Wall clock time and date at job start Wed Apr 1 2020 05:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86795 * 120.00013 * 2 1 4 4 H 1.48500 * 109.46988 * 269.99680 * 3 2 1 5 5 H 1.48495 * 109.47212 * 29.99900 * 3 2 1 6 6 H 1.48501 * 109.47127 * 149.99721 * 3 2 1 7 7 C 1.38659 * 119.99591 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00651 * 0.02562 * 7 2 1 9 9 O 1.34828 * 119.99674 * 180.02562 * 7 2 1 10 10 C 1.35754 * 117.00357 * 185.41730 * 9 7 2 11 11 C 1.38899 * 120.06225 * 5.70735 * 10 9 7 12 12 C 1.38083 * 119.92682 * 179.97438 * 11 10 9 13 13 C 1.38325 * 120.07091 * 0.02562 * 12 11 10 14 14 C 1.38277 * 120.13571 * 359.97438 * 13 12 11 15 15 C 1.50695 * 119.96413 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.47409 * 90.00019 * 15 14 13 17 17 O 1.20824 * 119.99547 * 0.02562 * 16 15 14 18 18 O 1.34226 * 120.00331 * 179.97438 * 16 15 14 19 19 C 1.45201 * 117.00263 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47396 * 180.02562 * 19 18 16 21 21 H 1.09006 * 109.62695 * 328.49684 * 20 19 18 22 22 C 1.53057 * 109.63388 * 88.89358 * 20 19 18 23 23 C 1.51789 * 110.74685 * 34.98039 * 22 20 19 24 24 C 1.51779 * 113.81235 * 66.81172 * 23 22 20 25 25 C 1.52983 * 110.88103 * 293.00810 * 24 23 22 26 26 N 1.47196 * 108.65352 * 86.46089 * 25 24 23 27 27 C 1.33371 * 120.43036 * 287.99815 * 26 25 24 28 28 O 1.21284 * 119.88912 * 180.31784 * 27 26 25 29 29 C 1.38126 * 120.07017 * 0.27752 * 14 13 12 30 30 H 0.96994 * 120.00119 * 0.02562 * 1 2 3 31 31 H 1.07994 * 120.04055 * 359.97438 * 11 10 9 32 32 H 1.07999 * 119.96426 * 180.02562 * 12 11 10 33 33 H 1.07999 * 119.93183 * 179.97438 * 13 12 11 34 34 H 1.09003 * 109.47063 * 329.99919 * 15 14 13 35 35 H 1.09003 * 109.47263 * 209.99878 * 15 14 13 36 36 H 1.09003 * 109.46423 * 60.00135 * 19 18 16 37 37 H 1.08999 * 109.46938 * 300.00350 * 19 18 16 38 38 H 1.08998 * 109.22592 * 274.65397 * 22 20 19 39 39 H 1.08995 * 109.18376 * 155.28401 * 22 20 19 40 40 H 1.09003 * 108.62019 * 305.69656 * 23 22 20 41 41 H 1.09002 * 108.61626 * 187.93470 * 23 22 20 42 42 H 1.09002 * 109.19477 * 53.36440 * 24 23 22 43 43 H 1.09005 * 109.19918 * 172.64340 * 24 23 22 44 44 H 1.09005 * 109.60504 * 206.21321 * 25 24 23 45 45 H 1.08998 * 109.60467 * 326.69978 * 25 24 23 46 46 H 0.97005 * 119.77935 * 108.01714 * 26 25 24 47 47 H 1.08002 * 120.03248 * 179.70830 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4470 2.6526 0.7000 6 1 3.5471 1.4401 0.7001 7 6 2.0088 -1.2009 0.0005 8 1 1.4688 -2.1362 0.0005 9 8 3.3570 -1.2009 0.0011 10 6 3.9735 -2.4051 -0.1126 11 6 3.2237 -3.5517 -0.3415 12 6 3.8536 -4.7750 -0.4572 13 6 5.2297 -4.8594 -0.3449 14 6 5.9788 -3.7197 -0.1171 15 6 7.4778 -3.8159 0.0041 16 6 8.1035 -3.6507 -1.3570 17 8 7.4039 -3.4725 -2.3258 18 8 9.4379 -3.7004 -1.4928 19 6 9.9709 -3.5339 -2.8331 20 6 11.4978 -3.6203 -2.7893 21 1 11.8591 -3.2347 -1.8359 22 6 11.9353 -5.0778 -2.9537 23 6 11.0041 -5.8154 -3.8985 24 6 11.0717 -5.3243 -5.3331 25 6 10.5314 -3.8976 -5.4470 26 7 11.6268 -2.9555 -5.1653 27 6 12.0901 -2.8102 -3.9232 28 8 12.9890 -2.0269 -3.7012 29 6 5.3542 -2.4938 0.0048 30 1 -0.4850 0.8400 -0.0004 31 1 2.1492 -3.4866 -0.4288 32 1 3.2713 -5.6669 -0.6355 33 1 5.7200 -5.8174 -0.4353 34 1 7.7475 -4.7901 0.4121 35 1 7.8399 -3.0310 0.6681 36 1 9.6727 -2.5611 -3.2243 37 1 9.5811 -4.3204 -3.4794 38 1 11.9216 -5.5686 -1.9806 39 1 12.9484 -5.1045 -3.3548 40 1 9.9813 -5.7005 -3.5394 41 1 11.2587 -6.8752 -3.8811 42 1 12.1082 -5.3430 -5.6698 43 1 10.4781 -5.9840 -5.9662 44 1 10.1541 -3.7289 -6.4557 45 1 9.7284 -3.7518 -4.7245 46 1 12.0139 -2.4368 -5.8879 47 1 5.9394 -1.6046 0.1874 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873615019.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:25 Heat of formation + Delta-G solvation = -107.158070 kcal Electronic energy + Delta-G solvation = -30114.733579 eV Core-core repulsion = 25843.114231 eV Total energy + Delta-G solvation = -4271.619348 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.45269 -40.29281 -39.14746 -37.69082 -36.93347 -36.21801 -34.44959 -32.55833 -32.32269 -31.99778 -29.55879 -28.83460 -27.41362 -25.35617 -25.08658 -24.48639 -22.40964 -21.73939 -20.86066 -20.13075 -19.78448 -17.84913 -17.74391 -17.59750 -17.56113 -17.13833 -16.62705 -15.91277 -15.73742 -15.24871 -14.88704 -14.75085 -14.55306 -14.37305 -14.12719 -13.99028 -13.83160 -13.58690 -13.51927 -13.16990 -12.84268 -12.65751 -12.46756 -12.26380 -12.21299 -12.06554 -11.78668 -11.38631 -11.36990 -11.26272 -11.07926 -10.91123 -10.83597 -10.76634 -10.58210 -10.42264 -10.16929 -10.08824 -9.52285 -9.44278 -8.88718 -8.23810 -7.41338 -6.42609 -4.09433 1.80609 2.15205 2.21629 2.23910 2.63699 2.89233 3.21791 3.26087 3.40213 3.91152 4.10648 4.15313 4.23307 4.24593 4.42748 4.46676 4.54787 4.65292 4.73770 4.82862 4.86617 4.94965 4.95244 5.06716 5.12837 5.18934 5.24399 5.31890 5.39288 5.45538 5.49163 5.56533 5.62676 5.64266 5.77610 5.80048 6.07077 6.19839 6.28475 6.35028 6.47512 6.73154 6.78271 7.02853 7.14660 7.26681 7.55244 7.74800 7.77500 7.78499 8.02043 8.92746 9.54888 10.65081 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.015015 B = 0.002252 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.293288 B =12431.265644 C =13314.720326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.389 4.389 8 H 0.106 0.894 9 O -0.217 6.217 10 C 0.160 3.840 11 C -0.213 4.213 12 C -0.076 4.076 13 C -0.186 4.186 14 C -0.047 4.047 15 C -0.064 4.064 16 C 0.460 3.540 17 O -0.489 6.489 18 O -0.359 6.359 19 C 0.047 3.953 20 C -0.107 4.107 21 H 0.122 0.878 22 C -0.109 4.109 23 C -0.138 4.138 24 C -0.142 4.142 25 C 0.074 3.926 26 N -0.721 5.721 27 C 0.529 3.471 28 O -0.543 6.543 29 C -0.173 4.173 30 H 0.279 0.721 31 H 0.134 0.866 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.099 0.901 46 H 0.403 0.597 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.740 -13.351 -7.817 27.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.465 4.465 8 H 0.124 0.876 9 O -0.122 6.122 10 C 0.108 3.892 11 C -0.233 4.233 12 C -0.094 4.094 13 C -0.205 4.205 14 C -0.047 4.047 15 C -0.102 4.102 16 C 0.302 3.698 17 O -0.374 6.374 18 O -0.277 6.277 19 C -0.026 4.026 20 C -0.128 4.128 21 H 0.140 0.860 22 C -0.146 4.146 23 C -0.175 4.175 24 C -0.180 4.180 25 C -0.050 4.050 26 N -0.373 5.373 27 C 0.315 3.685 28 O -0.420 6.420 29 C -0.192 4.192 30 H 0.090 0.910 31 H 0.151 0.849 32 H 0.130 0.870 33 H 0.125 0.875 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.091 0.909 37 H 0.125 0.875 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.099 0.901 44 H 0.111 0.889 45 H 0.117 0.883 46 H 0.239 0.761 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 22.801 -12.621 -7.838 27.214 hybrid contribution 0.137 0.864 -0.609 1.066 sum 22.938 -11.756 -8.446 27.124 Atomic orbital electron populations 1.69642 1.05560 1.28504 1.48021 1.24462 0.95023 0.98829 0.95655 0.86188 0.80343 0.81438 0.78993 1.19904 1.20751 1.18335 1.20756 0.76851 0.96621 1.52244 0.87644 1.83588 1.22624 1.25585 1.80448 1.19009 0.91410 0.85731 0.93091 1.21339 1.01264 0.92313 1.08351 1.20750 0.94087 0.96739 0.97830 1.20431 0.93995 0.96819 1.09283 1.18653 0.91602 0.93421 1.01013 1.20271 0.92706 1.05890 0.91294 1.23877 0.79947 0.73228 0.92749 1.90721 1.62576 1.43192 1.40944 1.86510 1.24459 1.83579 1.33102 1.23947 0.92466 1.03607 0.82566 1.21643 0.94147 0.97587 0.99457 0.86008 1.21300 0.99823 0.92373 1.01127 1.21359 1.00878 1.00689 0.94559 1.21829 1.02710 0.96141 0.97310 1.22512 0.90024 0.88551 1.03883 1.45918 1.37899 1.43956 1.09551 1.20192 0.82477 0.81779 0.84084 1.90783 1.30578 1.36934 1.83719 1.19966 0.92130 0.96961 1.10154 0.91042 0.84868 0.87019 0.87523 0.86980 0.86970 0.90911 0.87522 0.89746 0.91037 0.90740 0.90873 0.90953 0.90084 0.88948 0.88325 0.76067 0.86634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.40 13.96 55.48 0.77 -24.62 16 2 C 0.06 1.79 5.49 -17.51 -0.10 1.69 16 3 Si 0.90 21.81 28.62 -169.99 -4.86 16.95 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.26 -6.26 7.11 56.52 0.40 -5.85 16 7 C -0.39 -10.97 9.90 30.89 0.31 -10.66 16 8 H 0.11 3.02 5.53 -52.49 -0.29 2.73 16 9 O -0.22 -5.76 8.59 0.04 0.00 -5.76 16 10 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 11 C -0.21 -4.59 9.13 -39.39 -0.36 -4.95 16 12 C -0.08 -1.35 10.04 -39.61 -0.40 -1.75 16 13 C -0.19 -3.02 9.70 -39.53 -0.38 -3.40 16 14 C -0.05 -0.76 4.37 -104.65 -0.46 -1.22 16 15 C -0.06 -0.76 5.94 -29.04 -0.17 -0.93 16 16 C 0.46 6.05 7.95 36.01 0.29 6.33 16 17 O -0.49 -8.13 15.78 -18.75 -0.30 -8.42 16 18 O -0.36 -3.92 10.19 -39.25 -0.40 -4.32 16 19 C 0.05 0.44 3.05 37.16 0.11 0.56 16 20 C -0.11 -0.90 2.84 -91.39 -0.26 -1.16 16 21 H 0.12 1.09 8.08 -51.93 -0.42 0.67 16 22 C -0.11 -0.67 5.48 -27.32 -0.15 -0.82 16 23 C -0.14 -0.71 5.19 -27.97 -0.15 -0.86 16 24 C -0.14 -0.63 5.73 -27.36 -0.16 -0.79 16 25 C 0.07 0.39 6.39 -3.67 -0.02 0.37 16 26 N -0.72 -5.11 5.27 -59.90 -0.32 -5.43 16 27 C 0.53 5.28 6.45 -11.26 -0.07 5.21 16 28 O -0.54 -7.67 17.92 5.55 0.10 -7.57 16 29 C -0.17 -3.41 9.64 -39.40 -0.38 -3.79 16 30 H 0.28 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.13 3.00 5.71 -52.49 -0.30 2.70 16 32 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.11 0.99 8.08 -51.93 -0.42 0.57 16 35 H 0.11 1.13 8.08 -51.93 -0.42 0.71 16 36 H 0.07 0.77 7.60 -51.93 -0.39 0.38 16 37 H 0.11 0.87 2.79 -51.93 -0.15 0.73 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.45 7.86 -51.93 -0.41 0.04 16 40 H 0.07 0.45 5.57 -51.93 -0.29 0.16 16 41 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.34 8.05 -51.93 -0.42 -0.08 16 43 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.10 0.65 3.64 -51.93 -0.19 0.46 16 46 H 0.40 2.43 8.91 -40.82 -0.36 2.07 16 47 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 380.55 15.07 5.73 5.73 Total: -1.00 -34.36 380.55 -8.03 -42.39 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -6.15 Total: 3.78 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -2.61 Total: -12.74 kcal Atomic # 7 Polarization: -30.51 SS G_CDS: 0.46 Total: -30.05 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.60 Total: -26.07 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.86 Total: 16.95 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.36 -8.03 -42.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873615019.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.772 kcal (2) G-P(sol) polarization free energy of solvation -34.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds