Wall clock time and date at job start Wed Apr 1 2020 04:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00083 * 2 1 4 4 H 1.48500 * 109.47272 * 239.99881 * 3 2 1 5 5 H 1.48496 * 109.47322 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46928 * 119.99848 * 3 2 1 7 7 C 1.37883 * 119.99612 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99284 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00309 * 0.02562 * 7 2 1 10 10 C 1.50697 * 109.47079 * 180.02562 * 9 7 2 11 11 C 1.38282 * 119.93243 * 89.99919 * 10 9 7 12 12 C 1.38115 * 120.06867 * 180.02562 * 11 10 9 13 13 C 1.38870 * 119.93064 * 359.97246 * 12 11 10 14 14 N 1.39921 * 120.07270 * 180.02562 * 13 12 11 15 15 C 1.34780 * 120.00411 * 211.45523 * 14 13 12 16 16 O 1.21290 * 119.99747 * 6.51779 * 15 14 13 17 17 C 1.50698 * 120.00180 * 186.24633 * 15 14 13 18 18 C 1.53000 * 109.54279 * 66.82507 * 17 15 14 19 19 C 1.50699 * 109.47235 * 54.62498 * 18 17 15 20 20 O 1.20830 * 119.99834 * 355.26580 * 19 18 17 21 21 O 1.34228 * 120.00295 * 175.26946 * 19 18 17 22 22 C 1.53173 * 109.54412 * 306.65017 * 17 15 14 23 23 C 1.53287 * 109.06355 * 297.02661 * 22 17 15 24 24 O 1.42901 * 109.46106 * 302.44697 * 23 22 17 25 25 C 1.42899 * 114.09599 * 61.15565 * 24 23 22 26 26 C 1.53094 * 109.41848 * 298.84116 * 25 24 23 27 27 C 1.38876 * 119.86170 * 0.28237 * 13 12 11 28 28 C 1.38116 * 119.92234 * 359.46455 * 27 13 12 29 29 H 0.96999 * 120.00083 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47444 * 59.99431 * 9 7 2 31 31 H 1.09004 * 109.46656 * 299.99720 * 9 7 2 32 32 H 1.07997 * 119.96585 * 359.96921 * 11 10 9 33 33 H 1.08002 * 120.03300 * 179.97438 * 12 11 10 34 34 H 0.97001 * 120.00165 * 31.44896 * 14 13 12 35 35 H 1.09002 * 109.47663 * 174.62309 * 18 17 15 36 36 H 1.09001 * 109.47426 * 294.62420 * 18 17 15 37 37 H 0.96702 * 116.99956 * 180.02562 * 21 19 18 38 38 H 1.09000 * 109.52793 * 57.01853 * 22 17 15 39 39 H 1.09002 * 109.52353 * 177.20486 * 22 17 15 40 40 H 1.08998 * 109.45417 * 182.44859 * 23 22 17 41 41 H 1.08996 * 109.46405 * 62.45010 * 23 22 17 42 42 H 1.09002 * 109.48227 * 178.85953 * 25 24 23 43 43 H 1.09004 * 109.49193 * 58.83388 * 25 24 23 44 44 H 1.09003 * 109.51970 * 297.70746 * 26 25 24 45 45 H 1.08998 * 109.57485 * 177.54996 * 26 25 24 46 46 H 1.07998 * 120.03860 * 179.70421 * 27 13 12 47 47 H 1.08000 * 119.96329 * 180.25715 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 6 2.2303 -3.6446 -0.0015 11 6 2.6777 -4.1696 1.1970 12 6 3.5756 -5.2191 1.2005 13 6 4.0286 -5.7474 -0.0012 14 7 4.9379 -6.8109 -0.0011 15 6 5.8395 -6.9269 -0.9962 16 8 5.9424 -6.0489 -1.8266 17 6 6.7239 -8.1446 -1.0736 18 6 5.8718 -9.3772 -1.3829 19 6 5.0672 -9.1308 -2.6331 20 8 5.0996 -8.0482 -3.1688 21 8 4.3146 -10.1139 -3.1515 22 6 7.4429 -8.3415 0.2645 23 6 8.3534 -7.1363 0.5257 24 8 9.2781 -6.9952 -0.5546 25 6 8.6624 -6.7627 -1.8230 26 6 7.7661 -7.9516 -2.1793 27 6 3.5814 -5.2145 -1.2031 28 6 2.6795 -4.1685 -1.1998 29 1 -0.4850 0.8400 0.0004 30 1 0.6246 -2.5564 -0.8919 31 1 0.6240 -2.5575 0.8881 32 1 2.3254 -3.7580 2.1313 33 1 3.9250 -5.6284 2.1369 34 1 4.9194 -7.4647 0.7152 35 1 6.5213 -10.2396 -1.5330 36 1 5.1972 -9.5712 -0.5490 37 1 3.8165 -9.9085 -3.9545 38 1 6.7074 -8.4252 1.0645 39 1 8.0441 -9.2499 0.2248 40 1 8.9012 -7.2899 1.4554 41 1 7.7474 -6.2339 0.6057 42 1 9.4329 -6.6470 -2.5854 43 1 8.0604 -5.8553 -1.7741 44 1 8.3738 -8.8521 -2.2683 45 1 7.2615 -7.7577 -3.1258 46 1 3.9355 -5.6200 -2.1393 47 1 2.3281 -3.7563 -2.1342 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902839180.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:15 Heat of formation + Delta-G solvation = -152.695245 kcal Electronic energy + Delta-G solvation = -31433.740119 eV Core-core repulsion = 27160.146131 eV Total energy + Delta-G solvation = -4273.593988 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.75997 -40.08922 -39.11126 -37.77956 -36.47417 -35.18479 -34.85754 -32.97581 -31.41250 -30.38054 -30.25793 -29.87181 -26.83054 -25.07245 -24.01579 -23.51612 -22.40982 -22.10014 -21.66156 -20.26055 -19.33669 -18.36356 -17.63218 -17.20395 -16.52846 -16.40572 -16.26961 -16.16529 -16.01165 -15.24766 -15.00704 -14.78050 -14.69857 -14.23330 -14.02361 -13.89821 -13.26789 -13.11739 -12.95648 -12.84925 -12.76946 -12.57617 -12.50236 -12.33803 -11.96793 -11.86536 -11.56578 -11.43776 -11.23264 -11.18068 -10.77707 -10.73710 -10.65459 -10.57013 -10.30727 -10.06234 -9.85569 -9.56133 -9.37541 -9.20209 -8.39092 -8.26910 -7.34321 -6.00979 -4.04775 1.86951 1.88712 2.08009 2.57473 2.73816 3.03429 3.35229 3.38571 3.42987 3.64531 3.99732 4.02387 4.24877 4.40687 4.50510 4.57887 4.62458 4.77091 4.86441 4.91754 4.98175 5.16125 5.23402 5.29387 5.32956 5.40238 5.43617 5.53722 5.60848 5.64801 5.80482 5.85247 5.99987 6.08003 6.15283 6.22034 6.23014 6.67781 6.79097 6.94757 6.96606 7.18383 7.23835 7.51354 7.53421 7.56609 7.73636 7.88716 7.94923 8.23223 8.35773 9.00454 9.58935 11.08557 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.014217 B = 0.002767 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.979382 B =10115.663693 C =10912.719682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.511 4.511 8 H 0.057 0.943 9 C 0.049 3.951 10 C -0.043 4.043 11 C -0.108 4.108 12 C -0.146 4.146 13 C 0.107 3.893 14 N -0.673 5.673 15 C 0.520 3.480 16 O -0.487 6.487 17 C -0.068 4.068 18 C -0.103 4.103 19 C 0.464 3.536 20 O -0.481 6.481 21 O -0.520 6.520 22 C -0.145 4.145 23 C 0.058 3.942 24 O -0.382 6.382 25 C 0.052 3.948 26 C -0.136 4.136 27 C -0.118 4.118 28 C -0.108 4.108 29 H 0.262 0.738 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.121 0.879 33 H 0.113 0.887 34 H 0.400 0.600 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.413 0.587 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.053 0.947 42 H 0.095 0.905 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.096 0.904 46 H 0.129 0.871 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.119 -25.381 -0.202 29.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.549 4.549 8 H 0.075 0.925 9 C 0.012 3.988 10 C -0.044 4.044 11 C -0.127 4.127 12 C -0.166 4.166 13 C 0.015 3.985 14 N -0.319 5.319 15 C 0.305 3.695 16 O -0.358 6.358 17 C -0.071 4.071 18 C -0.141 4.141 19 C 0.304 3.696 20 O -0.367 6.367 21 O -0.333 6.333 22 C -0.183 4.183 23 C -0.019 4.019 24 O -0.301 6.301 25 C -0.024 4.024 26 C -0.174 4.174 27 C -0.138 4.138 28 C -0.127 4.127 29 H 0.072 0.928 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.139 0.861 33 H 0.131 0.869 34 H 0.234 0.766 35 H 0.136 0.864 36 H 0.130 0.870 37 H 0.272 0.728 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.118 0.882 41 H 0.072 0.928 42 H 0.113 0.887 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.115 0.885 46 H 0.146 0.854 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 14.503 -24.440 -0.627 28.427 hybrid contribution -0.292 0.656 -0.168 0.738 sum 14.211 -23.784 -0.795 27.718 Atomic orbital electron populations 1.69948 1.06020 1.26888 1.50592 1.25006 0.94881 0.99229 0.95195 0.86599 0.79537 0.82794 0.78789 1.20130 1.21242 1.20173 1.21046 0.93060 0.89910 1.50924 0.92520 1.18336 0.92540 0.89624 0.98295 1.20710 0.96541 0.95277 0.91859 1.20865 0.97693 0.95646 0.98497 1.20707 1.01600 0.98927 0.95411 1.17501 0.94433 0.92231 0.94379 1.43419 1.33707 1.27920 1.26839 1.20131 0.80246 0.87817 0.81280 1.90710 1.66724 1.40128 1.38280 1.20795 0.95248 0.92601 0.98487 1.21423 0.98566 0.99694 0.94401 1.23346 0.77977 0.82043 0.86187 1.90907 1.60988 1.24714 1.60086 1.84480 1.58322 1.44366 1.46096 1.22357 0.99752 1.01358 0.94864 1.22602 0.92229 0.96309 0.90797 1.87914 1.33045 1.92819 1.16313 1.22776 0.96888 0.97730 0.85023 1.22186 0.96226 1.00070 0.98871 1.21089 0.97476 0.98221 0.97010 1.21009 0.97276 0.95914 0.98470 0.92824 0.95371 0.95364 0.86072 0.86931 0.76563 0.86373 0.87007 0.72790 0.90113 0.89215 0.88207 0.92845 0.88727 0.90788 0.90634 0.88522 0.85351 0.86230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.81 13.29 55.43 0.74 -26.08 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.51 -14.68 9.09 -34.44 -0.31 -14.99 16 8 H 0.06 1.63 7.74 -52.48 -0.41 1.23 16 9 C 0.05 1.28 5.10 -29.04 -0.15 1.13 16 10 C -0.04 -0.97 5.07 -104.59 -0.53 -1.50 16 11 C -0.11 -2.11 9.69 -39.61 -0.38 -2.49 16 12 C -0.15 -2.38 9.96 -39.39 -0.39 -2.77 16 13 C 0.11 1.76 6.31 -83.70 -0.53 1.23 16 14 N -0.67 -8.22 5.23 -9.86 -0.05 -8.27 16 15 C 0.52 6.69 3.11 -10.99 -0.03 6.65 16 16 O -0.49 -8.44 10.50 -15.53 -0.16 -8.60 16 17 C -0.07 -0.58 0.42 -155.48 -0.06 -0.65 16 18 C -0.10 -0.65 4.87 -27.88 -0.14 -0.78 16 19 C 0.46 4.31 7.75 36.01 0.28 4.58 16 20 O -0.48 -6.48 12.65 -25.80 -0.33 -6.81 16 21 O -0.52 -3.69 13.42 -39.25 -0.53 -4.22 16 22 C -0.15 -0.91 4.82 -26.49 -0.13 -1.04 16 23 C 0.06 0.51 6.62 37.31 0.25 0.76 16 24 O -0.38 -4.28 10.77 -35.23 -0.38 -4.66 16 25 C 0.05 0.59 6.56 37.21 0.24 0.83 16 26 C -0.14 -1.31 4.29 -26.59 -0.11 -1.42 16 27 C -0.12 -2.27 8.66 -39.39 -0.34 -2.61 16 28 C -0.11 -2.28 9.69 -39.61 -0.38 -2.67 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 31 H 0.03 0.76 8.08 -51.93 -0.42 0.34 16 32 H 0.12 2.26 8.06 -52.49 -0.42 1.83 16 33 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 34 H 0.40 3.31 7.65 -40.82 -0.31 3.00 16 35 H 0.12 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.41 1.63 9.10 45.56 0.41 2.04 16 38 H 0.08 0.33 7.03 -51.93 -0.37 -0.03 16 39 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.58 7.38 -51.93 -0.38 0.20 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.07 1.05 6.05 -51.93 -0.31 0.73 16 44 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.10 1.13 6.06 -51.93 -0.31 0.82 16 46 H 0.13 2.56 6.30 -52.49 -0.33 2.23 16 47 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 LS Contribution 379.01 15.07 5.71 5.71 Total: -1.00 -36.69 379.01 -8.64 -45.32 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -5.79 Total: 4.69 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -2.83 Total: -14.14 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: 0.68 Total: -34.34 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -1.40 Total: -24.28 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.69 -8.64 -45.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902839180.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.373 kcal (2) G-P(sol) polarization free energy of solvation -36.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds