Wall clock time and date at job start Wed Apr 1 2020 04:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 120.00029 * 2 1 4 4 H 1.48501 * 109.47060 * 272.94450 * 3 2 1 5 5 H 1.48498 * 109.47013 * 32.93826 * 3 2 1 6 6 H 1.48492 * 109.47134 * 152.94230 * 3 2 1 7 7 C 1.38813 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99887 * 339.35061 * 7 2 1 9 9 N 1.36934 * 119.99755 * 159.34486 * 7 2 1 10 10 C 1.46926 * 120.63429 * 332.63062 * 9 7 2 11 11 C 1.53198 * 108.77441 * 233.58847 * 10 9 7 12 12 C 1.53039 * 109.31231 * 305.36298 * 11 10 9 13 13 C 1.53045 * 109.53713 * 61.36800 * 12 11 10 14 14 H 1.09002 * 109.49527 * 58.58424 * 13 12 11 15 15 C 1.52999 * 109.49502 * 178.65071 * 13 12 11 16 16 N 1.46502 * 109.46759 * 184.93698 * 15 13 12 17 17 C 1.34782 * 119.99915 * 179.97438 * 16 15 13 18 18 O 1.21542 * 119.99944 * 0.02562 * 17 16 15 19 19 C 1.47945 * 120.00058 * 179.97438 * 17 16 15 20 20 C 1.39605 * 119.99261 * 359.72990 * 19 17 16 21 21 C 1.37755 * 120.00725 * 179.72194 * 20 19 17 22 22 C 1.39667 * 119.98851 * 0.57502 * 21 20 19 23 23 C 1.47748 * 120.00619 * 179.68118 * 22 21 20 24 24 N 1.34779 * 120.00012 * 35.01523 * 23 22 21 25 25 S 1.71193 * 120.00039 * 215.02230 * 23 22 21 26 26 C 1.39672 * 119.98869 * 359.69527 * 22 21 20 27 27 C 1.37749 * 119.98898 * 0.02562 * 26 22 21 28 28 C 1.46933 * 120.62914 * 152.61298 * 9 7 2 29 29 H 0.97001 * 119.99856 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.58348 * 113.79864 * 10 9 7 31 31 H 1.08998 * 109.70069 * 353.44227 * 10 9 7 32 32 H 1.08997 * 109.49426 * 185.41191 * 11 10 9 33 33 H 1.09001 * 109.52327 * 65.33341 * 11 10 9 34 34 H 1.08996 * 109.46247 * 301.34904 * 12 11 10 35 35 H 1.09001 * 109.44841 * 181.37890 * 12 11 10 36 36 H 1.09005 * 109.47207 * 304.93123 * 15 13 12 37 37 H 1.08993 * 109.47421 * 64.93405 * 15 13 12 38 38 H 0.96996 * 120.00323 * 359.97438 * 16 15 13 39 39 H 1.07999 * 119.99806 * 0.02562 * 20 19 17 40 40 H 1.07995 * 120.00279 * 180.25427 * 21 20 19 41 41 H 0.97003 * 119.99686 * 0.02562 * 24 23 22 42 42 H 0.96995 * 119.99684 * 180.02562 * 24 23 22 43 43 H 1.07995 * 119.99991 * 179.97438 * 26 22 21 44 44 H 1.07999 * 119.99117 * 179.97438 * 27 26 22 45 45 H 1.09006 * 109.58492 * 6.62460 * 28 9 7 46 46 H 1.08997 * 109.58410 * 246.20507 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4354 2.0824 -1.3982 5 1 1.4801 2.6339 0.7613 6 1 3.5774 1.4230 0.6368 7 6 2.0103 -1.2021 0.0005 8 1 1.5224 -2.1073 0.3308 9 7 3.3136 -1.2404 -0.4178 10 6 3.8173 -0.2594 -1.3887 11 6 4.4623 -1.0098 -2.5583 12 6 5.5290 -1.9659 -2.0197 13 6 4.8753 -2.9908 -1.0900 14 1 4.1088 -3.5406 -1.6362 15 6 5.9370 -3.9665 -0.5785 16 7 5.2935 -5.0160 0.2157 17 6 6.0378 -5.9930 0.7707 18 8 7.2429 -6.0031 0.6127 19 6 5.3881 -7.0526 1.5733 20 6 4.0047 -7.0371 1.7603 21 6 3.3988 -8.0267 2.5027 22 6 4.1700 -9.0388 3.0784 23 6 3.5213 -10.0964 3.8806 24 7 2.2973 -10.5459 3.5395 25 16 4.3243 -10.7509 5.2436 26 6 5.5547 -9.0509 2.8958 27 6 6.1593 -8.0642 2.1485 28 6 4.2351 -2.2629 0.0962 29 1 -0.4850 0.8401 -0.0004 30 1 4.5597 0.3797 -0.9108 31 1 2.9923 0.3506 -1.7565 32 1 4.9247 -0.2947 -3.2386 33 1 3.6999 -1.5782 -3.0912 34 1 6.2781 -1.3996 -1.4664 35 1 6.0064 -2.4831 -2.8520 36 1 6.4542 -4.4175 -1.4255 37 1 6.6549 -3.4300 0.0417 38 1 4.3319 -5.0078 0.3421 39 1 3.4089 -6.2519 1.3188 40 1 2.3282 -8.0169 2.6439 41 1 1.8425 -10.1752 2.7670 42 1 1.8713 -11.2399 4.0664 43 1 6.1513 -9.8332 3.3412 44 1 7.2300 -8.0733 2.0076 45 1 3.6841 -2.9767 0.7086 46 1 5.0115 -1.7872 0.6953 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857135396.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:34 Heat of formation + Delta-G solvation = -2.327673 kcal Electronic energy + Delta-G solvation = -27283.299822 eV Core-core repulsion = 23491.271883 eV Total energy + Delta-G solvation = -3792.027939 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.46240 -40.15216 -39.42937 -37.57437 -36.39911 -34.77503 -33.15007 -32.63772 -32.16006 -31.79991 -27.93948 -27.16426 -26.31916 -24.14080 -23.70503 -23.52546 -22.66188 -21.56537 -20.78782 -19.78650 -19.15810 -18.67742 -18.18378 -17.28936 -17.23732 -16.66223 -16.57862 -15.98226 -15.83681 -15.76802 -15.49836 -15.09648 -14.90937 -14.84236 -14.59849 -14.47518 -14.17453 -13.94133 -13.70944 -13.55188 -13.30988 -13.23976 -13.14774 -12.55388 -12.46142 -12.17572 -12.13856 -12.08351 -11.68260 -11.58236 -11.38259 -11.24872 -11.04767 -10.64730 -10.38125 -10.19142 -10.05595 -9.44883 -9.01642 -8.90730 -8.15382 -5.45473 -1.14513 0.09491 0.21070 0.83367 1.29820 1.42136 1.49485 1.68923 2.07098 2.21054 2.42551 2.67194 3.03791 3.07414 3.33060 3.57874 3.71164 3.76195 3.87735 3.97996 4.03203 4.11113 4.23000 4.26811 4.40254 4.52044 4.55866 4.66130 4.80421 4.81720 4.85109 4.86403 4.97829 5.00875 5.08031 5.10947 5.15182 5.18169 5.27702 5.31219 5.39150 5.39914 5.57777 5.59959 5.88643 5.94503 6.14529 6.44236 6.93700 7.09279 7.64756 8.06218 9.04044 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.013453 B = 0.002277 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.891006 B =12291.746164 C =13855.307422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.034 4.034 3 Si 0.939 3.061 4 H -0.277 1.277 5 H -0.316 1.316 6 H -0.265 1.265 7 C -0.241 4.241 8 H 0.063 0.937 9 N -0.619 5.619 10 C 0.115 3.885 11 C -0.126 4.126 12 C -0.099 4.099 13 C -0.104 4.104 14 H 0.078 0.922 15 C 0.135 3.865 16 N -0.710 5.710 17 C 0.553 3.447 18 O -0.572 6.572 19 C -0.107 4.107 20 C -0.086 4.086 21 C -0.075 4.075 22 C -0.097 4.097 23 C 0.434 3.566 24 N -0.720 5.720 25 S -0.665 6.665 26 C -0.058 4.058 27 C -0.073 4.073 28 C 0.150 3.850 29 H 0.260 0.740 30 H 0.027 0.973 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.412 0.588 39 H 0.157 0.843 40 H 0.170 0.830 41 H 0.427 0.573 42 H 0.435 0.565 43 H 0.146 0.854 44 H 0.142 0.858 45 H 0.062 0.938 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.747 -18.235 -1.832 19.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.229 4.229 3 Si 0.769 3.231 4 H -0.204 1.204 5 H -0.245 1.245 6 H -0.190 1.190 7 C -0.371 4.371 8 H 0.081 0.919 9 N -0.344 5.344 10 C -0.010 4.010 11 C -0.165 4.165 12 C -0.137 4.137 13 C -0.124 4.124 14 H 0.097 0.903 15 C 0.011 3.989 16 N -0.362 5.362 17 C 0.340 3.660 18 O -0.453 6.453 19 C -0.112 4.112 20 C -0.105 4.105 21 C -0.097 4.097 22 C -0.102 4.102 23 C 0.172 3.828 24 N -0.251 5.251 25 S -0.531 6.531 26 C -0.080 4.080 27 C -0.092 4.092 28 C 0.026 3.974 29 H 0.069 0.931 30 H 0.045 0.955 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.250 0.750 39 H 0.175 0.825 40 H 0.188 0.812 41 H 0.263 0.737 42 H 0.271 0.729 43 H 0.164 0.836 44 H 0.160 0.840 45 H 0.081 0.919 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 7.824 -18.636 -1.079 20.241 hybrid contribution -1.215 1.383 -0.344 1.873 sum 6.609 -17.253 -1.423 18.530 Atomic orbital electron populations 1.69941 1.07192 1.26983 1.56054 1.25823 0.95731 1.00568 1.00746 0.86038 0.78697 0.81060 0.77309 1.20421 1.24507 1.18990 1.18906 0.86565 0.93618 1.37966 0.91918 1.44491 1.07851 1.34543 1.47482 1.21425 0.96598 0.92175 0.90823 1.21898 0.98415 0.99099 0.97135 1.21370 0.97071 0.96344 0.98956 1.21745 0.97158 0.95888 0.97607 0.90329 1.21363 0.94948 0.87544 0.95032 1.45957 1.11876 1.26213 1.52134 1.18535 0.86345 0.81872 0.79206 1.90765 1.15528 1.76914 1.62106 1.20200 0.94933 0.96107 0.99928 1.21511 0.92813 0.98954 0.97199 1.21509 1.01411 0.92468 0.94309 1.19235 0.94723 0.96287 0.99927 1.23854 0.85223 0.84553 0.89190 1.43455 1.14145 1.36846 1.30639 1.93737 1.69523 1.67174 1.22674 1.21457 0.93001 0.98421 0.95074 1.21285 1.01203 0.92124 0.94590 1.21132 0.91787 0.90491 0.94041 0.93132 0.95491 0.93653 0.90237 0.92433 0.91681 0.89705 0.90457 0.91742 0.75040 0.82520 0.81222 0.73662 0.72901 0.83587 0.84040 0.91938 0.95652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.50 13.97 21.65 0.30 -57.20 16 2 C -0.03 -1.89 5.23 84.86 0.44 -1.44 16 3 Si 0.94 45.18 24.35 68.60 1.67 46.85 16 4 H -0.28 -12.67 6.62 99.48 0.66 -12.01 16 5 H -0.32 -15.68 7.11 99.48 0.71 -14.97 16 6 H -0.27 -12.32 6.63 99.48 0.66 -11.66 16 7 C -0.24 -12.58 10.04 84.03 0.84 -11.74 16 8 H 0.06 3.48 8.06 -2.91 -0.02 3.45 16 9 N -0.62 -26.37 2.77 -699.09 -1.94 -28.31 16 10 C 0.11 4.49 4.20 86.36 0.36 4.85 16 11 C -0.13 -3.70 6.08 30.67 0.19 -3.52 16 12 C -0.10 -2.35 5.17 30.62 0.16 -2.19 16 13 C -0.10 -2.56 2.37 -10.72 -0.03 -2.58 16 14 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 15 C 0.13 2.91 5.07 86.38 0.44 3.35 16 16 N -0.71 -14.25 5.28 -465.87 -2.46 -16.71 16 17 C 0.55 12.67 7.78 86.82 0.68 13.34 16 18 O -0.57 -17.24 16.33 -3.85 -0.06 -17.30 16 19 C -0.11 -1.92 5.88 -20.04 -0.12 -2.04 16 20 C -0.09 -1.07 9.52 22.49 0.21 -0.85 16 21 C -0.08 -0.70 9.31 22.50 0.21 -0.49 16 22 C -0.10 -1.28 5.74 -20.07 -0.12 -1.40 16 23 C 0.43 5.86 7.04 86.76 0.61 6.47 16 24 N -0.72 -2.58 8.77 -50.43 -0.44 -3.02 16 25 S -0.67 -16.77 29.90 -56.49 -1.69 -18.46 16 26 C -0.06 -0.95 9.40 22.50 0.21 -0.74 16 27 C -0.07 -1.31 9.58 22.48 0.22 -1.10 16 28 C 0.15 4.91 5.60 86.36 0.48 5.39 16 29 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 30 H 0.03 1.05 7.07 -2.39 -0.02 1.03 16 31 H 0.05 2.01 4.50 -2.39 -0.01 2.00 16 32 H 0.08 1.96 8.14 -2.39 -0.02 1.95 16 33 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.41 6.85 5.72 -92.71 -0.53 6.31 16 39 H 0.16 1.41 6.39 -2.91 -0.02 1.39 16 40 H 0.17 0.37 7.57 -2.91 -0.02 0.35 16 41 H 0.43 -1.34 7.97 -92.71 -0.74 -2.08 16 42 H 0.43 0.79 8.81 -92.71 -0.82 -0.03 16 43 H 0.15 2.50 7.53 -2.91 -0.02 2.48 16 44 H 0.14 2.66 7.64 -2.91 -0.02 2.64 16 45 H 0.06 1.96 7.14 -2.38 -0.02 1.94 16 46 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -80.17 381.57 -0.96 -81.14 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -1.14 Total: 7.70 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: 4.79 Total: 5.31 kcal Atomic # 7 Polarization: -100.70 SS G_CDS: -4.54 Total: -105.24 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.06 Total: -17.30 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.67 Total: 46.85 kcal Atomic # 16 Polarization: -16.77 SS G_CDS: -1.69 Total: -18.46 kcal Total: -80.17 -0.96 -81.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857135396.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.808 kcal (2) G-P(sol) polarization free energy of solvation -80.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds