Wall clock time and date at job start Wed Apr 1 2020 04:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00088 * 2 1 4 4 H 1.48501 * 109.47067 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47309 * 300.00495 * 3 2 1 6 6 H 1.48504 * 109.47140 * 60.00524 * 3 2 1 7 7 C 1.38813 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00523 * 163.07163 * 7 2 1 9 9 N 1.36940 * 119.99868 * 343.07589 * 7 2 1 10 10 C 1.46929 * 120.62938 * 151.81104 * 9 7 2 11 11 C 1.53190 * 108.77488 * 126.41614 * 10 9 7 12 12 C 1.53040 * 109.31765 * 54.63168 * 11 10 9 13 13 C 1.53038 * 109.53505 * 298.63850 * 12 11 10 14 14 H 1.08996 * 109.52424 * 301.39317 * 13 12 11 15 15 C 1.53004 * 109.49483 * 181.31471 * 13 12 11 16 16 N 1.46504 * 109.47242 * 175.16197 * 15 13 12 17 17 C 1.34770 * 120.00242 * 179.97438 * 16 15 13 18 18 O 1.21537 * 119.99874 * 359.97438 * 17 16 15 19 19 C 1.47949 * 119.99968 * 180.02562 * 17 16 15 20 20 C 1.39605 * 119.99470 * 359.72475 * 19 17 16 21 21 C 1.37755 * 120.00954 * 179.72572 * 20 19 17 22 22 C 1.39673 * 119.98808 * 0.57283 * 21 20 19 23 23 C 1.47742 * 120.00372 * 179.68192 * 22 21 20 24 24 N 1.34776 * 120.00268 * 35.02249 * 23 22 21 25 25 S 1.71202 * 119.99558 * 215.01830 * 23 22 21 26 26 C 1.39670 * 119.98455 * 359.70141 * 22 21 20 27 27 C 1.37743 * 119.99664 * 359.97438 * 26 22 21 28 28 C 1.46927 * 120.63085 * 331.83307 * 9 7 2 29 29 H 0.96996 * 120.00281 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.58523 * 246.19842 * 10 9 7 31 31 H 1.08996 * 109.58670 * 6.48354 * 10 9 7 32 32 H 1.09001 * 109.49887 * 174.58454 * 11 10 9 33 33 H 1.09004 * 109.49641 * 294.68096 * 11 10 9 34 34 H 1.08995 * 109.46331 * 178.61858 * 12 11 10 35 35 H 1.09000 * 109.45701 * 58.65626 * 12 11 10 36 36 H 1.08997 * 109.47280 * 55.15787 * 15 13 12 37 37 H 1.09004 * 109.47130 * 295.15557 * 15 13 12 38 38 H 0.97004 * 119.99822 * 359.97438 * 16 15 13 39 39 H 1.08002 * 119.99742 * 0.02562 * 20 19 17 40 40 H 1.07994 * 120.00826 * 180.29235 * 21 20 19 41 41 H 0.96995 * 119.99784 * 359.97438 * 24 23 22 42 42 H 0.97004 * 119.99576 * 180.02562 * 24 23 22 43 43 H 1.08007 * 119.99907 * 179.97438 * 26 22 21 44 44 H 1.08002 * 119.99752 * 180.02562 * 27 26 22 45 45 H 1.08994 * 109.58320 * 113.79756 * 28 9 7 46 46 H 1.09001 * 109.58531 * 353.37366 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2223 -0.2729 9 7 1.3701 -2.3625 0.3442 10 6 1.8137 -3.6527 -0.2012 11 6 2.0673 -4.6182 0.9608 12 6 0.8121 -4.7024 1.8322 13 6 0.4978 -3.3213 2.4116 14 1 1.3472 -2.9700 2.9973 15 6 -0.7382 -3.4131 3.3088 16 7 -0.9708 -2.1185 3.9538 17 6 -2.0125 -1.9618 4.7944 18 8 -2.7593 -2.8945 5.0170 19 6 -2.2476 -0.6542 5.4453 20 6 -1.3870 0.4157 5.1932 21 6 -1.6089 1.6350 5.7947 22 6 -2.6883 1.7973 6.6662 23 6 -2.9225 3.1029 7.3169 24 7 -2.6508 4.2446 6.6543 25 16 -3.5391 3.1654 8.9128 26 6 -3.5458 0.7251 6.9227 27 6 -3.3272 -0.4919 6.3157 28 6 0.2262 -2.3410 1.2661 29 1 -0.4850 0.8400 0.0004 30 1 1.0399 -4.0597 -0.8522 31 1 2.7329 -3.5124 -0.7698 32 1 2.3040 -5.6068 0.5673 33 1 2.9024 -4.2550 1.5599 34 1 0.9815 -5.4075 2.6459 35 1 -0.0282 -5.0420 1.2267 36 1 -0.5778 -4.1754 4.0713 37 1 -1.6061 -3.6796 2.7056 38 1 -0.3749 -1.3740 3.7759 39 1 -0.5499 0.2889 4.5227 40 1 -0.9459 2.4639 5.5960 41 1 -2.3012 4.2091 5.7502 42 1 -2.8043 5.1017 7.0818 43 1 -4.3802 0.8503 7.5969 44 1 -3.9905 -1.3209 6.5137 45 1 -0.6769 -2.6410 0.7347 46 1 0.0995 -1.3357 1.6677 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857135392.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:30 Heat of formation + Delta-G solvation = 15.436767 kcal Electronic energy + Delta-G solvation = -27744.537308 eV Core-core repulsion = 23953.279693 eV Total energy + Delta-G solvation = -3791.257615 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.44649 -39.05966 -37.84016 -36.78558 -34.84270 -33.23272 -32.08584 -31.35168 -30.74734 -29.88802 -26.74211 -25.44687 -25.05683 -23.28595 -22.56497 -22.14690 -20.96052 -20.43087 -19.20693 -19.06129 -18.15753 -17.38630 -16.82735 -16.18062 -15.76729 -15.39537 -15.03890 -14.88399 -14.82374 -14.19023 -14.04965 -13.84817 -13.69067 -13.64837 -13.45078 -12.99087 -12.66143 -12.61208 -12.41068 -12.28405 -12.16605 -11.62295 -11.36387 -11.27597 -11.13892 -10.86117 -10.58633 -10.32346 -10.29150 -10.06842 -9.97242 -9.66593 -9.54507 -9.49308 -9.40420 -8.87847 -8.62198 -8.52531 -7.99324 -6.79069 -5.92651 -3.35077 -0.32481 0.94048 0.99808 1.68779 2.64882 2.94794 3.20290 3.21800 3.31476 3.34257 3.59878 3.75262 4.35308 4.38230 4.51187 4.65866 4.92563 5.03602 5.06957 5.21064 5.29953 5.45077 5.47925 5.50272 5.60512 5.71050 5.76964 5.81631 5.87930 6.00847 6.03715 6.06818 6.19255 6.21775 6.30308 6.34417 6.39852 6.42172 6.55924 6.58479 6.72396 6.76514 6.92567 7.18193 7.47306 7.59783 7.66581 8.23822 8.30652 9.07570 9.70748 10.28624 11.15171 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010806 B = 0.002933 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.578391 B = 9545.681642 C =11772.440567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.001 3.999 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.249 4.249 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.143 3.857 11 C -0.133 4.133 12 C -0.100 4.100 13 C -0.129 4.129 14 H 0.070 0.930 15 C 0.130 3.870 16 N -0.710 5.710 17 C 0.551 3.449 18 O -0.539 6.539 19 C -0.092 4.092 20 C -0.087 4.087 21 C -0.090 4.090 22 C -0.097 4.097 23 C 0.399 3.601 24 N -0.759 5.759 25 S -0.556 6.556 26 C -0.056 4.056 27 C -0.067 4.067 28 C 0.179 3.821 29 H 0.252 0.748 30 H 0.018 0.982 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.405 0.595 39 H 0.141 0.859 40 H 0.133 0.867 41 H 0.407 0.593 42 H 0.423 0.577 43 H 0.150 0.850 44 H 0.148 0.852 45 H 0.020 0.980 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.707 2.576 9.473 10.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.728 3.272 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.378 4.378 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.016 3.984 11 C -0.172 4.172 12 C -0.138 4.138 13 C -0.149 4.149 14 H 0.088 0.912 15 C 0.006 3.994 16 N -0.361 5.361 17 C 0.338 3.662 18 O -0.418 6.418 19 C -0.097 4.097 20 C -0.106 4.106 21 C -0.112 4.112 22 C -0.102 4.102 23 C 0.145 3.855 24 N -0.292 5.292 25 S -0.421 6.421 26 C -0.077 4.077 27 C -0.086 4.086 28 C 0.053 3.947 29 H 0.062 0.938 30 H 0.036 0.964 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.241 0.759 39 H 0.158 0.842 40 H 0.151 0.849 41 H 0.239 0.761 42 H 0.258 0.742 43 H 0.167 0.833 44 H 0.166 0.834 45 H 0.038 0.962 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.701 2.209 10.591 11.434 hybrid contribution 1.236 1.700 -1.276 2.458 sum -2.465 3.908 9.315 10.398 Atomic orbital electron populations 1.70059 1.05080 1.25252 1.54238 1.25032 0.95269 0.98264 1.01132 0.86277 0.79568 0.84057 0.77251 1.20228 1.21707 1.21704 1.19256 0.92629 0.84731 1.41232 0.91634 1.44052 1.35909 1.01715 1.49834 1.20942 0.97582 0.86891 0.92952 1.21986 0.97360 0.98996 0.98867 1.21331 0.98379 0.95629 0.98504 1.22159 0.95854 0.98486 0.98432 0.91168 1.21467 0.98932 0.83704 0.95304 1.45993 1.29446 1.15427 1.45240 1.18192 0.81183 0.87450 0.79411 1.90762 1.46388 1.41585 1.63037 1.20341 0.96654 0.94144 0.98546 1.21348 0.98926 0.91929 0.98379 1.21174 0.96748 0.98333 0.94927 1.19155 0.99030 0.92336 0.99686 1.24309 0.79208 0.87429 0.94603 1.43516 1.59045 1.08046 1.18571 1.93359 1.52349 1.95565 1.00832 1.21449 0.98794 0.90620 0.96884 1.21313 0.96052 0.97539 0.93712 1.20803 0.88899 0.97462 0.87567 0.93755 0.96446 0.92875 0.92996 0.92410 0.93312 0.92401 0.91966 0.91374 0.75856 0.84158 0.84942 0.76080 0.74200 0.83274 0.83424 0.96230 0.89574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.77 11.20 55.49 0.62 -23.15 16 2 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 19.74 29.59 -169.99 -5.03 14.71 16 4 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.25 -6.31 9.58 -15.06 -0.14 -6.45 16 8 H 0.07 1.66 7.88 -52.49 -0.41 1.24 16 9 N -0.59 -13.66 2.99 -172.32 -0.52 -14.17 16 10 C 0.14 2.80 6.52 -3.71 -0.02 2.77 16 11 C -0.13 -2.12 6.08 -26.61 -0.16 -2.28 16 12 C -0.10 -1.53 5.17 -26.69 -0.14 -1.67 16 13 C -0.13 -2.12 2.38 -90.50 -0.21 -2.34 16 14 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 15 C 0.13 1.97 5.07 -4.04 -0.02 1.95 16 16 N -0.71 -10.31 5.28 -61.21 -0.32 -10.64 16 17 C 0.55 8.25 7.78 -12.28 -0.10 8.15 16 18 O -0.54 -9.57 16.33 5.33 0.09 -9.48 16 19 C -0.09 -1.14 5.88 -104.90 -0.62 -1.75 16 20 C -0.09 -0.92 9.52 -39.25 -0.37 -1.30 16 21 C -0.09 -0.80 9.31 -39.22 -0.37 -1.17 16 22 C -0.10 -0.94 5.74 -104.94 -0.60 -1.54 16 23 C 0.40 3.72 7.04 -12.38 -0.09 3.64 16 24 N -0.76 -4.01 8.77 32.71 0.29 -3.73 16 25 S -0.56 -7.45 29.90 -107.50 -3.21 -10.66 16 26 C -0.06 -0.58 9.40 -39.23 -0.37 -0.95 16 27 C -0.07 -0.76 9.58 -39.25 -0.38 -1.14 16 28 C 0.18 3.77 4.39 -3.71 -0.02 3.75 16 29 H 0.25 6.43 8.31 -40.82 -0.34 6.09 16 30 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 1.03 7.93 -51.93 -0.41 0.61 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.40 5.56 5.72 -40.82 -0.23 5.33 16 39 H 0.14 1.41 6.39 -52.49 -0.34 1.07 16 40 H 0.13 0.84 7.57 -52.49 -0.40 0.44 16 41 H 0.41 1.25 7.97 -40.82 -0.33 0.93 16 42 H 0.42 1.68 8.81 -40.82 -0.36 1.32 16 43 H 0.15 1.47 7.53 -52.48 -0.40 1.07 16 44 H 0.15 1.62 7.64 -52.49 -0.40 1.22 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.09 1.95 5.26 -51.93 -0.27 1.68 16 LS Contribution 388.00 15.07 5.85 5.85 Total: -1.00 -32.45 388.00 -12.42 -44.87 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -6.48 Total: 6.78 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -3.69 Total: -0.38 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: 0.07 Total: -51.68 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.03 Total: 14.71 kcal Atomic # 16 Polarization: -7.45 SS G_CDS: -3.21 Total: -10.66 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.45 -12.42 -44.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857135392.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.306 kcal (2) G-P(sol) polarization free energy of solvation -32.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds