Wall clock time and date at job start Wed Apr 1 2020 04:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00194 * 2 1 4 4 H 1.48502 * 109.47097 * 240.00175 * 3 2 1 5 5 H 1.48501 * 109.47137 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47284 * 120.00110 * 3 2 1 7 7 C 1.37880 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00376 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00061 * 0.02562 * 7 2 1 10 10 O 1.42902 * 109.47384 * 179.97438 * 9 7 2 11 11 C 1.42900 * 114.00066 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47130 * 179.97438 * 11 10 9 13 13 O 1.45202 * 109.47082 * 65.00268 * 12 11 10 14 14 C 1.34228 * 117.00216 * 179.97438 * 13 12 11 15 15 O 1.20826 * 119.99931 * 359.97438 * 14 13 12 16 16 C 1.50704 * 119.99916 * 179.97438 * 14 13 12 17 17 C 1.50702 * 109.46763 * 179.97438 * 16 14 13 18 18 C 1.38131 * 120.03733 * 264.99858 * 17 16 14 19 19 C 1.38264 * 120.06989 * 179.72420 * 18 17 16 20 20 C 1.38309 * 120.14065 * 0.25958 * 19 18 17 21 21 C 1.38088 * 120.06688 * 0.02562 * 20 19 18 22 22 C 1.38858 * 120.03437 * 85.26052 * 17 16 14 23 23 N 1.39929 * 120.06784 * 0.02562 * 22 17 16 24 24 C 1.46763 * 124.34731 * 270.25303 * 23 22 17 25 25 C 1.54481 * 105.47115 * 197.01762 * 24 23 22 26 26 C 1.54628 * 101.76605 * 334.58774 * 25 24 23 27 27 C 1.34415 * 124.34625 * 89.95742 * 23 22 17 28 28 O 1.21279 * 124.94499 * 359.56839 * 27 23 22 29 29 H 0.96993 * 119.99726 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.47369 * 59.99481 * 9 7 2 31 31 H 1.09005 * 109.46861 * 300.00132 * 9 7 2 32 32 H 1.09005 * 109.46787 * 59.99964 * 11 10 9 33 33 H 1.09003 * 109.47252 * 300.00344 * 11 10 9 34 34 H 1.08998 * 109.47447 * 305.00669 * 12 11 10 35 35 H 1.09000 * 109.47335 * 184.99862 * 12 11 10 36 36 H 1.09001 * 109.46710 * 60.00437 * 16 14 13 37 37 H 1.08995 * 109.47167 * 300.00012 * 16 14 13 38 38 H 1.08002 * 119.96825 * 0.02562 * 18 17 16 39 39 H 1.07994 * 119.93167 * 180.23481 * 19 18 17 40 40 H 1.07999 * 119.96267 * 179.97438 * 20 19 18 41 41 H 1.08007 * 120.02890 * 179.97438 * 21 20 19 42 42 H 1.08999 * 110.24978 * 316.02301 * 24 23 22 43 43 H 1.09007 * 110.24528 * 78.02467 * 24 23 22 44 44 H 1.09003 * 110.96706 * 92.70742 * 25 24 23 45 45 H 1.09000 * 110.96967 * 216.47024 * 25 24 23 46 46 H 1.09000 * 110.48659 * 143.47521 * 26 25 24 47 47 H 1.09006 * 110.48848 * 266.11879 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5854 0.0005 11 6 1.5651 -4.8755 0.0011 12 6 2.6480 -5.9562 0.0004 13 8 3.4001 -5.8885 1.2406 14 6 4.3943 -6.7763 1.3996 15 8 4.6280 -7.5835 0.5315 16 6 5.2190 -6.7661 2.6610 17 6 6.2597 -7.8537 2.5894 18 6 6.0094 -9.0885 3.1557 19 6 6.9615 -10.0886 3.0855 20 6 8.1691 -9.8548 2.4531 21 6 8.4276 -8.6206 1.8901 22 6 7.4733 -7.6139 1.9588 23 7 7.7323 -6.3622 1.3894 24 6 7.4103 -6.0001 0.0041 25 6 8.2451 -4.7354 -0.2959 26 6 8.4426 -4.1449 1.1195 27 6 8.3027 -5.3352 2.0427 28 8 8.6561 -5.3601 3.2025 29 1 -0.4849 0.8400 -0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8903 32 1 0.9446 -4.9827 -0.8887 33 1 0.9452 -4.9822 0.8913 34 1 3.3210 -5.7957 -0.8418 35 1 2.1819 -6.9375 -0.0887 36 1 4.5709 -6.9398 3.5201 37 1 5.7103 -5.7989 2.7660 38 1 5.0672 -9.2745 3.6497 39 1 6.7620 -11.0544 3.5257 40 1 8.9109 -10.6379 2.4003 41 1 9.3710 -8.4385 1.3968 42 1 7.6922 -6.8073 -0.6721 43 1 6.3467 -5.7814 -0.0912 44 1 9.2025 -4.9976 -0.7463 45 1 7.6921 -4.0450 -0.9329 46 1 9.4336 -3.7007 1.2126 47 1 7.6706 -3.4063 1.3359 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884882247.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:09 Heat of formation + Delta-G solvation = -137.342627 kcal Electronic energy + Delta-G solvation = -30652.642646 eV Core-core repulsion = 26379.714398 eV Total energy + Delta-G solvation = -4272.928249 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.30771 -40.24512 -38.96205 -37.11345 -36.55231 -36.05734 -33.58467 -32.90841 -32.77893 -30.32653 -29.59293 -27.97510 -27.74477 -26.89477 -23.39697 -23.12355 -22.41423 -22.11149 -21.86972 -20.76451 -19.78820 -17.75543 -17.69034 -17.16342 -16.67624 -16.49602 -16.27817 -15.93015 -15.68830 -15.41330 -15.06438 -14.83146 -14.61614 -14.34611 -13.93868 -13.81856 -13.62746 -13.48890 -13.25580 -13.21513 -12.90525 -12.79309 -12.48901 -12.27438 -11.98833 -11.71241 -11.66726 -11.55023 -11.46867 -11.20667 -10.98168 -10.88169 -10.79976 -10.47805 -10.41852 -10.10629 -10.08985 -9.18406 -9.14416 -9.12258 -8.94771 -8.90861 -8.25394 -6.15182 -4.17269 0.91932 1.06212 2.20811 2.36485 2.70066 2.74542 3.29458 3.32578 3.35879 3.45996 4.20109 4.28668 4.32268 4.33326 4.52771 4.62333 4.66478 4.74443 4.79801 4.85065 4.93128 5.09803 5.16622 5.17900 5.21421 5.27080 5.30587 5.37723 5.39086 5.45127 5.53575 5.63920 5.68602 5.78668 5.81163 5.87995 6.03060 6.04229 6.17704 6.23457 6.32689 6.53061 6.71638 6.85777 7.01219 7.35738 7.73588 7.79411 7.98817 8.08622 8.47757 8.94455 9.47569 10.96330 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.012432 B = 0.002765 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.645173 B =10124.309584 C =11576.307301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.908 3.092 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.075 3.925 13 O -0.340 6.340 14 C 0.464 3.536 15 O -0.507 6.507 16 C -0.076 4.076 17 C -0.065 4.065 18 C -0.097 4.097 19 C -0.114 4.114 20 C -0.110 4.110 21 C -0.110 4.110 22 C 0.162 3.838 23 N -0.582 5.582 24 C 0.106 3.894 25 C -0.131 4.131 26 C -0.155 4.155 27 C 0.520 3.480 28 O -0.522 6.522 29 H 0.265 0.735 30 H 0.006 0.994 31 H 0.007 0.993 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.117 0.883 37 H 0.111 0.889 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.125 0.875 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.083 0.917 45 H 0.098 0.902 46 H 0.105 0.895 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.035 -19.078 1.979 24.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.554 4.554 8 H 0.084 0.916 9 C 0.121 3.879 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.002 3.998 13 O -0.256 6.256 14 C 0.307 3.693 15 O -0.396 6.396 16 C -0.114 4.114 17 C -0.066 4.066 18 C -0.116 4.116 19 C -0.132 4.132 20 C -0.128 4.128 21 C -0.129 4.129 22 C 0.073 3.927 23 N -0.314 5.314 24 C -0.015 4.015 25 C -0.169 4.169 26 C -0.195 4.195 27 C 0.309 3.691 28 O -0.397 6.397 29 H 0.075 0.925 30 H 0.024 0.976 31 H 0.025 0.975 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.135 0.865 37 H 0.129 0.871 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.143 0.857 42 H 0.100 0.900 43 H 0.092 0.908 44 H 0.101 0.899 45 H 0.116 0.884 46 H 0.123 0.877 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 15.287 -19.179 2.326 24.636 hybrid contribution -0.152 0.750 -0.235 0.801 sum 15.136 -18.429 2.091 23.939 Atomic orbital electron populations 1.69946 1.06117 1.27357 1.50324 1.24947 0.94988 0.99450 0.95064 0.86390 0.79340 0.81854 0.78874 1.19996 1.21130 1.19928 1.20991 0.94020 0.89276 1.51141 0.91575 1.20231 0.88730 0.83448 0.95494 1.87904 1.35353 1.12595 1.95231 1.22322 0.93255 0.85478 1.00591 1.23216 0.93632 0.98815 0.84151 1.86615 1.43366 1.53971 1.41669 1.23379 0.79136 0.78181 0.88631 1.90655 1.67765 1.37870 1.43283 1.20222 0.95578 1.00422 0.95155 1.19511 0.93668 0.94817 0.98613 1.20939 0.99587 0.91868 0.99208 1.21166 0.93701 0.99125 0.99171 1.21046 0.97387 0.96513 0.97893 1.21254 0.98832 0.92833 1.00015 1.17157 0.93403 0.84957 0.97198 1.45663 1.61440 1.10692 1.13584 1.22215 1.00387 0.97808 0.81118 1.22634 1.01165 0.96478 0.96647 1.22360 1.05773 0.96939 0.94430 1.21140 0.75917 0.84600 0.87401 1.90741 1.49770 1.82740 1.16469 0.92535 0.97636 0.97516 0.91937 0.93189 0.90562 0.90453 0.86510 0.87058 0.85365 0.85473 0.85465 0.85710 0.89982 0.90776 0.89852 0.88363 0.87653 0.86940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.48 13.29 55.43 0.74 -25.75 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -14.91 9.43 -34.44 -0.32 -15.24 16 8 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 9 C 0.20 5.23 5.69 36.00 0.20 5.43 16 10 O -0.39 -9.17 10.30 -38.80 -0.40 -9.57 16 11 C 0.06 1.08 6.33 37.15 0.24 1.32 16 12 C 0.08 1.14 5.84 37.15 0.22 1.36 16 13 O -0.34 -5.47 10.19 -42.02 -0.43 -5.89 16 14 C 0.46 6.61 7.00 36.01 0.25 6.86 16 15 O -0.51 -7.81 15.36 -18.75 -0.29 -8.09 16 16 C -0.08 -0.93 5.64 -29.03 -0.16 -1.09 16 17 C -0.06 -0.78 4.39 -104.43 -0.46 -1.24 16 18 C -0.10 -0.99 9.67 -39.61 -0.38 -1.37 16 19 C -0.11 -1.00 10.04 -39.55 -0.40 -1.39 16 20 C -0.11 -0.98 10.04 -39.61 -0.40 -1.37 16 21 C -0.11 -1.17 9.97 -39.40 -0.39 -1.56 16 22 C 0.16 2.00 5.36 -83.69 -0.45 1.56 16 23 N -0.58 -6.95 2.11 -112.26 -0.24 -7.18 16 24 C 0.11 1.09 7.28 -3.12 -0.02 1.06 16 25 C -0.13 -1.05 7.18 -25.10 -0.18 -1.23 16 26 C -0.15 -1.49 6.86 -26.74 -0.18 -1.67 16 27 C 0.52 6.78 7.43 -10.86 -0.08 6.70 16 28 O -0.52 -8.72 17.71 5.56 0.10 -8.62 16 29 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 1.15 8.13 -51.93 -0.42 0.73 16 35 H 0.08 0.98 8.13 -51.93 -0.42 0.56 16 36 H 0.12 1.15 8.05 -51.93 -0.42 0.73 16 37 H 0.11 1.45 7.14 -51.93 -0.37 1.08 16 38 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.89 6.69 -51.92 -0.35 0.54 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 403.21 15.07 6.08 6.08 Total: -1.00 -35.43 403.21 -9.11 -44.54 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -7.02 Total: -1.59 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -2.62 Total: -0.36 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: 0.50 Total: -32.93 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -1.02 Total: -32.17 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.43 -9.11 -44.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884882247.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.805 kcal (2) G-P(sol) polarization free energy of solvation -35.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds