Wall clock time and date at job start Wed Apr 1 2020 04:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34230 * 116.99824 * 2 1 4 4 O 1.20820 * 120.00297 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99603 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.46768 * 180.02562 * 5 3 2 7 7 N 1.46504 * 109.47201 * 179.97438 * 6 5 3 8 8 C 1.36929 * 119.99860 * 264.46844 * 7 6 5 9 9 H 1.08003 * 120.00075 * 140.19638 * 8 7 6 10 10 C 1.38812 * 120.00485 * 320.19665 * 8 7 6 11 11 N 1.31619 * 119.99657 * 340.45853 * 10 8 7 12 12 Si 1.86792 * 120.00391 * 160.45730 * 10 8 7 13 13 H 1.48499 * 109.47039 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47418 * 120.00219 * 12 10 8 15 15 H 1.48504 * 109.47137 * 239.99882 * 12 10 8 16 16 C 1.46501 * 119.99652 * 84.46685 * 7 6 5 17 17 C 1.50701 * 109.47042 * 90.00223 * 16 7 6 18 18 C 1.35340 * 126.14111 * 95.49431 * 17 16 7 19 19 C 1.39912 * 107.92602 * 180.24227 * 18 17 16 20 20 N 1.30881 * 108.24324 * 359.55824 * 19 18 17 21 21 N 1.35207 * 126.14441 * 275.47328 * 17 16 7 22 22 C 1.40244 * 126.05149 * 359.97438 * 21 17 16 23 23 C 1.38833 * 120.04006 * 315.54430 * 22 21 17 24 24 C 1.38109 * 119.95543 * 179.72354 * 23 22 21 25 25 C 1.38488 * 120.04105 * 0.54424 * 24 23 22 26 26 F 1.35102 * 119.95659 * 179.74449 * 25 24 23 27 27 C 1.38481 * 120.08179 * 359.73285 * 25 24 23 28 28 C 1.38106 * 120.04212 * 359.97438 * 27 25 24 29 29 H 1.08994 * 109.46957 * 299.99435 * 1 2 3 30 30 H 1.08998 * 109.46862 * 60.00433 * 1 2 3 31 31 H 1.09000 * 109.46467 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47577 * 60.00539 * 5 3 2 33 33 H 1.08993 * 109.47241 * 299.99574 * 5 3 2 34 34 H 1.09001 * 109.47379 * 60.00074 * 6 5 3 35 35 H 1.09001 * 109.47299 * 300.00246 * 6 5 3 36 36 H 0.97000 * 120.00292 * 180.02562 * 11 10 8 37 37 H 1.08994 * 109.47477 * 330.00236 * 16 7 6 38 38 H 1.08996 * 109.46735 * 209.99856 * 16 7 6 39 39 H 1.07991 * 126.03692 * 359.97438 * 18 17 16 40 40 H 1.08002 * 125.87621 * 179.73351 * 19 18 17 41 41 H 1.07995 * 120.02141 * 359.97438 * 23 22 21 42 42 H 1.08003 * 119.97720 * 180.25460 * 24 23 22 43 43 H 1.07998 * 119.97883 * 179.97438 * 27 25 24 44 44 H 1.08005 * 120.02162 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4631 2.8188 0.0002 8 6 6.1408 2.9682 1.1807 9 1 7.0626 2.4301 1.3460 10 6 5.6432 3.8112 2.1649 11 7 4.7675 4.7427 1.8523 12 14 6.2164 3.6235 3.9327 13 1 7.1954 2.5104 4.0202 14 1 6.8589 4.8849 4.3814 15 1 5.0500 3.3257 4.8023 16 6 6.2010 2.7357 -1.2627 17 6 6.3799 4.1195 -1.8319 18 6 7.4644 4.9136 -1.6737 19 6 7.2239 6.1117 -2.3550 20 7 6.0415 6.0367 -2.9110 21 7 5.4861 4.7906 -2.5928 22 6 4.2265 4.3217 -2.9933 23 6 4.0863 3.0244 -3.4672 24 6 2.8440 2.5626 -3.8557 25 6 1.7407 3.3965 -3.7835 26 9 0.5272 2.9447 -4.1689 27 6 1.8797 4.6928 -3.3164 28 6 3.1193 5.1561 -2.9213 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 3.9558 0.7810 -0.8908 33 1 3.9564 0.7806 0.8891 34 1 3.6108 3.2357 0.8907 35 1 3.6100 3.2368 -0.8893 36 1 4.4200 5.3321 2.5399 37 1 5.6433 2.1214 -1.9695 38 1 7.1782 2.2873 -1.0836 39 1 8.3559 4.6677 -1.1161 40 1 7.8992 6.9525 -2.4145 41 1 4.9473 2.3754 -3.5281 42 1 2.7338 1.5521 -4.2206 43 1 1.0183 5.3417 -3.2611 44 1 3.2273 6.1670 -2.5567 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877710377.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:43 Heat of formation + Delta-G solvation = -11.316544 kcal Electronic energy + Delta-G solvation = -31894.591183 eV Core-core repulsion = 27535.960281 eV Total energy + Delta-G solvation = -4358.630902 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.95845 -42.37016 -41.37276 -39.81767 -37.98392 -37.24190 -34.26295 -33.66273 -32.95009 -32.28539 -30.77837 -29.50103 -28.59037 -27.43184 -25.89176 -24.37122 -24.21097 -23.06395 -21.77319 -21.52835 -20.80776 -19.01441 -18.78514 -18.42879 -18.01475 -17.57217 -17.49610 -17.35741 -16.77847 -16.63176 -15.97427 -15.82780 -15.56946 -15.34370 -15.11342 -14.77445 -14.71212 -14.60291 -14.45437 -14.10656 -13.89768 -13.84296 -13.56886 -13.34200 -13.14371 -13.05281 -12.80959 -12.75556 -12.41033 -12.22821 -12.07733 -11.95312 -11.76993 -11.58197 -11.49587 -11.41626 -10.75304 -10.54156 -10.25222 -9.67169 -9.06247 -8.64389 -7.86813 -5.50988 -0.20583 0.09084 1.11039 1.27376 1.45353 1.50796 1.59068 1.61012 1.84073 2.05764 2.42421 2.52014 3.14767 3.28387 3.58767 3.69241 3.73349 3.89825 4.02094 4.03499 4.08943 4.24475 4.30777 4.34507 4.36721 4.38651 4.46892 4.58387 4.70748 4.74438 4.79394 4.86559 4.94299 4.96453 4.98974 4.99828 5.18922 5.23135 5.42960 5.44215 5.62858 5.69765 5.78123 5.89762 6.36358 6.45701 6.83141 6.84282 7.12146 7.75721 8.30546 9.11487 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.007899 B = 0.006171 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3543.852679 B = 4536.319731 C = 7116.179963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.464 3.536 4 O -0.538 6.538 5 C -0.124 4.124 6 C 0.172 3.828 7 N -0.572 5.572 8 C -0.266 4.266 9 H 0.076 0.924 10 C -0.026 4.026 11 N -0.910 5.910 12 Si 0.951 3.049 13 H -0.254 1.254 14 H -0.298 1.298 15 H -0.298 1.298 16 C 0.186 3.814 17 C 0.091 3.909 18 C -0.279 4.279 19 C 0.052 3.948 20 N -0.341 5.341 21 N -0.334 5.334 22 C 0.147 3.853 23 C -0.101 4.101 24 C -0.123 4.123 25 C 0.086 3.914 26 F -0.139 7.139 27 C -0.133 4.133 28 C -0.099 4.099 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.135 0.865 32 H 0.120 0.880 33 H 0.105 0.895 34 H 0.051 0.949 35 H 0.030 0.970 36 H 0.245 0.755 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.154 0.846 40 H 0.211 0.789 41 H 0.161 0.839 42 H 0.176 0.824 43 H 0.154 0.846 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.814 -9.199 -10.253 14.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.308 3.692 4 O -0.428 6.428 5 C -0.164 4.164 6 C 0.045 3.955 7 N -0.290 5.290 8 C -0.396 4.396 9 H 0.094 0.906 10 C -0.225 4.225 11 N -0.552 5.552 12 Si 0.780 3.220 13 H -0.178 1.178 14 H -0.225 1.225 15 H -0.225 1.225 16 C 0.059 3.941 17 C -0.036 4.036 18 C -0.308 4.308 19 C -0.134 4.134 20 N -0.161 5.161 21 N -0.112 5.112 22 C 0.055 3.945 23 C -0.121 4.121 24 C -0.142 4.142 25 C 0.066 3.934 26 F -0.117 7.117 27 C -0.152 4.152 28 C -0.119 4.119 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.153 0.847 32 H 0.138 0.862 33 H 0.123 0.877 34 H 0.069 0.931 35 H 0.049 0.951 36 H 0.055 0.945 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.172 0.828 40 H 0.227 0.773 41 H 0.178 0.822 42 H 0.194 0.806 43 H 0.171 0.829 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.083 -8.248 -10.891 14.258 hybrid contribution 0.173 0.700 1.880 2.014 sum -3.910 -7.548 -9.010 12.387 Atomic orbital electron populations 1.23490 0.75464 1.05537 1.02049 1.86522 1.24569 1.32930 1.84015 1.24305 0.92771 0.81045 0.71037 1.90655 1.68017 1.37553 1.46565 1.22106 0.85302 1.02791 1.06183 1.20414 0.83573 0.90688 1.00806 1.43983 1.01064 1.82760 1.01224 1.19378 1.08291 1.20005 0.91930 0.90632 1.25981 0.99388 0.94439 1.02722 1.70206 1.33998 1.18284 1.32706 0.85474 0.77665 0.77636 0.81238 1.17803 1.22546 1.22506 1.20293 0.98988 0.87166 0.87690 1.23039 0.88739 1.00120 0.91704 1.21457 1.02219 0.95905 1.11266 1.24357 0.94057 0.99242 0.95739 1.77261 1.12029 0.99958 1.26804 1.45697 1.12449 1.12662 1.40357 1.17646 0.82286 0.94609 0.99916 1.21142 0.99185 0.93832 0.97991 1.21226 0.89987 1.01561 1.01408 1.17762 0.81018 0.93403 1.01192 1.91485 1.42127 1.89318 1.88811 1.21106 0.98133 0.95528 1.00415 1.20844 0.91223 1.00408 0.99440 0.92861 0.92241 0.84656 0.86219 0.87706 0.93069 0.95126 0.94536 0.90231 0.88810 0.82850 0.77285 0.82190 0.80643 0.82853 0.86275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.81 16 2 O -0.36 -10.47 10.57 -51.42 -0.54 -11.02 16 3 C 0.46 16.33 7.96 71.24 0.57 16.90 16 4 O -0.54 -22.76 15.73 21.98 0.35 -22.42 16 5 C -0.12 -4.26 6.13 29.85 0.18 -4.08 16 6 C 0.17 7.54 4.51 86.38 0.39 7.93 16 7 N -0.57 -24.73 2.39 -706.34 -1.69 -26.42 16 8 C -0.27 -12.88 9.44 84.03 0.79 -12.09 16 9 H 0.08 3.51 7.90 -2.91 -0.02 3.48 16 10 C -0.03 -1.38 4.92 84.86 0.42 -0.96 16 11 N -0.91 -52.55 11.60 21.65 0.25 -52.30 16 12 Si 0.95 42.56 29.60 68.60 2.03 44.59 16 13 H -0.25 -10.48 7.11 99.48 0.71 -9.77 16 14 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 15 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 16 C 0.19 6.59 5.75 85.63 0.49 7.08 16 17 C 0.09 3.53 6.33 41.37 0.26 3.80 16 18 C -0.28 -10.45 10.72 22.01 0.24 -10.22 16 19 C 0.05 1.85 12.03 85.24 1.03 2.87 16 20 N -0.34 -13.70 12.44 -56.97 -0.71 -14.41 16 21 N -0.33 -13.18 3.69 -175.96 -0.65 -13.83 16 22 C 0.15 5.24 4.52 38.08 0.17 5.42 16 23 C -0.10 -2.85 7.89 22.38 0.18 -2.68 16 24 C -0.12 -3.05 10.02 22.30 0.22 -2.82 16 25 C 0.09 2.44 7.30 22.39 0.16 2.60 16 26 F -0.14 -3.82 17.27 44.97 0.78 -3.04 16 27 C -0.13 -4.07 10.02 22.30 0.22 -3.85 16 28 C -0.10 -3.55 9.83 22.38 0.22 -3.33 16 29 H 0.05 1.25 8.13 -2.39 -0.02 1.23 16 30 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 31 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.12 3.29 8.14 -2.39 -0.02 3.27 16 33 H 0.10 3.59 8.14 -2.39 -0.02 3.57 16 34 H 0.05 2.79 5.66 -2.39 -0.01 2.78 16 35 H 0.03 1.37 5.49 -2.39 -0.01 1.36 16 36 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 37 H 0.08 2.33 5.05 -2.39 -0.01 2.32 16 38 H 0.09 3.01 8.04 -2.39 -0.02 2.99 16 39 H 0.15 5.24 8.06 -2.92 -0.02 5.22 16 40 H 0.21 5.61 8.06 -2.91 -0.02 5.58 16 41 H 0.16 3.76 6.25 -2.91 -0.02 3.74 16 42 H 0.18 3.04 8.06 -2.91 -0.02 3.02 16 43 H 0.15 4.06 8.06 -2.91 -0.02 4.04 16 44 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -70.14 380.22 7.59 -62.55 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: 1.04 Total: 27.92 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 6.74 Total: 8.37 kcal Atomic # 7 Polarization: -104.16 SS G_CDS: -2.80 Total: -106.95 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -0.20 Total: -33.44 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.78 Total: -3.04 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -70.14 7.59 -62.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877710377.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.232 kcal (2) G-P(sol) polarization free energy of solvation -70.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds