Wall clock time and date at job start Wed Apr 1 2020 04:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34230 * 116.99824 * 2 1 4 4 O 1.20820 * 120.00297 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99603 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.46768 * 180.02562 * 5 3 2 7 7 N 1.46504 * 109.47201 * 179.97438 * 6 5 3 8 8 C 1.36929 * 119.99860 * 264.46844 * 7 6 5 9 9 H 1.08003 * 120.00075 * 140.19638 * 8 7 6 10 10 C 1.38812 * 120.00485 * 320.19665 * 8 7 6 11 11 N 1.31619 * 119.99657 * 340.45853 * 10 8 7 12 12 Si 1.86792 * 120.00391 * 160.45730 * 10 8 7 13 13 H 1.48499 * 109.47039 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47418 * 120.00219 * 12 10 8 15 15 H 1.48504 * 109.47137 * 239.99882 * 12 10 8 16 16 C 1.46501 * 119.99652 * 84.46685 * 7 6 5 17 17 C 1.50701 * 109.47042 * 90.00223 * 16 7 6 18 18 C 1.35340 * 126.14111 * 95.49431 * 17 16 7 19 19 C 1.39912 * 107.92602 * 180.24227 * 18 17 16 20 20 N 1.30881 * 108.24324 * 359.55824 * 19 18 17 21 21 N 1.35207 * 126.14441 * 275.47328 * 17 16 7 22 22 C 1.40244 * 126.05149 * 359.97438 * 21 17 16 23 23 C 1.38833 * 120.04006 * 315.54430 * 22 21 17 24 24 C 1.38109 * 119.95543 * 179.72354 * 23 22 21 25 25 C 1.38488 * 120.04105 * 0.54424 * 24 23 22 26 26 F 1.35102 * 119.95659 * 179.74449 * 25 24 23 27 27 C 1.38481 * 120.08179 * 359.73285 * 25 24 23 28 28 C 1.38106 * 120.04212 * 359.97438 * 27 25 24 29 29 H 1.08994 * 109.46957 * 299.99435 * 1 2 3 30 30 H 1.08998 * 109.46862 * 60.00433 * 1 2 3 31 31 H 1.09000 * 109.46467 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47577 * 60.00539 * 5 3 2 33 33 H 1.08993 * 109.47241 * 299.99574 * 5 3 2 34 34 H 1.09001 * 109.47379 * 60.00074 * 6 5 3 35 35 H 1.09001 * 109.47299 * 300.00246 * 6 5 3 36 36 H 0.97000 * 120.00292 * 180.02562 * 11 10 8 37 37 H 1.08994 * 109.47477 * 330.00236 * 16 7 6 38 38 H 1.08996 * 109.46735 * 209.99856 * 16 7 6 39 39 H 1.07991 * 126.03692 * 359.97438 * 18 17 16 40 40 H 1.08002 * 125.87621 * 179.73351 * 19 18 17 41 41 H 1.07995 * 120.02141 * 359.97438 * 23 22 21 42 42 H 1.08003 * 119.97720 * 180.25460 * 24 23 22 43 43 H 1.07998 * 119.97883 * 179.97438 * 27 25 24 44 44 H 1.08005 * 120.02162 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4631 2.8188 0.0002 8 6 6.1408 2.9682 1.1807 9 1 7.0626 2.4301 1.3460 10 6 5.6432 3.8112 2.1649 11 7 4.7675 4.7427 1.8523 12 14 6.2164 3.6235 3.9327 13 1 7.1954 2.5104 4.0202 14 1 6.8589 4.8849 4.3814 15 1 5.0500 3.3257 4.8023 16 6 6.2010 2.7357 -1.2627 17 6 6.3799 4.1195 -1.8319 18 6 7.4644 4.9136 -1.6737 19 6 7.2239 6.1117 -2.3550 20 7 6.0415 6.0367 -2.9110 21 7 5.4861 4.7906 -2.5928 22 6 4.2265 4.3217 -2.9933 23 6 4.0863 3.0244 -3.4672 24 6 2.8440 2.5626 -3.8557 25 6 1.7407 3.3965 -3.7835 26 9 0.5272 2.9447 -4.1689 27 6 1.8797 4.6928 -3.3164 28 6 3.1193 5.1561 -2.9213 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 3.9558 0.7810 -0.8908 33 1 3.9564 0.7806 0.8891 34 1 3.6108 3.2357 0.8907 35 1 3.6100 3.2368 -0.8893 36 1 4.4200 5.3321 2.5399 37 1 5.6433 2.1214 -1.9695 38 1 7.1782 2.2873 -1.0836 39 1 8.3559 4.6677 -1.1161 40 1 7.8992 6.9525 -2.4145 41 1 4.9473 2.3754 -3.5281 42 1 2.7338 1.5521 -4.2206 43 1 1.0183 5.3417 -3.2611 44 1 3.2273 6.1670 -2.5567 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877710377.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:44 Heat of formation + Delta-G solvation = 4.764249 kcal Electronic energy + Delta-G solvation = -31893.893867 eV Core-core repulsion = 27535.960281 eV Total energy + Delta-G solvation = -4357.933586 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -48.77540 -40.95398 -39.97946 -38.56281 -36.46178 -35.71946 -32.86337 -31.91178 -31.47374 -31.01190 -29.22799 -28.18334 -27.42521 -25.76139 -24.30689 -23.13062 -22.88859 -21.46814 -20.38066 -20.10463 -19.36491 -17.56688 -17.41943 -17.01244 -16.41875 -16.24120 -16.19171 -16.03899 -15.48315 -15.04093 -14.54007 -14.38472 -14.17943 -13.89709 -13.67672 -13.47176 -13.38024 -13.20627 -13.02761 -12.83127 -12.50688 -12.43209 -12.16957 -11.95700 -11.90767 -11.39243 -11.33183 -11.03273 -10.96450 -10.70694 -10.52498 -10.35627 -10.24248 -10.03170 -9.98588 -9.84084 -9.37752 -9.04992 -8.63472 -8.22258 -7.68155 -6.82314 -5.96205 -3.58014 1.06156 1.29265 2.54035 2.69812 2.96658 3.11014 3.27976 3.37016 3.38277 3.50302 3.67407 4.34369 4.36303 4.78170 4.88045 5.14763 5.18437 5.23187 5.24966 5.26992 5.31115 5.39603 5.48273 5.52889 5.67414 5.71969 5.81139 5.82280 5.94396 6.05036 6.13214 6.21220 6.24308 6.28134 6.39071 6.44008 6.52125 6.73088 6.82625 6.88227 6.90042 7.28864 7.53762 7.68500 7.78197 8.20025 8.28551 8.34434 8.97056 9.56921 10.15021 11.05306 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.007899 B = 0.006171 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3543.852679 B = 4536.319731 C = 7116.179963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.369 6.369 3 C 0.459 3.541 4 O -0.502 6.502 5 C -0.133 4.133 6 C 0.162 3.838 7 N -0.561 5.561 8 C -0.277 4.277 9 H 0.068 0.932 10 C 0.025 3.975 11 N -0.870 5.870 12 Si 0.898 3.102 13 H -0.273 1.273 14 H -0.288 1.288 15 H -0.287 1.287 16 C 0.185 3.815 17 C 0.108 3.892 18 C -0.265 4.265 19 C 0.053 3.947 20 N -0.314 5.314 21 N -0.329 5.329 22 C 0.174 3.826 23 C -0.104 4.104 24 C -0.136 4.136 25 C 0.090 3.910 26 F -0.142 7.142 27 C -0.130 4.130 28 C -0.078 4.078 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.038 0.962 36 H 0.257 0.743 37 H 0.052 0.948 38 H 0.078 0.922 39 H 0.143 0.857 40 H 0.177 0.823 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.165 -6.358 -9.165 11.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.286 6.286 3 C 0.302 3.698 4 O -0.389 6.389 5 C -0.173 4.173 6 C 0.035 3.965 7 N -0.279 5.279 8 C -0.407 4.407 9 H 0.086 0.914 10 C -0.179 4.179 11 N -0.509 5.509 12 Si 0.727 3.273 13 H -0.197 1.197 14 H -0.214 1.214 15 H -0.214 1.214 16 C 0.057 3.943 17 C -0.019 4.019 18 C -0.294 4.294 19 C -0.133 4.133 20 N -0.133 5.133 21 N -0.106 5.106 22 C 0.082 3.918 23 C -0.125 4.125 24 C -0.156 4.156 25 C 0.070 3.930 26 F -0.121 7.121 27 C -0.150 4.150 28 C -0.098 4.098 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.161 0.839 40 H 0.194 0.806 41 H 0.158 0.842 42 H 0.157 0.843 43 H 0.157 0.843 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.441 -5.358 -9.783 12.006 hybrid contribution 0.359 -0.135 1.649 1.693 sum -4.082 -5.493 -8.134 10.630 Atomic orbital electron populations 1.23141 0.77631 1.02880 1.02268 1.86553 1.22571 1.34773 1.84740 1.24378 0.92716 0.80854 0.71892 1.90655 1.67276 1.36188 1.44757 1.22348 0.85000 1.05453 1.04507 1.20766 0.83549 0.88675 1.03503 1.43915 1.01045 1.82442 1.00527 1.19083 1.08804 1.21715 0.91084 0.91406 1.25369 0.98652 0.94184 0.99670 1.70037 1.31642 1.16670 1.32529 0.86325 0.78347 0.77842 0.84825 1.19728 1.21418 1.21351 1.20132 0.98184 0.87232 0.88754 1.22809 0.88270 0.99610 0.91222 1.21133 1.01731 0.95483 1.11056 1.23777 0.94248 0.98504 0.96802 1.77310 1.11107 0.99222 1.25661 1.45536 1.11948 1.12836 1.40320 1.17270 0.82840 0.93230 0.98507 1.20927 0.97944 0.94886 0.98721 1.20857 0.91200 1.00328 1.03197 1.17630 0.80479 0.93455 1.01387 1.91475 1.42227 1.89452 1.88897 1.20955 0.98416 0.94695 1.00913 1.20891 0.90108 1.00851 0.97921 0.92267 0.92271 0.88770 0.89575 0.87900 0.88296 0.94326 0.93274 0.92993 0.90397 0.83922 0.80616 0.84215 0.84285 0.84312 0.84349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 101.05 1.07 1.50 16 2 O -0.37 -5.80 10.57 -39.26 -0.41 -6.21 16 3 C 0.46 8.41 7.96 36.01 0.29 8.69 16 4 O -0.50 -10.64 15.73 -18.75 -0.29 -10.93 16 5 C -0.13 -2.41 6.13 -27.88 -0.17 -2.58 16 6 C 0.16 3.56 4.51 -4.04 -0.02 3.54 16 7 N -0.56 -12.40 2.39 -174.61 -0.42 -12.82 16 8 C -0.28 -6.82 9.44 -15.06 -0.14 -6.96 16 9 H 0.07 1.64 7.90 -52.48 -0.41 1.22 16 10 C 0.02 0.64 4.92 -17.43 -0.09 0.55 16 11 N -0.87 -24.21 11.60 55.49 0.64 -23.56 16 12 Si 0.90 20.44 29.60 -169.99 -5.03 15.41 16 13 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 14 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 16 C 0.19 3.47 5.75 -5.19 -0.03 3.44 16 17 C 0.11 2.13 6.33 -82.14 -0.52 1.61 16 18 C -0.26 -5.05 10.72 -39.99 -0.43 -5.48 16 19 C 0.05 0.96 12.03 -17.33 -0.21 0.75 16 20 N -0.31 -6.25 12.44 30.64 0.38 -5.87 16 21 N -0.33 -6.49 3.69 -6.97 -0.03 -6.52 16 22 C 0.17 3.12 4.52 -83.57 -0.38 2.74 16 23 C -0.10 -1.58 7.89 -39.41 -0.31 -1.89 16 24 C -0.14 -1.89 10.02 -39.54 -0.40 -2.29 16 25 C 0.09 1.36 7.30 -39.40 -0.29 1.07 16 26 F -0.14 -2.10 17.27 2.25 0.04 -2.06 16 27 C -0.13 -2.01 10.02 -39.54 -0.40 -2.40 16 28 C -0.08 -1.35 9.83 -39.41 -0.39 -1.74 16 29 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 30 H 0.06 0.73 8.13 -51.93 -0.42 0.30 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 33 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 34 H 0.10 2.62 5.66 -51.93 -0.29 2.32 16 35 H 0.04 0.86 5.49 -51.93 -0.28 0.58 16 36 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.05 0.84 5.05 -51.93 -0.26 0.58 16 38 H 0.08 1.36 8.04 -51.93 -0.42 0.94 16 39 H 0.14 2.52 8.06 -52.49 -0.42 2.09 16 40 H 0.18 2.47 8.06 -52.49 -0.42 2.05 16 41 H 0.14 1.88 6.25 -52.49 -0.33 1.55 16 42 H 0.14 1.54 8.06 -52.48 -0.42 1.12 16 43 H 0.14 1.83 8.06 -52.49 -0.42 1.40 16 44 H 0.14 2.48 8.06 -52.48 -0.42 2.06 16 LS Contribution 380.22 15.07 5.73 5.73 Total: -1.00 -31.27 380.22 -7.16 -38.44 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -5.36 Total: 7.86 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -2.41 Total: 0.55 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: 0.58 Total: -48.77 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.71 Total: -17.15 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.03 Total: 15.41 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.27 -7.16 -38.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877710377.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.200 kcal (2) G-P(sol) polarization free energy of solvation -31.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds