Wall clock time and date at job start Wed Apr 1 2020 04:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00088 * 2 1 4 4 H 1.48501 * 109.47067 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47309 * 300.00495 * 3 2 1 6 6 H 1.48504 * 109.47140 * 60.00524 * 3 2 1 7 7 C 1.38813 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00523 * 163.07163 * 7 2 1 9 9 N 1.36940 * 119.99868 * 343.07589 * 7 2 1 10 10 C 1.46929 * 120.62938 * 151.81104 * 9 7 2 11 11 C 1.53190 * 108.77488 * 126.41614 * 10 9 7 12 12 C 1.53040 * 109.31765 * 54.63168 * 11 10 9 13 13 C 1.53038 * 109.53505 * 298.63850 * 12 11 10 14 14 H 1.08996 * 109.52424 * 301.39317 * 13 12 11 15 15 C 1.53004 * 109.49483 * 181.31471 * 13 12 11 16 16 N 1.46504 * 109.47242 * 175.16197 * 15 13 12 17 17 C 1.34770 * 120.00242 * 179.97438 * 16 15 13 18 18 O 1.21537 * 119.99874 * 359.97438 * 17 16 15 19 19 C 1.47949 * 119.99968 * 180.02562 * 17 16 15 20 20 C 1.39605 * 119.99470 * 359.72475 * 19 17 16 21 21 C 1.37755 * 120.00954 * 179.72572 * 20 19 17 22 22 C 1.39673 * 119.98808 * 0.57283 * 21 20 19 23 23 C 1.47742 * 120.00372 * 179.68192 * 22 21 20 24 24 N 1.34776 * 120.00268 * 35.02249 * 23 22 21 25 25 S 1.71202 * 119.99558 * 215.01830 * 23 22 21 26 26 C 1.39670 * 119.98455 * 359.70141 * 22 21 20 27 27 C 1.37743 * 119.99664 * 359.97438 * 26 22 21 28 28 C 1.46927 * 120.63085 * 331.83307 * 9 7 2 29 29 H 0.96996 * 120.00281 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.58523 * 246.19842 * 10 9 7 31 31 H 1.08996 * 109.58670 * 6.48354 * 10 9 7 32 32 H 1.09001 * 109.49887 * 174.58454 * 11 10 9 33 33 H 1.09004 * 109.49641 * 294.68096 * 11 10 9 34 34 H 1.08995 * 109.46331 * 178.61858 * 12 11 10 35 35 H 1.09000 * 109.45701 * 58.65626 * 12 11 10 36 36 H 1.08997 * 109.47280 * 55.15787 * 15 13 12 37 37 H 1.09004 * 109.47130 * 295.15557 * 15 13 12 38 38 H 0.97004 * 119.99822 * 359.97438 * 16 15 13 39 39 H 1.08002 * 119.99742 * 0.02562 * 20 19 17 40 40 H 1.07994 * 120.00826 * 180.29235 * 21 20 19 41 41 H 0.96995 * 119.99784 * 359.97438 * 24 23 22 42 42 H 0.97004 * 119.99576 * 180.02562 * 24 23 22 43 43 H 1.08007 * 119.99907 * 179.97438 * 26 22 21 44 44 H 1.08002 * 119.99752 * 180.02562 * 27 26 22 45 45 H 1.08994 * 109.58320 * 113.79756 * 28 9 7 46 46 H 1.09001 * 109.58531 * 353.37366 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2223 -0.2729 9 7 1.3701 -2.3625 0.3442 10 6 1.8137 -3.6527 -0.2012 11 6 2.0673 -4.6182 0.9608 12 6 0.8121 -4.7024 1.8322 13 6 0.4978 -3.3213 2.4116 14 1 1.3472 -2.9700 2.9973 15 6 -0.7382 -3.4131 3.3088 16 7 -0.9708 -2.1185 3.9538 17 6 -2.0125 -1.9618 4.7944 18 8 -2.7593 -2.8945 5.0170 19 6 -2.2476 -0.6542 5.4453 20 6 -1.3870 0.4157 5.1932 21 6 -1.6089 1.6350 5.7947 22 6 -2.6883 1.7973 6.6662 23 6 -2.9225 3.1029 7.3169 24 7 -2.6508 4.2446 6.6543 25 16 -3.5391 3.1654 8.9128 26 6 -3.5458 0.7251 6.9227 27 6 -3.3272 -0.4919 6.3157 28 6 0.2262 -2.3410 1.2661 29 1 -0.4850 0.8400 0.0004 30 1 1.0399 -4.0597 -0.8522 31 1 2.7329 -3.5124 -0.7698 32 1 2.3040 -5.6068 0.5673 33 1 2.9024 -4.2550 1.5599 34 1 0.9815 -5.4075 2.6459 35 1 -0.0282 -5.0420 1.2267 36 1 -0.5778 -4.1754 4.0713 37 1 -1.6061 -3.6796 2.7056 38 1 -0.3749 -1.3740 3.7759 39 1 -0.5499 0.2889 4.5227 40 1 -0.9459 2.4639 5.5960 41 1 -2.3012 4.2091 5.7502 42 1 -2.8043 5.1017 7.0818 43 1 -4.3802 0.8503 7.5969 44 1 -3.9905 -1.3209 6.5137 45 1 -0.6769 -2.6410 0.7347 46 1 0.0995 -1.3357 1.6677 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857135392.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:29 Heat of formation + Delta-G solvation = -4.854706 kcal Electronic energy + Delta-G solvation = -27745.417212 eV Core-core repulsion = 23953.279693 eV Total energy + Delta-G solvation = -3792.137519 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.46779 -40.11373 -39.25702 -37.58932 -36.22335 -34.84814 -33.17131 -32.21274 -32.12338 -31.42573 -27.81847 -27.19006 -26.21818 -24.17408 -23.87496 -23.36557 -22.30900 -21.56700 -20.62788 -19.80506 -19.14932 -18.66312 -18.19715 -17.28509 -16.92865 -16.60009 -16.37810 -15.97430 -15.83378 -15.71455 -15.33551 -15.07058 -14.87898 -14.64293 -14.48345 -14.47305 -14.01072 -13.77240 -13.68324 -13.56890 -13.25519 -12.89099 -12.87171 -12.54357 -12.47564 -12.19683 -12.14620 -11.94408 -11.77852 -11.54174 -11.38666 -11.08743 -11.01593 -10.52493 -10.39476 -10.21985 -10.05494 -9.45443 -9.01831 -8.62774 -7.82605 -5.28808 -1.16714 0.07643 0.18243 0.81134 1.47139 1.53066 1.62218 1.66942 2.07981 2.20527 2.54845 2.65522 3.00150 3.29100 3.55382 3.60824 3.71358 3.72701 4.01301 4.08267 4.09744 4.15087 4.21112 4.36877 4.48231 4.54677 4.65524 4.81392 4.82150 4.88337 4.89953 4.95650 5.04728 5.05657 5.15712 5.17732 5.23025 5.34818 5.37241 5.40146 5.46661 5.55411 5.57753 5.70508 5.80063 5.90806 6.43063 6.43465 7.07039 7.19447 7.89270 8.42552 9.22983 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010806 B = 0.002933 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.578391 B = 9545.681642 C =11772.440567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.041 4.041 3 Si 0.960 3.040 4 H -0.275 1.275 5 H -0.300 1.300 6 H -0.275 1.275 7 C -0.264 4.264 8 H 0.061 0.939 9 N -0.611 5.611 10 C 0.135 3.865 11 C -0.122 4.122 12 C -0.100 4.100 13 C -0.112 4.112 14 H 0.073 0.927 15 C 0.136 3.864 16 N -0.708 5.708 17 C 0.550 3.450 18 O -0.573 6.573 19 C -0.107 4.107 20 C -0.088 4.088 21 C -0.076 4.076 22 C -0.096 4.096 23 C 0.433 3.567 24 N -0.722 5.722 25 S -0.657 6.657 26 C -0.056 4.056 27 C -0.071 4.071 28 C 0.188 3.812 29 H 0.251 0.749 30 H 0.008 0.992 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.077 0.923 37 H 0.053 0.947 38 H 0.409 0.591 39 H 0.147 0.853 40 H 0.168 0.832 41 H 0.425 0.575 42 H 0.435 0.565 43 H 0.151 0.849 44 H 0.144 0.856 45 H -0.014 1.014 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.095 3.463 9.590 10.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.237 4.237 3 Si 0.789 3.211 4 H -0.200 1.200 5 H -0.227 1.227 6 H -0.201 1.201 7 C -0.394 4.394 8 H 0.079 0.921 9 N -0.334 5.334 10 C 0.010 3.990 11 C -0.161 4.161 12 C -0.138 4.138 13 C -0.132 4.132 14 H 0.092 0.908 15 C 0.012 3.988 16 N -0.359 5.359 17 C 0.338 3.662 18 O -0.454 6.454 19 C -0.111 4.111 20 C -0.107 4.107 21 C -0.098 4.098 22 C -0.101 4.101 23 C 0.172 3.828 24 N -0.252 5.252 25 S -0.522 6.522 26 C -0.077 4.077 27 C -0.090 4.090 28 C 0.063 3.937 29 H 0.060 0.940 30 H 0.026 0.974 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.246 0.754 39 H 0.165 0.835 40 H 0.185 0.815 41 H 0.261 0.739 42 H 0.272 0.728 43 H 0.169 0.831 44 H 0.162 0.838 45 H 0.004 0.996 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.053 3.127 10.674 11.310 hybrid contribution 0.777 1.459 -1.522 2.247 sum -1.275 4.586 9.151 10.315 Atomic orbital electron populations 1.70202 1.06317 1.25747 1.55206 1.25683 0.95950 1.00966 1.01129 0.85331 0.78401 0.80287 0.77119 1.19954 1.22738 1.20123 1.19501 0.92702 0.86005 1.41213 0.92133 1.44338 1.36127 1.02317 1.50663 1.21111 0.96949 0.86492 0.94488 1.21866 0.97599 0.99248 0.97341 1.21361 0.97919 0.95200 0.99306 1.21920 0.96382 0.98198 0.96734 0.90845 1.21352 0.97648 0.84507 0.95265 1.45980 1.29526 1.15369 1.44995 1.18579 0.80518 0.88095 0.78989 1.90737 1.47469 1.42961 1.64266 1.20210 0.97942 0.93486 0.99495 1.21451 0.98690 0.92013 0.98556 1.21457 0.96320 0.98604 0.93371 1.19221 0.99138 0.92199 0.99559 1.23839 0.78081 0.88226 0.92702 1.43474 1.55354 1.07528 1.18893 1.93652 1.57595 1.95980 1.05005 1.21472 0.99105 0.90481 0.96632 1.21294 0.95938 0.97928 0.93844 1.20609 0.87182 0.97666 0.88278 0.93983 0.97383 0.93183 0.90070 0.92372 0.90177 0.92754 0.90468 0.92818 0.75359 0.83546 0.81461 0.73867 0.72828 0.83132 0.83783 0.99568 0.91410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -49.34 11.20 21.65 0.24 -49.10 16 2 C -0.04 -2.09 4.92 84.86 0.42 -1.67 16 3 Si 0.96 39.95 29.59 68.60 2.03 41.98 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.30 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.28 -10.71 7.11 99.48 0.71 -10.00 16 7 C -0.26 -13.41 9.58 84.03 0.81 -12.61 16 8 H 0.06 3.07 7.88 -2.91 -0.02 3.04 16 9 N -0.61 -28.30 2.99 -699.09 -2.09 -30.39 16 10 C 0.14 5.24 6.52 86.36 0.56 5.81 16 11 C -0.12 -3.61 6.08 30.67 0.19 -3.43 16 12 C -0.10 -2.83 5.17 30.62 0.16 -2.67 16 13 C -0.11 -3.58 2.38 -10.72 -0.03 -3.61 16 14 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 15 C 0.14 4.05 5.07 86.38 0.44 4.49 16 16 N -0.71 -20.32 5.28 -465.87 -2.46 -22.78 16 17 C 0.55 16.46 7.78 86.82 0.68 17.13 16 18 O -0.57 -20.64 16.33 -3.83 -0.06 -20.70 16 19 C -0.11 -2.57 5.88 -20.04 -0.12 -2.69 16 20 C -0.09 -1.70 9.52 22.49 0.21 -1.49 16 21 C -0.08 -1.11 9.31 22.50 0.21 -0.90 16 22 C -0.10 -1.64 5.74 -20.07 -0.12 -1.76 16 23 C 0.43 7.09 7.04 86.76 0.61 7.70 16 24 N -0.72 -5.01 8.77 -50.43 -0.44 -5.45 16 25 S -0.66 -17.55 29.90 -56.49 -1.69 -19.24 16 26 C -0.06 -1.11 9.40 22.50 0.21 -0.90 16 27 C -0.07 -1.59 9.58 22.49 0.22 -1.38 16 28 C 0.19 8.03 4.39 86.36 0.38 8.41 16 29 H 0.25 12.81 8.31 -92.71 -0.77 12.03 16 30 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 31 H 0.05 1.92 7.93 -2.39 -0.02 1.90 16 32 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.06 1.74 8.14 -2.39 -0.02 1.73 16 34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 38 H 0.41 11.01 5.72 -92.71 -0.53 10.48 16 39 H 0.15 2.65 6.39 -2.91 -0.02 2.63 16 40 H 0.17 1.26 7.57 -2.91 -0.02 1.24 16 41 H 0.43 0.58 7.97 -92.71 -0.74 -0.16 16 42 H 0.44 1.97 8.81 -92.71 -0.82 1.15 16 43 H 0.15 2.97 7.53 -2.91 -0.02 2.95 16 44 H 0.14 3.26 7.64 -2.91 -0.02 3.24 16 45 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 46 H 0.07 3.11 5.26 -2.39 -0.01 3.10 16 Total: -1.00 -72.77 388.00 -0.70 -73.47 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: -1.05 Total: 21.76 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 4.82 Total: 10.45 kcal Atomic # 7 Polarization: -102.97 SS G_CDS: -4.75 Total: -107.73 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.06 Total: -20.70 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Atomic # 16 Polarization: -17.55 SS G_CDS: -1.69 Total: -19.24 kcal Total: -72.77 -0.70 -73.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857135392.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.615 kcal (2) G-P(sol) polarization free energy of solvation -72.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds