Wall clock time and date at job start Wed Apr 1 2020 04:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 120.00029 * 2 1 4 4 H 1.48501 * 109.47060 * 272.94450 * 3 2 1 5 5 H 1.48498 * 109.47013 * 32.93826 * 3 2 1 6 6 H 1.48492 * 109.47134 * 152.94230 * 3 2 1 7 7 C 1.38813 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99887 * 339.35061 * 7 2 1 9 9 N 1.36934 * 119.99755 * 159.34486 * 7 2 1 10 10 C 1.46926 * 120.63429 * 332.63062 * 9 7 2 11 11 C 1.53198 * 108.77441 * 233.58847 * 10 9 7 12 12 C 1.53039 * 109.31231 * 305.36298 * 11 10 9 13 13 C 1.53045 * 109.53713 * 61.36800 * 12 11 10 14 14 H 1.09002 * 109.49527 * 58.58424 * 13 12 11 15 15 C 1.52999 * 109.49502 * 178.65071 * 13 12 11 16 16 N 1.46502 * 109.46759 * 184.93698 * 15 13 12 17 17 C 1.34782 * 119.99915 * 179.97438 * 16 15 13 18 18 O 1.21542 * 119.99944 * 0.02562 * 17 16 15 19 19 C 1.47945 * 120.00058 * 179.97438 * 17 16 15 20 20 C 1.39605 * 119.99261 * 359.72990 * 19 17 16 21 21 C 1.37755 * 120.00725 * 179.72194 * 20 19 17 22 22 C 1.39667 * 119.98851 * 0.57502 * 21 20 19 23 23 C 1.47748 * 120.00619 * 179.68118 * 22 21 20 24 24 N 1.34779 * 120.00012 * 35.01523 * 23 22 21 25 25 S 1.71193 * 120.00039 * 215.02230 * 23 22 21 26 26 C 1.39672 * 119.98869 * 359.69527 * 22 21 20 27 27 C 1.37749 * 119.98898 * 0.02562 * 26 22 21 28 28 C 1.46933 * 120.62914 * 152.61298 * 9 7 2 29 29 H 0.97001 * 119.99856 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.58348 * 113.79864 * 10 9 7 31 31 H 1.08998 * 109.70069 * 353.44227 * 10 9 7 32 32 H 1.08997 * 109.49426 * 185.41191 * 11 10 9 33 33 H 1.09001 * 109.52327 * 65.33341 * 11 10 9 34 34 H 1.08996 * 109.46247 * 301.34904 * 12 11 10 35 35 H 1.09001 * 109.44841 * 181.37890 * 12 11 10 36 36 H 1.09005 * 109.47207 * 304.93123 * 15 13 12 37 37 H 1.08993 * 109.47421 * 64.93405 * 15 13 12 38 38 H 0.96996 * 120.00323 * 359.97438 * 16 15 13 39 39 H 1.07999 * 119.99806 * 0.02562 * 20 19 17 40 40 H 1.07995 * 120.00279 * 180.25427 * 21 20 19 41 41 H 0.97003 * 119.99686 * 0.02562 * 24 23 22 42 42 H 0.96995 * 119.99684 * 180.02562 * 24 23 22 43 43 H 1.07995 * 119.99991 * 179.97438 * 26 22 21 44 44 H 1.07999 * 119.99117 * 179.97438 * 27 26 22 45 45 H 1.09006 * 109.58492 * 6.62460 * 28 9 7 46 46 H 1.08997 * 109.58410 * 246.20507 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4354 2.0824 -1.3982 5 1 1.4801 2.6339 0.7613 6 1 3.5774 1.4230 0.6368 7 6 2.0103 -1.2021 0.0005 8 1 1.5224 -2.1073 0.3308 9 7 3.3136 -1.2404 -0.4178 10 6 3.8173 -0.2594 -1.3887 11 6 4.4623 -1.0098 -2.5583 12 6 5.5290 -1.9659 -2.0197 13 6 4.8753 -2.9908 -1.0900 14 1 4.1088 -3.5406 -1.6362 15 6 5.9370 -3.9665 -0.5785 16 7 5.2935 -5.0160 0.2157 17 6 6.0378 -5.9930 0.7707 18 8 7.2429 -6.0031 0.6127 19 6 5.3881 -7.0526 1.5733 20 6 4.0047 -7.0371 1.7603 21 6 3.3988 -8.0267 2.5027 22 6 4.1700 -9.0388 3.0784 23 6 3.5213 -10.0964 3.8806 24 7 2.2973 -10.5459 3.5395 25 16 4.3243 -10.7509 5.2436 26 6 5.5547 -9.0509 2.8958 27 6 6.1593 -8.0642 2.1485 28 6 4.2351 -2.2629 0.0962 29 1 -0.4850 0.8401 -0.0004 30 1 4.5597 0.3797 -0.9108 31 1 2.9923 0.3506 -1.7565 32 1 4.9247 -0.2947 -3.2386 33 1 3.6999 -1.5782 -3.0912 34 1 6.2781 -1.3996 -1.4664 35 1 6.0064 -2.4831 -2.8520 36 1 6.4542 -4.4175 -1.4255 37 1 6.6549 -3.4300 0.0417 38 1 4.3319 -5.0078 0.3421 39 1 3.4089 -6.2519 1.3188 40 1 2.3282 -8.0169 2.6439 41 1 1.8425 -10.1752 2.7670 42 1 1.8713 -11.2399 4.0664 43 1 6.1513 -9.8332 3.3412 44 1 7.2300 -8.0733 2.0076 45 1 3.6841 -2.9767 0.7086 46 1 5.0115 -1.7872 0.6953 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857135396.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:35 Heat of formation + Delta-G solvation = 22.307666 kcal Electronic energy + Delta-G solvation = -27282.231554 eV Core-core repulsion = 23491.271883 eV Total energy + Delta-G solvation = -3790.959671 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.63966 -39.26330 -38.15014 -36.91775 -35.16425 -33.24611 -32.13851 -31.50634 -30.97260 -30.64635 -26.98041 -25.59794 -25.21413 -23.44778 -22.73507 -22.05023 -21.50450 -20.63150 -19.51613 -19.18735 -18.34462 -17.53612 -16.77898 -16.37528 -15.90656 -15.60698 -15.43670 -15.14909 -15.05350 -14.47800 -14.18719 -13.97572 -13.86635 -13.79548 -13.51762 -13.29155 -12.86317 -12.80872 -12.66022 -12.47913 -12.20899 -11.79335 -11.70611 -11.56469 -11.41977 -10.88980 -10.70094 -10.62903 -10.27278 -10.16324 -9.93871 -9.73984 -9.65314 -9.56321 -9.52006 -9.13940 -8.69644 -8.62449 -8.07941 -7.07126 -6.04366 -3.40469 -0.45519 0.79657 0.83876 1.59588 2.48003 2.81993 2.96862 3.25893 3.41334 3.43143 3.45668 3.62939 4.22222 4.34734 4.44890 4.45494 4.72035 4.75810 4.88964 5.05192 5.11842 5.14914 5.18887 5.33438 5.44386 5.53528 5.60207 5.66701 5.69990 5.72267 5.86148 5.92549 5.95341 6.01560 6.02578 6.18691 6.22053 6.26981 6.29513 6.31884 6.46542 6.47641 6.60420 6.63055 6.88081 7.33522 7.85598 8.00558 8.21920 8.83730 9.62708 10.00595 11.11398 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.013453 B = 0.002277 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.891006 B =12291.746164 C =13855.307422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.884 3.116 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.271 1.271 7 C -0.263 4.263 8 H 0.084 0.916 9 N -0.605 5.605 10 C 0.123 3.877 11 C -0.134 4.134 12 C -0.101 4.101 13 C -0.120 4.120 14 H 0.078 0.922 15 C 0.127 3.873 16 N -0.716 5.716 17 C 0.552 3.448 18 O -0.535 6.535 19 C -0.096 4.096 20 C -0.089 4.089 21 C -0.090 4.090 22 C -0.094 4.094 23 C 0.396 3.604 24 N -0.759 5.759 25 S -0.549 6.549 26 C -0.056 4.056 27 C -0.066 4.066 28 C 0.156 3.844 29 H 0.263 0.737 30 H 0.025 0.975 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.403 0.597 39 H 0.140 0.860 40 H 0.134 0.866 41 H 0.406 0.594 42 H 0.424 0.576 43 H 0.150 0.850 44 H 0.148 0.852 45 H 0.058 0.942 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.633 -17.872 -0.268 19.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.175 4.175 3 Si 0.714 3.286 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.196 1.196 7 C -0.391 4.391 8 H 0.102 0.898 9 N -0.329 5.329 10 C -0.002 4.002 11 C -0.173 4.173 12 C -0.139 4.139 13 C -0.141 4.141 14 H 0.097 0.903 15 C 0.003 3.997 16 N -0.368 5.368 17 C 0.338 3.662 18 O -0.413 6.413 19 C -0.101 4.101 20 C -0.108 4.108 21 C -0.112 4.112 22 C -0.099 4.099 23 C 0.141 3.859 24 N -0.292 5.292 25 S -0.414 6.414 26 C -0.077 4.077 27 C -0.085 4.085 28 C 0.029 3.971 29 H 0.073 0.927 30 H 0.043 0.957 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.240 0.760 39 H 0.158 0.842 40 H 0.152 0.848 41 H 0.238 0.762 42 H 0.259 0.741 43 H 0.168 0.832 44 H 0.166 0.834 45 H 0.077 0.923 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 7.732 -18.249 0.529 19.827 hybrid contribution -1.083 1.331 -0.727 1.864 sum 6.649 -16.918 -0.198 18.179 Atomic orbital electron populations 1.69828 1.05745 1.26667 1.52799 1.25267 0.95216 0.97663 0.99327 0.86944 0.80037 0.84576 0.77031 1.21596 1.23159 1.19564 1.18862 0.84918 0.94700 1.40580 0.89810 1.44326 1.08552 1.33329 1.46672 1.21355 0.97290 0.92028 0.89527 1.21993 0.98032 0.98576 0.98721 1.21345 0.97781 0.96753 0.98020 1.21964 0.96971 0.95915 0.99212 0.90325 1.21510 0.95720 0.87762 0.94719 1.46016 1.11485 1.26686 1.52585 1.18222 0.86774 0.81614 0.79544 1.90784 1.13905 1.75963 1.60632 1.20306 0.93932 0.96461 0.99360 1.21317 0.93717 0.98362 0.97403 1.21192 0.99880 0.94049 0.96082 1.19182 0.94875 0.95876 0.99961 1.24315 0.84736 0.85507 0.91339 1.43498 1.16052 1.38585 1.31081 1.93418 1.66757 1.63471 1.17749 1.21478 0.92350 0.98682 0.95210 1.21322 1.01310 0.91777 0.94105 1.20932 0.92448 0.91274 0.92416 0.92707 0.95741 0.91002 0.92630 0.91710 0.92243 0.92695 0.91457 0.91174 0.76013 0.84199 0.84771 0.76191 0.74133 0.83202 0.83406 0.92326 0.95738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.77 13.97 55.49 0.78 -26.00 16 2 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 3 Si 0.88 21.73 24.35 -169.99 -4.14 17.59 16 4 H -0.29 -6.84 6.62 56.52 0.37 -6.47 16 5 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 6 H -0.27 -6.57 6.63 56.52 0.37 -6.19 16 7 C -0.26 -6.88 10.04 -15.06 -0.15 -7.03 16 8 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 9 N -0.61 -13.32 2.77 -172.32 -0.48 -13.80 16 10 C 0.12 2.54 4.20 -3.71 -0.02 2.52 16 11 C -0.13 -2.17 6.08 -26.61 -0.16 -2.33 16 12 C -0.10 -1.39 5.17 -26.69 -0.14 -1.53 16 13 C -0.12 -1.66 2.37 -90.50 -0.21 -1.88 16 14 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 15 C 0.13 1.54 5.07 -4.04 -0.02 1.52 16 16 N -0.72 -8.02 5.28 -61.22 -0.32 -8.34 16 17 C 0.55 6.73 7.78 -12.28 -0.10 6.63 16 18 O -0.53 -8.24 16.33 5.33 0.09 -8.15 16 19 C -0.10 -0.94 5.88 -104.90 -0.62 -1.55 16 20 C -0.09 -0.69 9.52 -39.25 -0.37 -1.06 16 21 C -0.09 -0.59 9.31 -39.22 -0.37 -0.95 16 22 C -0.09 -0.73 5.74 -104.94 -0.60 -1.33 16 23 C 0.40 3.06 7.04 -12.37 -0.09 2.97 16 24 N -0.76 -2.68 8.77 32.71 0.29 -2.39 16 25 S -0.55 -6.74 29.90 -107.50 -3.21 -9.96 16 26 C -0.06 -0.48 9.40 -39.23 -0.37 -0.84 16 27 C -0.07 -0.61 9.58 -39.25 -0.38 -0.99 16 28 C 0.16 2.71 5.60 -3.71 -0.02 2.69 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.02 0.51 7.07 -51.93 -0.37 0.14 16 31 H 0.07 1.64 4.50 -51.93 -0.23 1.41 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.40 3.91 5.72 -40.82 -0.23 3.67 16 39 H 0.14 0.89 6.39 -52.49 -0.34 0.55 16 40 H 0.13 0.52 7.57 -52.49 -0.40 0.12 16 41 H 0.41 0.36 7.97 -40.82 -0.33 0.03 16 42 H 0.42 1.05 8.81 -40.82 -0.36 0.69 16 43 H 0.15 1.24 7.53 -52.49 -0.40 0.84 16 44 H 0.15 1.34 7.64 -52.49 -0.40 0.94 16 45 H 0.06 0.97 7.14 -51.93 -0.37 0.60 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 381.57 15.07 5.75 5.75 Total: -1.00 -35.24 381.57 -11.36 -46.60 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -6.41 Total: 1.27 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -3.70 Total: -2.57 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: 0.26 Total: -50.54 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.09 Total: -8.15 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.14 Total: 17.59 kcal Atomic # 16 Polarization: -6.74 SS G_CDS: -3.21 Total: -9.96 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.24 -11.36 -46.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857135396.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.910 kcal (2) G-P(sol) polarization free energy of solvation -35.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds