 0.008 0.992 31 H 0.007 0.993 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.121 0.879 35 H 0.088 0.912 36 H 0.169 0.831 37 H 0.162 0.838 38 H 0.157 0.843 39 H 0.154 0.846 40 H 0.137 0.863 41 H 0.142 0.858 42 H 0.122 0.878 43 H 0.105 0.895 44 H 0.148 0.852 45 H 0.244 0.756 46 H 0.111 0.889 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 15.348 -12.776 10.084 22.371 hybrid contribution -0.252 0.379 -0.954 1.057 sum 15.096 -12.398 9.129 21.562 Atomic orbital electron populations 1.70050 1.07699 1.28728 1.50401 1.25902 0.95909 1.03207 0.93890 0.85294 0.78194 0.76895 0.79442 1.20015 1.18745 1.19187 1.21310 0.93981 0.90813 1.52393 0.92242 1.19854 0.88529 0.84389 0.93780 1.87871 1.35391 1.14036 1.95309 1.22603 0.94331 0.83429 1.01792 1.23170 0.93216 0.98994 0.84234 1.86600 1.43781 1.54505 1.41228 1.23871 0.78738 0.77115 0.89018 1.90655 1.68172 1.38574 1.44021 1.19785 0.94537 0.95875 0.91532 1.19107 0.97881 0.94660 0.97201 1.21403 0.99056 0.93710 0.98058 1.21506 0.95979 0.96987 0.99815 1.21553 0.98373 0.99780 0.94133 1.21352 1.00125 0.94134 0.98855 1.21129 0.96735 0.98034 0.98202 1.22058 0.97425 0.98880 0.96484 1.21833 0.98515 0.92231 1.05616 1.20501 0.82166 0.91025 0.75954 1.90735 1.70640 1.29825 1.57386 1.45321 1.14947 1.11212 1.63896 1.21511 0.92416 0.79709 1.05279 0.92015 0.99205 0.99306 0.92341 0.90334 0.87911 0.91241 0.83076 0.83833 0.84295 0.84571 0.86262 0.85787 0.87810 0.89454 0.85163 0.75558 0.88916 0.86357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.92 13.29 21.45 0.28 -54.64 16 2 C 0.01 0.55 5.46 84.65 0.46 1.01 16 3 Si 0.98 43.39 29.54 68.60 2.03 45.42 16 4 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.55 -32.16 9.43 25.60 0.24 -31.92 16 8 H 0.06 3.48 7.81 -2.91 -0.02 3.45 16 9 C 0.21 11.55 5.69 71.24 0.41 11.95 16 10 O -0.41 -19.61 10.30 -145.57 -1.50 -21.11 16 11 C 0.06 1.98 6.33 71.98 0.46 2.44 16 12 C 0.08 2.39 5.84 71.98 0.42 2.81 16 13 O -0.35 -10.83 10.01 -48.81 -0.49 -11.32 16 14 C 0.47 12.69 4.43 71.24 0.32 13.01 16 15 O -0.52 -16.01 15.33 21.95 0.34 -15.67 16 16 C -0.02 -0.30 0.56 -53.58 -0.03 -0.33 16 17 C -0.09 -1.76 4.73 -19.87 -0.09 -1.85 16 18 C -0.10 -1.92 9.01 22.27 0.20 -1.72 16 19 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 20 C -0.12 -2.33 10.05 22.27 0.22 -2.10 16 21 C -0.13 -2.57 10.05 22.27 0.22 -2.35 16 22 C -0.12 -2.62 8.91 22.27 0.20 -2.42 16 23 C -0.11 -1.67 3.53 30.83 0.11 -1.56 16 24 C -0.14 -2.66 5.51 29.81 0.16 -2.50 16 25 C 0.52 12.16 7.45 87.71 0.65 12.81 16 26 O -0.60 -19.36 17.78 -3.03 -0.05 -19.42 16 27 N -0.70 -12.92 5.10 -467.33 -2.38 -15.30 16 28 C 0.13 2.00 5.11 86.49 0.44 2.44 16 29 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 30 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 31 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 32 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.10 2.64 8.13 -2.39 -0.02 2.62 16 35 H 0.07 2.24 8.13 -2.38 -0.02 2.22 16 36 H 0.15 2.02 5.91 -2.91 -0.02 2.01 16 37 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 38 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 39 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 40 H 0.12 2.45 7.73 -2.91 -0.02 2.43 16 41 H 0.12 1.09 7.97 -2.38 -0.02 1.07 16 42 H 0.10 1.60 7.03 -2.39 -0.02 1.59 16 43 H 0.09 1.90 7.42 -2.39 -0.02 1.88 16 44 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.41 6.76 8.80 -92.70 -0.82 5.95 16 46 H 0.09 1.41 7.33 -2.39 -0.02 1.39 16 47 H 0.12 1.07 8.11 -2.39 -0.02 1.05 16 Total: -1.00 -78.15 392.37 3.01 -75.14 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.18 Total: 19.28 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 4.62 Total: -2.38 kcal Atomic # 7 Polarization: -67.84 SS G_CDS: -2.10 Total: -69.94 kcal Atomic # 8 Polarization: -65.81 SS G_CDS: -1.70 Total: -67.51 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -78.15 3.01 -75.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848788133.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.118 kcal (2) G-P(sol) polarization free energy of solvation -78.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds