Wall clock time and date at job start Wed Apr 1 2020 04:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00194 * 2 1 4 4 H 1.48502 * 109.47097 * 240.00175 * 3 2 1 5 5 H 1.48501 * 109.47137 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47284 * 120.00110 * 3 2 1 7 7 C 1.37880 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00376 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00061 * 0.02562 * 7 2 1 10 10 O 1.42902 * 109.47384 * 179.97438 * 9 7 2 11 11 C 1.42900 * 114.00066 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47130 * 179.97438 * 11 10 9 13 13 O 1.45202 * 109.47082 * 65.00268 * 12 11 10 14 14 C 1.34228 * 117.00216 * 179.97438 * 13 12 11 15 15 O 1.20826 * 119.99931 * 359.97438 * 14 13 12 16 16 C 1.50704 * 119.99916 * 179.97438 * 14 13 12 17 17 C 1.50702 * 109.46763 * 179.97438 * 16 14 13 18 18 C 1.38131 * 120.03733 * 264.99858 * 17 16 14 19 19 C 1.38264 * 120.06989 * 179.72420 * 18 17 16 20 20 C 1.38309 * 120.14065 * 0.25958 * 19 18 17 21 21 C 1.38088 * 120.06688 * 0.02562 * 20 19 18 22 22 C 1.38858 * 120.03437 * 85.26052 * 17 16 14 23 23 N 1.39929 * 120.06784 * 0.02562 * 22 17 16 24 24 C 1.46763 * 124.34731 * 270.25303 * 23 22 17 25 25 C 1.54481 * 105.47115 * 197.01762 * 24 23 22 26 26 C 1.54628 * 101.76605 * 334.58774 * 25 24 23 27 27 C 1.34415 * 124.34625 * 89.95742 * 23 22 17 28 28 O 1.21279 * 124.94499 * 359.56839 * 27 23 22 29 29 H 0.96993 * 119.99726 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.47369 * 59.99481 * 9 7 2 31 31 H 1.09005 * 109.46861 * 300.00132 * 9 7 2 32 32 H 1.09005 * 109.46787 * 59.99964 * 11 10 9 33 33 H 1.09003 * 109.47252 * 300.00344 * 11 10 9 34 34 H 1.08998 * 109.47447 * 305.00669 * 12 11 10 35 35 H 1.09000 * 109.47335 * 184.99862 * 12 11 10 36 36 H 1.09001 * 109.46710 * 60.00437 * 16 14 13 37 37 H 1.08995 * 109.47167 * 300.00012 * 16 14 13 38 38 H 1.08002 * 119.96825 * 0.02562 * 18 17 16 39 39 H 1.07994 * 119.93167 * 180.23481 * 19 18 17 40 40 H 1.07999 * 119.96267 * 179.97438 * 20 19 18 41 41 H 1.08007 * 120.02890 * 179.97438 * 21 20 19 42 42 H 1.08999 * 110.24978 * 316.02301 * 24 23 22 43 43 H 1.09007 * 110.24528 * 78.02467 * 24 23 22 44 44 H 1.09003 * 110.96706 * 92.70742 * 25 24 23 45 45 H 1.09000 * 110.96967 * 216.47024 * 25 24 23 46 46 H 1.09000 * 110.48659 * 143.47521 * 26 25 24 47 47 H 1.09006 * 110.48848 * 266.11879 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5854 0.0005 11 6 1.5651 -4.8755 0.0011 12 6 2.6480 -5.9562 0.0004 13 8 3.4001 -5.8885 1.2406 14 6 4.3943 -6.7763 1.3996 15 8 4.6280 -7.5835 0.5315 16 6 5.2190 -6.7661 2.6610 17 6 6.2597 -7.8537 2.5894 18 6 6.0094 -9.0885 3.1557 19 6 6.9615 -10.0886 3.0855 20 6 8.1691 -9.8548 2.4531 21 6 8.4276 -8.6206 1.8901 22 6 7.4733 -7.6139 1.9588 23 7 7.7323 -6.3622 1.3894 24 6 7.4103 -6.0001 0.0041 25 6 8.2451 -4.7354 -0.2959 26 6 8.4426 -4.1449 1.1195 27 6 8.3027 -5.3352 2.0427 28 8 8.6561 -5.3601 3.2025 29 1 -0.4849 0.8400 -0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8903 32 1 0.9446 -4.9827 -0.8887 33 1 0.9452 -4.9822 0.8913 34 1 3.3210 -5.7957 -0.8418 35 1 2.1819 -6.9375 -0.0887 36 1 4.5709 -6.9398 3.5201 37 1 5.7103 -5.7989 2.7660 38 1 5.0672 -9.2745 3.6497 39 1 6.7620 -11.0544 3.5257 40 1 8.9109 -10.6379 2.4003 41 1 9.3710 -8.4385 1.3968 42 1 7.6922 -6.8073 -0.6721 43 1 6.3467 -5.7814 -0.0912 44 1 9.2025 -4.9976 -0.7463 45 1 7.6921 -4.0450 -0.9329 46 1 9.4336 -3.7007 1.2126 47 1 7.6706 -3.4063 1.3359 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884882247.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:08 Heat of formation + Delta-G solvation = -157.305114 kcal Electronic energy + Delta-G solvation = -30653.508285 eV Core-core repulsion = 26379.714398 eV Total energy + Delta-G solvation = -4273.793887 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.23870 -41.36715 -39.81343 -38.73359 -37.54585 -37.43239 -34.94581 -34.39355 -33.71890 -31.74839 -30.42901 -29.22409 -28.64431 -28.56846 -24.63735 -24.25775 -24.05621 -23.08977 -22.82433 -21.81594 -20.65947 -18.91486 -18.70048 -18.57899 -18.18187 -17.71274 -17.49150 -17.10901 -16.77095 -16.60844 -16.37375 -16.16968 -15.92170 -15.55695 -15.21505 -14.84942 -14.68975 -14.52746 -14.25112 -14.22663 -14.04311 -13.75637 -13.61449 -13.47130 -13.26420 -13.17534 -12.91467 -12.69505 -12.48622 -12.45548 -12.39693 -12.31477 -12.01506 -11.93455 -11.74628 -11.61492 -11.29487 -11.10743 -10.89077 -10.27757 -10.05847 -9.90024 -9.73475 -8.31978 -6.44154 0.12429 0.29568 1.07568 1.37628 1.41192 1.45531 1.53775 1.64768 1.85999 2.34602 2.67470 3.02287 3.05274 3.36604 3.44746 3.58222 3.71710 3.74151 3.90730 3.91755 4.03402 4.06941 4.09174 4.19945 4.32109 4.39015 4.40874 4.45514 4.49762 4.51772 4.59734 4.65233 4.68164 4.79437 4.85229 4.95214 4.99643 5.09133 5.17206 5.31186 5.36094 5.42710 5.46671 5.54441 5.54904 5.87869 5.95105 6.01047 6.49231 6.64586 6.79185 7.02445 7.27412 8.80028 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.012432 B = 0.002765 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.645173 B =10124.309584 C =11576.307301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.981 3.019 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.549 4.549 8 H 0.063 0.937 9 C 0.209 3.791 10 O -0.407 6.407 11 C 0.053 3.947 12 C 0.080 3.920 13 O -0.360 6.360 14 C 0.469 3.531 15 O -0.518 6.518 16 C -0.072 4.072 17 C -0.089 4.089 18 C -0.105 4.105 19 C -0.112 4.112 20 C -0.107 4.107 21 C -0.124 4.124 22 C 0.132 3.868 23 N -0.577 5.577 24 C 0.103 3.897 25 C -0.119 4.119 26 C -0.152 4.152 27 C 0.511 3.489 28 O -0.569 6.569 29 H 0.271 0.729 30 H -0.008 1.008 31 H -0.013 1.013 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.108 0.892 36 H 0.138 0.862 37 H 0.096 0.904 38 H 0.147 0.853 39 H 0.159 0.841 40 H 0.157 0.843 41 H 0.133 0.867 42 H 0.092 0.908 43 H 0.052 0.948 44 H 0.107 0.893 45 H 0.106 0.894 46 H 0.123 0.877 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.218 -19.918 1.588 25.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.191 4.191 3 Si 0.803 3.197 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.587 4.587 8 H 0.081 0.919 9 C 0.134 3.866 10 O -0.327 6.327 11 C -0.024 4.024 12 C 0.007 3.993 13 O -0.276 6.276 14 C 0.313 3.687 15 O -0.407 6.407 16 C -0.109 4.109 17 C -0.090 4.090 18 C -0.124 4.124 19 C -0.130 4.130 20 C -0.125 4.125 21 C -0.143 4.143 22 C 0.042 3.958 23 N -0.308 5.308 24 C -0.018 4.018 25 C -0.156 4.156 26 C -0.192 4.192 27 C 0.302 3.698 28 O -0.448 6.448 29 H 0.080 0.920 30 H 0.010 0.990 31 H 0.005 0.995 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.126 0.874 36 H 0.156 0.844 37 H 0.114 0.886 38 H 0.164 0.836 39 H 0.176 0.824 40 H 0.175 0.825 41 H 0.151 0.849 42 H 0.110 0.890 43 H 0.070 0.930 44 H 0.126 0.874 45 H 0.125 0.875 46 H 0.141 0.859 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 16.460 -20.057 1.904 26.016 hybrid contribution -0.561 0.841 -0.107 1.017 sum 15.899 -19.216 1.797 25.005 Atomic orbital electron populations 1.70052 1.07728 1.28734 1.50408 1.25936 0.95947 1.03320 0.93914 0.85269 0.78159 0.76790 0.79448 1.18747 1.20118 1.19120 1.21355 0.94162 0.90803 1.52370 0.91923 1.19856 0.88555 0.84418 0.93772 1.87851 1.35435 1.14105 1.95315 1.22649 0.94555 0.83449 1.01744 1.23192 0.93084 0.99073 0.83949 1.86607 1.44123 1.54860 1.42038 1.23689 0.78550 0.77447 0.89022 1.90634 1.67979 1.38325 1.43789 1.20241 0.95712 1.00083 0.94859 1.19647 0.93675 0.95632 1.00053 1.21267 1.00824 0.91419 0.98858 1.21579 0.93085 1.00005 0.98317 1.21452 0.98102 0.96423 0.96535 1.21479 0.98887 0.93314 1.00604 1.17542 0.94334 0.85536 0.98347 1.45760 1.60420 1.10601 1.13983 1.22293 0.99571 0.99301 0.80611 1.22658 1.02010 0.95207 0.95743 1.22408 1.06636 0.95566 0.94545 1.21727 0.75252 0.85654 0.87171 1.90697 1.51974 1.83663 1.18426 0.92028 0.99010 0.99537 0.89971 0.92803 0.90698 0.87425 0.84430 0.88555 0.83562 0.82350 0.82508 0.84949 0.88961 0.92954 0.87437 0.87519 0.85887 0.87357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.20 13.29 21.45 0.28 -54.92 16 2 C 0.01 0.43 5.46 84.66 0.46 0.89 16 3 Si 0.98 43.64 29.54 68.60 2.03 45.67 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.55 -32.24 9.43 25.60 0.24 -32.00 16 8 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 9 C 0.21 11.50 5.69 71.24 0.41 11.91 16 10 O -0.41 -19.45 10.30 -145.57 -1.50 -20.95 16 11 C 0.05 1.86 6.33 71.98 0.46 2.31 16 12 C 0.08 2.37 5.84 71.98 0.42 2.80 16 13 O -0.36 -11.59 10.19 -48.75 -0.50 -12.08 16 14 C 0.47 13.38 7.00 71.24 0.50 13.88 16 15 O -0.52 -15.79 15.36 21.96 0.34 -15.46 16 16 C -0.07 -1.77 5.64 29.10 0.16 -1.61 16 17 C -0.09 -2.13 4.39 -19.74 -0.09 -2.21 16 18 C -0.11 -1.98 9.67 22.25 0.22 -1.77 16 19 C -0.11 -1.69 10.04 22.29 0.22 -1.47 16 20 C -0.11 -1.67 10.04 22.25 0.22 -1.45 16 21 C -0.12 -2.53 9.97 22.39 0.22 -2.31 16 22 C 0.13 3.27 5.36 38.15 0.20 3.47 16 23 N -0.58 -14.01 2.11 -627.68 -1.32 -15.34 16 24 C 0.10 2.10 7.28 86.83 0.63 2.74 16 25 C -0.12 -1.75 7.18 31.65 0.23 -1.53 16 26 C -0.15 -2.87 6.86 30.59 0.21 -2.66 16 27 C 0.51 13.71 7.43 87.90 0.65 14.37 16 28 O -0.57 -19.82 17.71 -3.02 -0.05 -19.87 16 29 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 30 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 31 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 32 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 33 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.07 2.23 8.13 -2.39 -0.02 2.21 16 35 H 0.11 2.54 8.13 -2.39 -0.02 2.52 16 36 H 0.14 2.69 8.05 -2.39 -0.02 2.67 16 37 H 0.10 2.66 7.14 -2.39 -0.02 2.65 16 38 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 39 H 0.16 1.35 8.06 -2.91 -0.02 1.32 16 40 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 41 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 42 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.05 1.29 6.69 -2.38 -0.02 1.28 16 44 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.11 1.43 8.14 -2.39 -0.02 1.42 16 46 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.11 2.14 8.14 -2.38 -0.02 2.13 16 Total: -1.00 -78.01 403.21 5.62 -72.39 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.97 Total: 15.20 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: 5.37 Total: 5.36 kcal Atomic # 7 Polarization: -69.21 SS G_CDS: -1.04 Total: -70.25 kcal Atomic # 8 Polarization: -66.64 SS G_CDS: -1.71 Total: -68.36 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -78.01 5.62 -72.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884882247.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.915 kcal (2) G-P(sol) polarization free energy of solvation -78.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds