Wall clock time and date at job start Wed Apr 1 2020 05:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86803 * 119.99824 * 2 1 4 4 H 1.48505 * 109.47101 * 240.00146 * 3 2 1 5 5 H 1.48502 * 109.46973 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47025 * 120.00092 * 3 2 1 7 7 C 1.38653 * 120.00364 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00355 * 179.97438 * 7 2 1 9 9 O 1.34833 * 119.99644 * 0.02562 * 7 2 1 10 10 C 1.35755 * 116.99740 * 185.05410 * 9 7 2 11 11 C 1.38898 * 120.07090 * 354.46721 * 10 9 7 12 12 C 1.38072 * 119.93216 * 179.97438 * 11 10 9 13 13 C 1.38320 * 120.07143 * 359.97438 * 12 11 10 14 14 C 1.38287 * 120.13785 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.96502 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46978 * 90.00272 * 15 14 13 17 17 O 1.21278 * 119.99901 * 359.97438 * 16 15 14 18 18 N 1.34779 * 119.99770 * 179.97438 * 16 15 14 19 19 C 1.47425 * 125.64580 * 0.03498 * 18 16 15 20 20 C 1.54916 * 104.82924 * 155.83866 * 19 18 16 21 21 C 1.55157 * 101.57867 * 37.01058 * 20 19 18 22 22 C 1.47015 * 125.64536 * 179.97438 * 18 16 15 23 23 H 1.08997 * 109.88790 * 300.50712 * 22 18 16 24 24 C 1.52994 * 109.88551 * 61.67646 * 22 18 16 25 25 O 1.43755 * 109.63259 * 303.90537 * 24 22 18 26 26 C 1.44581 * 104.91846 * 215.70769 * 25 24 22 27 27 C 1.54920 * 101.63799 * 36.27024 * 26 25 24 28 28 O 1.43373 * 109.63498 * 184.68985 * 24 22 18 29 29 C 1.38123 * 120.06278 * 0.27218 * 14 13 12 30 30 H 0.97003 * 120.00077 * 0.02562 * 1 2 3 31 31 H 1.08005 * 120.03218 * 359.97438 * 11 10 9 32 32 H 1.08003 * 119.96710 * 179.97438 * 12 11 10 33 33 H 1.07996 * 119.93446 * 180.02562 * 13 12 11 34 34 H 1.08996 * 109.47238 * 329.99307 * 15 14 13 35 35 H 1.09002 * 109.46537 * 209.99902 * 15 14 13 36 36 H 1.09000 * 110.36686 * 274.67454 * 19 18 16 37 37 H 1.08996 * 110.36968 * 36.89665 * 19 18 16 38 38 H 1.08997 * 111.00638 * 155.08511 * 20 19 18 39 39 H 1.08996 * 111.00345 * 278.89859 * 20 19 18 40 40 H 1.09007 * 110.71807 * 206.13786 * 21 20 19 41 41 H 1.09001 * 110.72536 * 82.86391 * 21 20 19 42 42 H 1.09002 * 109.62949 * 64.29768 * 24 22 18 43 43 H 1.08997 * 111.09474 * 278.15626 * 26 25 24 44 44 H 1.09008 * 110.94500 * 154.31270 * 26 25 24 45 45 H 1.08996 * 110.69372 * 205.95718 * 27 26 25 46 46 H 1.09000 * 110.84313 * 82.82062 * 27 26 25 47 47 H 1.08004 * 120.03226 * 179.70747 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1032 1.6965 -1.2126 5 1 1.2844 2.7465 -0.0006 6 1 3.1032 1.6964 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0016 10 6 2.0700 -3.5046 0.1045 11 6 3.4574 -3.4395 0.0921 12 6 4.2025 -4.5968 0.2007 13 6 3.5687 -5.8203 0.3223 14 6 2.1876 -5.8885 0.3350 15 6 1.5011 -7.2236 0.4670 16 6 1.2785 -7.5318 1.9253 17 8 1.6419 -6.7451 2.7737 18 7 0.6755 -8.6818 2.2865 19 6 0.1867 -9.7224 1.3636 20 6 0.1734 -11.0235 2.2043 21 6 -0.2759 -10.4934 3.5915 22 6 0.3974 -9.1068 3.6661 23 1 1.3290 -9.1766 4.2275 24 6 -0.5450 -8.1067 4.3388 25 8 0.0261 -6.7888 4.2780 26 6 -0.3559 -6.1599 5.5226 27 6 -0.2773 -7.3501 6.5112 28 8 -0.7257 -8.4655 5.7151 29 6 1.4367 -4.7349 0.2205 30 1 -0.4850 0.8401 -0.0004 31 1 3.9529 -2.4844 -0.0024 32 1 5.2813 -4.5469 0.1908 33 1 4.1536 -6.7241 0.4075 34 1 2.1256 -7.9987 0.0229 35 1 0.5411 -7.1909 -0.0481 36 1 -0.8195 -9.4824 1.0200 37 1 0.8625 -9.8243 0.5146 38 1 -0.5473 -11.7381 1.8069 39 1 1.1688 -11.4644 2.2575 40 1 0.0880 -11.1419 4.3885 41 1 -1.3609 -10.3986 3.6353 42 1 -1.5087 -8.1120 3.8294 43 1 -1.3702 -5.7648 5.4674 44 1 0.3517 -5.3774 5.7970 45 1 -0.9424 -7.1905 7.3598 46 1 0.7469 -7.5057 6.8502 47 1 0.3580 -4.7893 0.2257 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888437803.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:54 Heat of formation + Delta-G solvation = -134.273339 kcal Electronic energy + Delta-G solvation = -31112.982954 eV Core-core repulsion = 26840.187800 eV Total energy + Delta-G solvation = -4272.795155 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.77715 -40.93833 -40.32392 -38.63722 -37.83666 -35.99124 -34.34988 -33.67086 -32.43577 -32.01585 -30.85665 -29.55259 -28.37034 -27.24034 -25.55410 -24.28514 -23.77911 -23.22554 -22.57580 -21.78133 -20.23896 -19.39751 -18.71253 -18.57084 -18.17630 -17.64893 -17.06526 -16.79532 -16.49225 -16.40838 -16.17176 -15.97665 -15.58534 -15.48931 -15.13080 -14.91659 -14.64971 -14.39779 -14.26887 -14.15828 -13.92840 -13.74408 -13.59418 -13.58508 -13.16959 -12.94142 -12.74851 -12.64778 -12.47353 -12.38581 -12.21948 -12.14878 -12.13902 -12.03270 -11.68932 -11.22610 -11.20337 -10.85452 -10.81122 -10.64533 -9.62875 -9.52763 -8.97496 -8.47166 -6.15935 0.52281 0.76094 1.32619 1.44342 1.49564 1.76553 1.95163 2.17415 2.55130 2.84372 2.98094 3.16058 3.45138 3.52061 3.62621 3.71616 3.79716 3.84563 3.96503 4.05248 4.09903 4.12516 4.22435 4.26749 4.31413 4.42592 4.45153 4.53818 4.56896 4.59836 4.62179 4.68332 4.73253 4.84071 4.91931 4.98399 5.03511 5.06522 5.12367 5.14865 5.30202 5.34398 5.43055 5.65218 5.72784 5.76031 6.02466 6.05454 6.23424 6.60624 6.97059 7.38140 7.79075 8.76359 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.013261 B = 0.002850 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.969335 B = 9821.316098 C =11103.058740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.024 4.024 3 Si 1.020 2.980 4 H -0.255 1.255 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.415 4.415 8 H 0.100 0.900 9 O -0.235 6.235 10 C 0.114 3.886 11 C -0.246 4.246 12 C -0.073 4.073 13 C -0.180 4.180 14 C -0.022 4.022 15 C -0.083 4.083 16 C 0.518 3.482 17 O -0.535 6.535 18 N -0.618 5.618 19 C 0.086 3.914 20 C -0.120 4.120 21 C -0.112 4.112 22 C 0.126 3.874 23 H 0.061 0.939 24 C 0.215 3.785 25 O -0.366 6.366 26 C 0.000 4.000 27 C 0.030 3.970 28 O -0.390 6.390 29 C -0.191 4.191 30 H 0.272 0.728 31 H 0.118 0.882 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.138 0.862 35 H 0.112 0.888 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.102 0.898 45 H 0.128 0.872 46 H 0.077 0.923 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.483 -25.313 6.924 26.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.179 1.179 5 H -0.194 1.194 6 H -0.184 1.184 7 C -0.491 4.491 8 H 0.117 0.883 9 O -0.142 6.142 10 C 0.064 3.936 11 C -0.266 4.266 12 C -0.091 4.091 13 C -0.198 4.198 14 C -0.023 4.023 15 C -0.123 4.123 16 C 0.307 3.693 17 O -0.409 6.409 18 N -0.356 5.356 19 C -0.035 4.035 20 C -0.158 4.158 21 C -0.149 4.149 22 C 0.021 3.979 23 H 0.079 0.921 24 C 0.119 3.881 25 O -0.286 6.286 26 C -0.076 4.076 27 C -0.046 4.046 28 O -0.310 6.310 29 C -0.210 4.210 30 H 0.081 0.919 31 H 0.136 0.864 32 H 0.164 0.836 33 H 0.163 0.837 34 H 0.156 0.844 35 H 0.130 0.870 36 H 0.096 0.904 37 H 0.119 0.881 38 H 0.131 0.869 39 H 0.102 0.898 40 H 0.114 0.886 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.120 0.880 45 H 0.146 0.854 46 H 0.095 0.905 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.354 -24.736 7.233 25.774 hybrid contribution -0.048 1.629 0.252 1.649 sum 0.306 -23.107 7.485 24.291 Atomic orbital electron populations 1.70189 1.08051 1.28804 1.49053 1.26618 0.96891 1.02746 0.95853 0.84648 0.77409 0.74177 0.79941 1.17876 1.19398 1.18396 1.21792 0.92494 0.81531 1.53330 0.88283 1.83937 1.35935 1.12555 1.81792 1.19839 0.91674 0.87812 0.94311 1.21282 0.93053 1.00193 1.12023 1.21119 1.00202 0.91411 0.96329 1.20936 0.93393 0.98153 1.07340 1.19164 0.93761 0.92928 0.96426 1.20638 1.03589 0.95106 0.92920 1.20600 0.77374 0.79927 0.91427 1.90804 1.49483 1.47185 1.53466 1.48574 1.59789 1.19993 1.07218 1.22722 1.00757 0.86543 0.93462 1.22814 1.03752 0.96075 0.93154 1.22580 1.01045 0.91616 0.99702 1.21958 0.97526 0.94632 0.83762 0.92127 1.24670 0.95970 0.83487 0.84019 1.89737 1.75099 1.25710 1.38061 1.24504 1.01924 0.97722 0.83444 1.24285 1.02011 0.83366 0.94958 1.88774 1.85537 1.40528 1.16206 1.20153 0.98982 0.90559 1.11299 0.91862 0.86387 0.83646 0.83701 0.84379 0.87002 0.90401 0.88133 0.86852 0.89791 0.88590 0.89707 0.90533 0.90569 0.88009 0.85435 0.90487 0.88139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.98 13.67 21.61 0.30 -58.68 16 2 C -0.02 -1.43 5.49 84.83 0.47 -0.97 16 3 Si 1.02 44.75 29.55 68.60 2.03 46.78 16 4 H -0.25 -10.40 7.11 99.48 0.71 -9.69 16 5 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 6 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 7 C -0.42 -25.62 9.49 67.92 0.64 -24.98 16 8 H 0.10 5.63 5.20 -2.91 -0.02 5.61 16 9 O -0.24 -15.16 9.76 -22.83 -0.22 -15.39 16 10 C 0.11 6.19 6.65 22.58 0.15 6.34 16 11 C -0.25 -11.73 9.17 22.39 0.21 -11.53 16 12 C -0.07 -2.76 10.04 22.25 0.22 -2.54 16 13 C -0.18 -6.25 9.70 22.30 0.22 -6.03 16 14 C -0.02 -0.83 4.37 -19.88 -0.09 -0.92 16 15 C -0.08 -2.21 4.83 29.10 0.14 -2.07 16 16 C 0.52 16.02 7.43 87.66 0.65 16.68 16 17 O -0.53 -22.31 13.12 20.60 0.27 -22.04 16 18 N -0.62 -14.05 3.06 -788.07 -2.42 -16.47 16 19 C 0.09 1.07 6.69 86.86 0.58 1.65 16 20 C -0.12 -0.97 7.09 31.99 0.23 -0.74 16 21 C -0.11 -1.42 6.32 31.78 0.20 -1.22 16 22 C 0.13 2.80 3.07 45.34 0.14 2.94 16 23 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 24 C 0.22 5.66 3.58 71.98 0.26 5.92 16 25 O -0.37 -12.68 7.45 -117.83 -0.88 -13.56 16 26 C 0.00 0.01 7.95 72.64 0.58 0.59 16 27 C 0.03 0.61 8.07 72.64 0.59 1.20 16 28 O -0.39 -9.21 11.05 -126.21 -1.39 -10.61 16 29 C -0.19 -9.07 9.64 22.39 0.22 -8.86 16 30 H 0.27 15.92 8.31 -92.71 -0.77 15.14 16 31 H 0.12 5.65 5.64 -2.91 -0.02 5.63 16 32 H 0.15 4.34 8.06 -2.91 -0.02 4.32 16 33 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 34 H 0.14 2.45 7.79 -2.39 -0.02 2.43 16 35 H 0.11 2.62 8.08 -2.39 -0.02 2.60 16 36 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.10 0.85 7.47 -2.39 -0.02 0.84 16 38 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.08 1.01 7.78 -2.39 -0.02 1.00 16 42 H 0.08 1.96 8.04 -2.39 -0.02 1.94 16 43 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.10 2.75 8.14 -2.38 -0.02 2.73 16 45 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.10 4.86 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -88.48 384.35 4.06 -84.42 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: 0.98 Total: 30.08 kcal Atomic # 6 Polarization: -29.93 SS G_CDS: 5.40 Total: -24.53 kcal Atomic # 7 Polarization: -73.03 SS G_CDS: -2.12 Total: -75.15 kcal Atomic # 8 Polarization: -59.37 SS G_CDS: -2.22 Total: -61.59 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -88.48 4.06 -84.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888437803.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.857 kcal (2) G-P(sol) polarization free energy of solvation -88.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds