Wall clock time and date at job start Wed Apr 1 2020 05:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86803 * 119.99824 * 2 1 4 4 H 1.48505 * 109.47101 * 240.00146 * 3 2 1 5 5 H 1.48502 * 109.46973 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47025 * 120.00092 * 3 2 1 7 7 C 1.38653 * 120.00364 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00355 * 179.97438 * 7 2 1 9 9 O 1.34833 * 119.99644 * 0.02562 * 7 2 1 10 10 C 1.35755 * 116.99740 * 185.05410 * 9 7 2 11 11 C 1.38898 * 120.07090 * 354.46721 * 10 9 7 12 12 C 1.38072 * 119.93216 * 179.97438 * 11 10 9 13 13 C 1.38320 * 120.07143 * 359.97438 * 12 11 10 14 14 C 1.38287 * 120.13785 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.96502 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46978 * 90.00272 * 15 14 13 17 17 O 1.21278 * 119.99901 * 359.97438 * 16 15 14 18 18 N 1.34779 * 119.99770 * 179.97438 * 16 15 14 19 19 C 1.47425 * 125.64580 * 0.03498 * 18 16 15 20 20 C 1.54916 * 104.82924 * 155.83866 * 19 18 16 21 21 C 1.55157 * 101.57867 * 37.01058 * 20 19 18 22 22 C 1.47015 * 125.64536 * 179.97438 * 18 16 15 23 23 H 1.08997 * 109.88790 * 300.50712 * 22 18 16 24 24 C 1.52994 * 109.88551 * 61.67646 * 22 18 16 25 25 O 1.43755 * 109.63259 * 303.90537 * 24 22 18 26 26 C 1.44581 * 104.91846 * 215.70769 * 25 24 22 27 27 C 1.54920 * 101.63799 * 36.27024 * 26 25 24 28 28 O 1.43373 * 109.63498 * 184.68985 * 24 22 18 29 29 C 1.38123 * 120.06278 * 0.27218 * 14 13 12 30 30 H 0.97003 * 120.00077 * 0.02562 * 1 2 3 31 31 H 1.08005 * 120.03218 * 359.97438 * 11 10 9 32 32 H 1.08003 * 119.96710 * 179.97438 * 12 11 10 33 33 H 1.07996 * 119.93446 * 180.02562 * 13 12 11 34 34 H 1.08996 * 109.47238 * 329.99307 * 15 14 13 35 35 H 1.09002 * 109.46537 * 209.99902 * 15 14 13 36 36 H 1.09000 * 110.36686 * 274.67454 * 19 18 16 37 37 H 1.08996 * 110.36968 * 36.89665 * 19 18 16 38 38 H 1.08997 * 111.00638 * 155.08511 * 20 19 18 39 39 H 1.08996 * 111.00345 * 278.89859 * 20 19 18 40 40 H 1.09007 * 110.71807 * 206.13786 * 21 20 19 41 41 H 1.09001 * 110.72536 * 82.86391 * 21 20 19 42 42 H 1.09002 * 109.62949 * 64.29768 * 24 22 18 43 43 H 1.08997 * 111.09474 * 278.15626 * 26 25 24 44 44 H 1.09008 * 110.94500 * 154.31270 * 26 25 24 45 45 H 1.08996 * 110.69372 * 205.95718 * 27 26 25 46 46 H 1.09000 * 110.84313 * 82.82062 * 27 26 25 47 47 H 1.08004 * 120.03226 * 179.70747 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1032 1.6965 -1.2126 5 1 1.2844 2.7465 -0.0006 6 1 3.1032 1.6964 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0016 10 6 2.0700 -3.5046 0.1045 11 6 3.4574 -3.4395 0.0921 12 6 4.2025 -4.5968 0.2007 13 6 3.5687 -5.8203 0.3223 14 6 2.1876 -5.8885 0.3350 15 6 1.5011 -7.2236 0.4670 16 6 1.2785 -7.5318 1.9253 17 8 1.6419 -6.7451 2.7737 18 7 0.6755 -8.6818 2.2865 19 6 0.1867 -9.7224 1.3636 20 6 0.1734 -11.0235 2.2043 21 6 -0.2759 -10.4934 3.5915 22 6 0.3974 -9.1068 3.6661 23 1 1.3290 -9.1766 4.2275 24 6 -0.5450 -8.1067 4.3388 25 8 0.0261 -6.7888 4.2780 26 6 -0.3559 -6.1599 5.5226 27 6 -0.2773 -7.3501 6.5112 28 8 -0.7257 -8.4655 5.7151 29 6 1.4367 -4.7349 0.2205 30 1 -0.4850 0.8401 -0.0004 31 1 3.9529 -2.4844 -0.0024 32 1 5.2813 -4.5469 0.1908 33 1 4.1536 -6.7241 0.4075 34 1 2.1256 -7.9987 0.0229 35 1 0.5411 -7.1909 -0.0481 36 1 -0.8195 -9.4824 1.0200 37 1 0.8625 -9.8243 0.5146 38 1 -0.5473 -11.7381 1.8069 39 1 1.1688 -11.4644 2.2575 40 1 0.0880 -11.1419 4.3885 41 1 -1.3609 -10.3986 3.6353 42 1 -1.5087 -8.1120 3.8294 43 1 -1.3702 -5.7648 5.4674 44 1 0.3517 -5.3774 5.7970 45 1 -0.9424 -7.1905 7.3598 46 1 0.7469 -7.5057 6.8502 47 1 0.3580 -4.7893 0.2257 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888437803.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:55 Heat of formation + Delta-G solvation = -110.278461 kcal Electronic energy + Delta-G solvation = -31111.942458 eV Core-core repulsion = 26840.187800 eV Total energy + Delta-G solvation = -4271.754659 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.78435 -39.58271 -38.80651 -37.38251 -36.22742 -34.94332 -32.47972 -32.13837 -31.35516 -31.11650 -29.10052 -28.65016 -26.94081 -25.18843 -24.64799 -23.30959 -22.72030 -21.63151 -21.35544 -20.57198 -19.11483 -17.57221 -17.50875 -17.15810 -16.82781 -16.67442 -16.16964 -15.45794 -15.13108 -14.91061 -14.77721 -14.42706 -14.30602 -14.05049 -13.73548 -13.65752 -13.42759 -13.37250 -13.22094 -12.80653 -12.65111 -12.50204 -12.29242 -12.20968 -11.93688 -11.69465 -11.52958 -11.40508 -11.27851 -11.17759 -11.12687 -10.74866 -10.68300 -10.52645 -10.39161 -10.23434 -9.86161 -9.39964 -9.24629 -8.75451 -8.53059 -7.95321 -7.11623 -6.36244 -3.95103 2.18710 2.49433 2.85912 3.02662 3.17753 3.19633 3.21748 3.52115 3.90789 4.03499 4.22599 4.36254 4.56126 4.60408 4.65066 4.79980 4.90962 4.96400 5.04549 5.08274 5.12529 5.16726 5.25050 5.30082 5.36658 5.40471 5.44915 5.52043 5.55475 5.60033 5.61977 5.73299 5.79396 5.85336 5.86017 5.99336 6.03324 6.25798 6.30774 6.44572 6.76345 7.02315 7.04008 7.16173 7.38058 7.46505 7.53391 7.61242 7.93458 8.09023 8.53052 9.09549 9.81596 10.82171 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013261 B = 0.002850 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.969335 B = 9821.316098 C =11103.058740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.038 3.962 3 Si 0.939 3.061 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.390 4.390 8 H 0.090 0.910 9 O -0.181 6.181 10 C 0.155 3.845 11 C -0.231 4.231 12 C -0.075 4.075 13 C -0.196 4.196 14 C -0.030 4.030 15 C -0.087 4.087 16 C 0.523 3.477 17 O -0.476 6.476 18 N -0.622 5.622 19 C 0.098 3.902 20 C -0.133 4.133 21 C -0.119 4.119 22 C 0.130 3.870 23 H 0.080 0.920 24 C 0.219 3.781 25 O -0.327 6.327 26 C 0.011 3.989 27 C 0.023 3.977 28 O -0.387 6.387 29 C -0.172 4.172 30 H 0.269 0.731 31 H 0.125 0.875 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.109 0.891 45 H 0.097 0.903 46 H 0.074 0.926 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.067 -21.984 7.089 23.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.165 4.165 3 Si 0.764 3.236 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.466 4.466 8 H 0.108 0.892 9 O -0.085 6.085 10 C 0.102 3.898 11 C -0.251 4.251 12 C -0.094 4.094 13 C -0.215 4.215 14 C -0.031 4.031 15 C -0.127 4.127 16 C 0.311 3.689 17 O -0.346 6.346 18 N -0.362 5.362 19 C -0.025 4.025 20 C -0.171 4.171 21 C -0.157 4.157 22 C 0.025 3.975 23 H 0.098 0.902 24 C 0.122 3.878 25 O -0.246 6.246 26 C -0.065 4.065 27 C -0.053 4.053 28 O -0.308 6.308 29 C -0.191 4.191 30 H 0.079 0.921 31 H 0.143 0.857 32 H 0.124 0.876 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.127 0.873 45 H 0.115 0.885 46 H 0.093 0.907 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.199 -21.301 7.411 22.585 hybrid contribution 0.391 0.930 0.144 1.019 sum -0.808 -20.371 7.554 21.741 Atomic orbital electron populations 1.70033 1.05913 1.27556 1.46616 1.25255 0.95815 0.98712 0.96741 0.85810 0.78689 0.79945 0.79132 1.19563 1.20345 1.19558 1.21259 0.91724 0.80920 1.52728 0.89240 1.83978 1.34205 1.11338 1.78957 1.19264 0.90228 0.87932 0.92376 1.21156 0.93840 0.98883 1.11175 1.20660 0.98295 0.92322 0.98092 1.20335 0.93306 0.96934 1.10894 1.18670 0.93175 0.92002 0.99253 1.20558 1.02221 0.96810 0.93101 1.20423 0.77546 0.79471 0.91495 1.90816 1.46626 1.45088 1.52089 1.48573 1.61395 1.20361 1.05899 1.22331 0.99853 0.87030 0.93291 1.22801 1.02554 0.96715 0.95021 1.22561 1.01059 0.94060 0.97983 1.21821 0.98327 0.92964 0.84374 0.90158 1.24545 0.95720 0.84176 0.83367 1.89757 1.74383 1.23957 1.36467 1.24343 1.01873 0.96826 0.83499 1.24195 1.00951 0.85082 0.95077 1.88804 1.85369 1.40096 1.16493 1.19925 0.99015 0.89921 1.10236 0.92126 0.85709 0.87574 0.88053 0.88801 0.88674 0.91368 0.90236 0.89660 0.90449 0.89676 0.90267 0.90467 0.91133 0.87331 0.88509 0.90745 0.86950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.15 13.67 55.48 0.76 -25.39 16 2 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 21.19 29.55 -169.99 -5.02 16.17 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.39 -11.35 9.49 30.89 0.29 -11.05 16 8 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16 9 O -0.18 -5.41 9.76 0.02 0.00 -5.41 16 10 C 0.16 4.00 6.65 -39.11 -0.26 3.74 16 11 C -0.23 -5.38 9.17 -39.40 -0.36 -5.74 16 12 C -0.08 -1.50 10.04 -39.61 -0.40 -1.90 16 13 C -0.20 -3.70 9.70 -39.53 -0.38 -4.08 16 14 C -0.03 -0.58 4.37 -104.65 -0.46 -1.04 16 15 C -0.09 -1.27 4.83 -29.04 -0.14 -1.41 16 16 C 0.52 8.40 7.43 -10.98 -0.08 8.32 16 17 O -0.48 -9.79 13.12 -19.14 -0.25 -10.04 16 18 N -0.62 -7.67 3.06 -163.02 -0.50 -8.17 16 19 C 0.10 0.79 6.69 -2.53 -0.02 0.77 16 20 C -0.13 -0.82 7.09 -24.58 -0.17 -0.99 16 21 C -0.12 -0.92 6.32 -24.89 -0.16 -1.08 16 22 C 0.13 1.52 3.07 -66.96 -0.21 1.31 16 23 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 24 C 0.22 2.88 3.58 37.15 0.13 3.01 16 25 O -0.33 -5.42 7.45 -67.81 -0.51 -5.92 16 26 C 0.01 0.15 7.95 38.17 0.30 0.45 16 27 C 0.02 0.24 8.07 38.17 0.31 0.55 16 28 O -0.39 -4.70 11.05 -59.05 -0.65 -5.35 16 29 C -0.17 -3.92 9.64 -39.39 -0.38 -4.30 16 30 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.13 2.88 5.64 -52.48 -0.30 2.58 16 32 H 0.11 1.78 8.06 -52.48 -0.42 1.36 16 33 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 34 H 0.09 1.08 7.79 -51.93 -0.40 0.68 16 35 H 0.09 1.23 8.08 -51.93 -0.42 0.81 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.54 7.47 -51.93 -0.39 0.15 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 41 H 0.08 0.59 7.78 -51.93 -0.40 0.18 16 42 H 0.08 0.98 8.04 -51.93 -0.42 0.57 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.11 1.35 8.14 -51.92 -0.42 0.93 16 45 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.11 2.52 8.06 -52.48 -0.42 2.10 16 LS Contribution 384.35 15.07 5.79 5.79 Total: -1.00 -36.51 384.35 -9.27 -45.77 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -6.81 Total: 5.01 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -2.07 Total: -12.45 kcal Atomic # 7 Polarization: -33.82 SS G_CDS: 0.26 Total: -33.56 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -1.41 Total: -26.73 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.51 -9.27 -45.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888437803.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.507 kcal (2) G-P(sol) polarization free energy of solvation -36.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds