Wall clock time and date at job start Wed Apr 1 2020 04:36:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86795 * 120.00194 * 2 1
4 4 H 1.48502 * 109.47097 * 240.00175 * 3 2 1
5 5 H 1.48501 * 109.47137 * 359.97438 * 3 2 1
6 6 H 1.48496 * 109.47284 * 120.00110 * 3 2 1
7 7 C 1.37880 * 120.00026 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00376 * 179.97438 * 7 2 1
9 9 C 1.50698 * 120.00061 * 0.02562 * 7 2 1
10 10 O 1.42902 * 109.47384 * 179.97438 * 9 7 2
11 11 C 1.42900 * 114.00066 * 179.97438 * 10 9 7
12 12 C 1.52994 * 109.47130 * 179.97438 * 11 10 9
13 13 O 1.45202 * 109.47082 * 65.00268 * 12 11 10
14 14 C 1.34228 * 117.00216 * 179.97438 * 13 12 11
15 15 O 1.20826 * 119.99931 * 359.97438 * 14 13 12
16 16 C 1.50704 * 119.99916 * 179.97438 * 14 13 12
17 17 C 1.50702 * 109.46763 * 179.97438 * 16 14 13
18 18 C 1.38131 * 120.03733 * 264.99858 * 17 16 14
19 19 C 1.38264 * 120.06989 * 179.72420 * 18 17 16
20 20 C 1.38309 * 120.14065 * 0.25958 * 19 18 17
21 21 C 1.38088 * 120.06688 * 0.02562 * 20 19 18
22 22 C 1.38858 * 120.03437 * 85.26052 * 17 16 14
23 23 N 1.39929 * 120.06784 * 0.02562 * 22 17 16
24 24 C 1.46763 * 124.34731 * 270.25303 * 23 22 17
25 25 C 1.54481 * 105.47115 * 197.01762 * 24 23 22
26 26 C 1.54628 * 101.76605 * 334.58774 * 25 24 23
27 27 C 1.34415 * 124.34625 * 89.95742 * 23 22 17
28 28 O 1.21279 * 124.94499 * 359.56839 * 27 23 22
29 29 H 0.96993 * 119.99726 * 0.02562 * 1 2 3
30 30 H 1.09005 * 109.47369 * 59.99481 * 9 7 2
31 31 H 1.09005 * 109.46861 * 300.00132 * 9 7 2
32 32 H 1.09005 * 109.46787 * 59.99964 * 11 10 9
33 33 H 1.09003 * 109.47252 * 300.00344 * 11 10 9
34 34 H 1.08998 * 109.47447 * 305.00669 * 12 11 10
35 35 H 1.09000 * 109.47335 * 184.99862 * 12 11 10
36 36 H 1.09001 * 109.46710 * 60.00437 * 16 14 13
37 37 H 1.08995 * 109.47167 * 300.00012 * 16 14 13
38 38 H 1.08002 * 119.96825 * 0.02562 * 18 17 16
39 39 H 1.07994 * 119.93167 * 180.23481 * 19 18 17
40 40 H 1.07999 * 119.96267 * 179.97438 * 20 19 18
41 41 H 1.08007 * 120.02890 * 179.97438 * 21 20 19
42 42 H 1.08999 * 110.24978 * 316.02301 * 24 23 22
43 43 H 1.09007 * 110.24528 * 78.02467 * 24 23 22
44 44 H 1.09003 * 110.96706 * 92.70742 * 25 24 23
45 45 H 1.09000 * 110.96967 * 216.47024 * 25 24 23
46 46 H 1.09000 * 110.48659 * 143.47521 * 26 25 24
47 47 H 1.09006 * 110.48848 * 266.11879 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.1029 1.6963 -1.2125
5 1 1.2842 2.7464 -0.0006
6 1 3.1029 1.6963 1.2124
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0001
9 6 1.2511 -2.4992 0.0005
10 8 2.1797 -3.5854 0.0005
11 6 1.5651 -4.8755 0.0011
12 6 2.6480 -5.9562 0.0004
13 8 3.4001 -5.8885 1.2406
14 6 4.3943 -6.7763 1.3996
15 8 4.6280 -7.5835 0.5315
16 6 5.2190 -6.7661 2.6610
17 6 6.2597 -7.8537 2.5894
18 6 6.0094 -9.0885 3.1557
19 6 6.9615 -10.0886 3.0855
20 6 8.1691 -9.8548 2.4531
21 6 8.4276 -8.6206 1.8901
22 6 7.4733 -7.6139 1.9588
23 7 7.7323 -6.3622 1.3894
24 6 7.4103 -6.0001 0.0041
25 6 8.2451 -4.7354 -0.2959
26 6 8.4426 -4.1449 1.1195
27 6 8.3027 -5.3352 2.0427
28 8 8.6561 -5.3601 3.2025
29 1 -0.4849 0.8400 -0.0004
30 1 0.6246 -2.5571 -0.8897
31 1 0.6240 -2.5567 0.8903
32 1 0.9446 -4.9827 -0.8887
33 1 0.9452 -4.9822 0.8913
34 1 3.3210 -5.7957 -0.8418
35 1 2.1819 -6.9375 -0.0887
36 1 4.5709 -6.9398 3.5201
37 1 5.7103 -5.7989 2.7660
38 1 5.0672 -9.2745 3.6497
39 1 6.7620 -11.0544 3.5257
40 1 8.9109 -10.6379 2.4003
41 1 9.3710 -8.4385 1.3968
42 1 7.6922 -6.8073 -0.6721
43 1 6.3467 -5.7814 -0.0912
44 1 9.2025 -4.9976 -0.7463
45 1 7.6921 -4.0450 -0.9329
46 1 9.4336 -3.7007 1.2126
47 1 7.6706 -3.4063 1.3359
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000884882247.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:36:09
Heat of formation + Delta-G solvation = -137.342627 kcal
Electronic energy + Delta-G solvation = -30652.642646 eV
Core-core repulsion = 26379.714398 eV
Total energy + Delta-G solvation = -4272.928249 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.161 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-41.30771 -40.24512 -38.96205 -37.11345 -36.55231 -36.05734 -33.58467 -32.90841
-32.77893 -30.32653 -29.59293 -27.97510 -27.74477 -26.89477 -23.39697 -23.12355
-22.41423 -22.11149 -21.86972 -20.76451 -19.78820 -17.75543 -17.69034 -17.16342
-16.67624 -16.49602 -16.27817 -15.93015 -15.68830 -15.41330 -15.06438 -14.83146
-14.61614 -14.34611 -13.93868 -13.81856 -13.62746 -13.48890 -13.25580 -13.21513
-12.90525 -12.79309 -12.48901 -12.27438 -11.98833 -11.71241 -11.66726 -11.55023
-11.46867 -11.20667 -10.98168 -10.88169 -10.79976 -10.47805 -10.41852 -10.10629
-10.08985 -9.18406 -9.14416 -9.12258 -8.94771 -8.90861 -8.25394 -6.15182
-4.17269 0.91932 1.06212 2.20811 2.36485 2.70066 2.74542 3.29458
3.32578 3.35879 3.45996 4.20109 4.28668 4.32268 4.33326 4.52771
4.62333 4.66478 4.74443 4.79801 4.85065 4.93128 5.09803 5.16622
5.17900 5.21421 5.27080 5.30587 5.37723 5.39086 5.45127 5.53575
5.63920 5.68602 5.78668 5.81163 5.87995 6.03060 6.04229 6.17704
6.23457 6.32689 6.53061 6.71638 6.85777 7.01219 7.35738 7.73588
7.79411 7.98817 8.08622 8.47757 8.94455 9.47569 10.96330
Molecular weight = 347.16amu
Principal moments of inertia in cm(-1)
A = 0.012432 B = 0.002765 C = 0.002418
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2251.645173 B =10124.309584 C =11576.307301
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.898 5.898
2 C 0.057 3.943
3 Si 0.908 3.092
4 H -0.275 1.275
5 H -0.286 1.286
6 H -0.274 1.274
7 C -0.516 4.516
8 H 0.066 0.934
9 C 0.195 3.805
10 O -0.391 6.391
11 C 0.061 3.939
12 C 0.075 3.925
13 O -0.340 6.340
14 C 0.464 3.536
15 O -0.507 6.507
16 C -0.076 4.076
17 C -0.065 4.065
18 C -0.097 4.097
19 C -0.114 4.114
20 C -0.110 4.110
21 C -0.110 4.110
22 C 0.162 3.838
23 N -0.582 5.582
24 C 0.106 3.894
25 C -0.131 4.131
26 C -0.155 4.155
27 C 0.520 3.480
28 O -0.522 6.522
29 H 0.265 0.735
30 H 0.006 0.994
31 H 0.007 0.993
32 H 0.063 0.937
33 H 0.050 0.950
34 H 0.076 0.924
35 H 0.077 0.923
36 H 0.117 0.883
37 H 0.111 0.889
38 H 0.128 0.872
39 H 0.127 0.873
40 H 0.127 0.873
41 H 0.125 0.875
42 H 0.082 0.918
43 H 0.074 0.926
44 H 0.083 0.917
45 H 0.098 0.902
46 H 0.105 0.895
47 H 0.112 0.888
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.035 -19.078 1.979 24.371
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.537 5.537
2 C -0.144 4.144
3 Si 0.735 3.265
4 H -0.200 1.200
5 H -0.211 1.211
6 H -0.199 1.199
7 C -0.554 4.554
8 H 0.084 0.916
9 C 0.121 3.879
10 O -0.311 6.311
11 C -0.016 4.016
12 C 0.002 3.998
13 O -0.256 6.256
14 C 0.307 3.693
15 O -0.396 6.396
16 C -0.114 4.114
17 C -0.066 4.066
18 C -0.116 4.116
19 C -0.132 4.132
20 C -0.128 4.128
21 C -0.129 4.129
22 C 0.073 3.927
23 N -0.314 5.314
24 C -0.015 4.015
25 C -0.169 4.169
26 C -0.195 4.195
27 C 0.309 3.691
28 O -0.397 6.397
29 H 0.075 0.925
30 H 0.024 0.976
31 H 0.025 0.975
32 H 0.081 0.919
33 H 0.068 0.932
34 H 0.094 0.906
35 H 0.095 0.905
36 H 0.135 0.865
37 H 0.129 0.871
38 H 0.146 0.854
39 H 0.145 0.855
40 H 0.145 0.855
41 H 0.143 0.857
42 H 0.100 0.900
43 H 0.092 0.908
44 H 0.101 0.899
45 H 0.116 0.884
46 H 0.123 0.877
47 H 0.131 0.869
Dipole moment (debyes) X Y Z Total
from point charges 15.287 -19.179 2.326 24.636
hybrid contribution -0.152 0.750 -0.235 0.801
sum 15.136 -18.429 2.091 23.939
Atomic orbital electron populations
1.69946 1.06117 1.27357 1.50324 1.24947 0.94988 0.99450 0.95064
0.86390 0.79340 0.81854 0.78874 1.19996 1.21130 1.19928 1.20991
0.94020 0.89276 1.51141 0.91575 1.20231 0.88730 0.83448 0.95494
1.87904 1.35353 1.12595 1.95231 1.22322 0.93255 0.85478 1.00591
1.23216 0.93632 0.98815 0.84151 1.86615 1.43366 1.53971 1.41669
1.23379 0.79136 0.78181 0.88631 1.90655 1.67765 1.37870 1.43283
1.20222 0.95578 1.00422 0.95155 1.19511 0.93668 0.94817 0.98613
1.20939 0.99587 0.91868 0.99208 1.21166 0.93701 0.99125 0.99171
1.21046 0.97387 0.96513 0.97893 1.21254 0.98832 0.92833 1.00015
1.17157 0.93403 0.84957 0.97198 1.45663 1.61440 1.10692 1.13584
1.22215 1.00387 0.97808 0.81118 1.22634 1.01165 0.96478 0.96647
1.22360 1.05773 0.96939 0.94430 1.21140 0.75917 0.84600 0.87401
1.90741 1.49770 1.82740 1.16469 0.92535 0.97636 0.97516 0.91937
0.93189 0.90562 0.90453 0.86510 0.87058 0.85365 0.85473 0.85465
0.85710 0.89982 0.90776 0.89852 0.88363 0.87653 0.86940
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.48 13.29 55.43 0.74 -25.75 16
2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16
3 Si 0.91 21.46 29.54 -169.99 -5.02 16.44 16
4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16
5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16
6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16
7 C -0.52 -14.91 9.43 -34.44 -0.32 -15.24 16
8 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16
9 C 0.20 5.23 5.69 36.00 0.20 5.43 16
10 O -0.39 -9.17 10.30 -38.80 -0.40 -9.57 16
11 C 0.06 1.08 6.33 37.15 0.24 1.32 16
12 C 0.08 1.14 5.84 37.15 0.22 1.36 16
13 O -0.34 -5.47 10.19 -42.02 -0.43 -5.89 16
14 C 0.46 6.61 7.00 36.01 0.25 6.86 16
15 O -0.51 -7.81 15.36 -18.75 -0.29 -8.09 16
16 C -0.08 -0.93 5.64 -29.03 -0.16 -1.09 16
17 C -0.06 -0.78 4.39 -104.43 -0.46 -1.24 16
18 C -0.10 -0.99 9.67 -39.61 -0.38 -1.37 16
19 C -0.11 -1.00 10.04 -39.55 -0.40 -1.39 16
20 C -0.11 -0.98 10.04 -39.61 -0.40 -1.37 16
21 C -0.11 -1.17 9.97 -39.40 -0.39 -1.56 16
22 C 0.16 2.00 5.36 -83.69 -0.45 1.56 16
23 N -0.58 -6.95 2.11 -112.26 -0.24 -7.18 16
24 C 0.11 1.09 7.28 -3.12 -0.02 1.06 16
25 C -0.13 -1.05 7.18 -25.10 -0.18 -1.23 16
26 C -0.15 -1.49 6.86 -26.74 -0.18 -1.67 16
27 C 0.52 6.78 7.43 -10.86 -0.08 6.70 16
28 O -0.52 -8.72 17.71 5.56 0.10 -8.62 16
29 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16
30 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16
31 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16
32 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16
33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16
34 H 0.08 1.15 8.13 -51.93 -0.42 0.73 16
35 H 0.08 0.98 8.13 -51.93 -0.42 0.56 16
36 H 0.12 1.15 8.05 -51.93 -0.42 0.73 16
37 H 0.11 1.45 7.14 -51.93 -0.37 1.08 16
38 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16
39 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16
40 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16
41 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16
42 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16
43 H 0.07 0.89 6.69 -51.92 -0.35 0.54 16
44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16
45 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16
46 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16
47 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16
LS Contribution 403.21 15.07 6.08 6.08
Total: -1.00 -35.43 403.21 -9.11 -44.54
By element:
Atomic # 1 Polarization: 5.43 SS G_CDS: -7.02 Total: -1.59 kcal
Atomic # 6 Polarization: 2.26 SS G_CDS: -2.62 Total: -0.36 kcal
Atomic # 7 Polarization: -33.43 SS G_CDS: 0.50 Total: -32.93 kcal
Atomic # 8 Polarization: -31.16 SS G_CDS: -1.02 Total: -32.17 kcal
Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal
Total LS contribution 6.08 Total: 6.08 kcal
Total: -35.43 -9.11 -44.54 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000884882247.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -92.805 kcal
(2) G-P(sol) polarization free energy of solvation -35.431 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.236 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.538 kcal
(6) G-S(sol) free energy of system = (1) + (5) -137.343 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds