Wall clock time and date at job start Wed Apr 1 2020 04:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00083 * 2 1 4 4 H 1.48500 * 109.47272 * 239.99881 * 3 2 1 5 5 H 1.48496 * 109.47322 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46928 * 119.99848 * 3 2 1 7 7 C 1.37883 * 119.99612 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99284 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00309 * 0.02562 * 7 2 1 10 10 C 1.50697 * 109.47079 * 180.02562 * 9 7 2 11 11 C 1.38282 * 119.93243 * 89.99919 * 10 9 7 12 12 C 1.38115 * 120.06867 * 180.02562 * 11 10 9 13 13 C 1.38870 * 119.93064 * 359.97246 * 12 11 10 14 14 N 1.39921 * 120.07270 * 180.02562 * 13 12 11 15 15 C 1.34780 * 120.00411 * 211.45523 * 14 13 12 16 16 O 1.21290 * 119.99747 * 6.51779 * 15 14 13 17 17 C 1.50698 * 120.00180 * 186.24633 * 15 14 13 18 18 C 1.53000 * 109.54279 * 66.82507 * 17 15 14 19 19 C 1.50699 * 109.47235 * 54.62498 * 18 17 15 20 20 O 1.20830 * 119.99834 * 355.26580 * 19 18 17 21 21 O 1.34228 * 120.00295 * 175.26946 * 19 18 17 22 22 C 1.53173 * 109.54412 * 306.65017 * 17 15 14 23 23 C 1.53287 * 109.06355 * 297.02661 * 22 17 15 24 24 O 1.42901 * 109.46106 * 302.44697 * 23 22 17 25 25 C 1.42899 * 114.09599 * 61.15565 * 24 23 22 26 26 C 1.53094 * 109.41848 * 298.84116 * 25 24 23 27 27 C 1.38876 * 119.86170 * 0.28237 * 13 12 11 28 28 C 1.38116 * 119.92234 * 359.46455 * 27 13 12 29 29 H 0.96999 * 120.00083 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47444 * 59.99431 * 9 7 2 31 31 H 1.09004 * 109.46656 * 299.99720 * 9 7 2 32 32 H 1.07997 * 119.96585 * 359.96921 * 11 10 9 33 33 H 1.08002 * 120.03300 * 179.97438 * 12 11 10 34 34 H 0.97001 * 120.00165 * 31.44896 * 14 13 12 35 35 H 1.09002 * 109.47663 * 174.62309 * 18 17 15 36 36 H 1.09001 * 109.47426 * 294.62420 * 18 17 15 37 37 H 0.96702 * 116.99956 * 180.02562 * 21 19 18 38 38 H 1.09000 * 109.52793 * 57.01853 * 22 17 15 39 39 H 1.09002 * 109.52353 * 177.20486 * 22 17 15 40 40 H 1.08998 * 109.45417 * 182.44859 * 23 22 17 41 41 H 1.08996 * 109.46405 * 62.45010 * 23 22 17 42 42 H 1.09002 * 109.48227 * 178.85953 * 25 24 23 43 43 H 1.09004 * 109.49193 * 58.83388 * 25 24 23 44 44 H 1.09003 * 109.51970 * 297.70746 * 26 25 24 45 45 H 1.08998 * 109.57485 * 177.54996 * 26 25 24 46 46 H 1.07998 * 120.03860 * 179.70421 * 27 13 12 47 47 H 1.08000 * 119.96329 * 180.25715 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 6 2.2303 -3.6446 -0.0015 11 6 2.6777 -4.1696 1.1970 12 6 3.5756 -5.2191 1.2005 13 6 4.0286 -5.7474 -0.0012 14 7 4.9379 -6.8109 -0.0011 15 6 5.8395 -6.9269 -0.9962 16 8 5.9424 -6.0489 -1.8266 17 6 6.7239 -8.1446 -1.0736 18 6 5.8718 -9.3772 -1.3829 19 6 5.0672 -9.1308 -2.6331 20 8 5.0996 -8.0482 -3.1688 21 8 4.3146 -10.1139 -3.1515 22 6 7.4429 -8.3415 0.2645 23 6 8.3534 -7.1363 0.5257 24 8 9.2781 -6.9952 -0.5546 25 6 8.6624 -6.7627 -1.8230 26 6 7.7661 -7.9516 -2.1793 27 6 3.5814 -5.2145 -1.2031 28 6 2.6795 -4.1685 -1.1998 29 1 -0.4850 0.8400 0.0004 30 1 0.6246 -2.5564 -0.8919 31 1 0.6240 -2.5575 0.8881 32 1 2.3254 -3.7580 2.1313 33 1 3.9250 -5.6284 2.1369 34 1 4.9194 -7.4647 0.7152 35 1 6.5213 -10.2396 -1.5330 36 1 5.1972 -9.5712 -0.5490 37 1 3.8165 -9.9085 -3.9545 38 1 6.7074 -8.4252 1.0645 39 1 8.0441 -9.2499 0.2248 40 1 8.9012 -7.2899 1.4554 41 1 7.7474 -6.2339 0.6057 42 1 9.4329 -6.6470 -2.5854 43 1 8.0604 -5.8553 -1.7741 44 1 8.3738 -8.8521 -2.2683 45 1 7.2615 -7.7577 -3.1258 46 1 3.9355 -5.6200 -2.1393 47 1 2.3281 -3.7563 -2.1342 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902839180.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:14 Heat of formation + Delta-G solvation = -178.711276 kcal Electronic energy + Delta-G solvation = -31434.868259 eV Core-core repulsion = 27160.146131 eV Total energy + Delta-G solvation = -4274.722128 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.59698 -40.94258 -40.23759 -38.94576 -37.15945 -36.32187 -35.89730 -34.94238 -32.39784 -31.83370 -31.78618 -30.48398 -28.58864 -26.10938 -25.05702 -24.67509 -23.90477 -23.33755 -22.27304 -21.78483 -20.34851 -19.00780 -18.68788 -18.52509 -18.11651 -17.28150 -17.10937 -17.05114 -16.84117 -16.77410 -16.12232 -15.96355 -15.76821 -15.67916 -15.16223 -14.75760 -14.60721 -14.50331 -14.31037 -13.90852 -13.78952 -13.49089 -13.40002 -13.27885 -13.25399 -13.15596 -13.03339 -12.62191 -12.53581 -12.48909 -12.24873 -12.01581 -11.87977 -11.71399 -11.57655 -11.47442 -11.35890 -11.02365 -10.70686 -10.62590 -10.37176 -9.78693 -8.85538 -8.21034 -6.35988 0.43194 0.54409 1.24544 1.36266 1.39379 1.47664 1.68596 1.95908 2.15561 2.37461 2.92099 2.98574 3.07465 3.33661 3.40136 3.60409 3.81748 3.97663 4.05924 4.14124 4.26984 4.30635 4.36175 4.39355 4.45402 4.55495 4.58831 4.61700 4.66719 4.71825 4.74764 4.78427 4.90899 5.01062 5.07618 5.11060 5.17380 5.29499 5.31460 5.41085 5.49187 5.59777 5.67872 5.73092 6.06058 6.10990 6.20882 6.24084 6.50712 6.75985 6.98462 7.26690 7.32295 8.86311 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.014217 B = 0.002767 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.979382 B =10115.663693 C =10912.719682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.006 3.994 3 Si 0.964 3.036 4 H -0.274 1.274 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.532 4.532 8 H 0.049 0.951 9 C 0.059 3.941 10 C -0.076 4.076 11 C -0.112 4.112 12 C -0.128 4.128 13 C 0.126 3.874 14 N -0.660 5.660 15 C 0.516 3.484 16 O -0.537 6.537 17 C -0.060 4.060 18 C -0.100 4.100 19 C 0.460 3.540 20 O -0.534 6.534 21 O -0.514 6.514 22 C -0.137 4.137 23 C 0.046 3.954 24 O -0.394 6.394 25 C 0.053 3.947 26 C -0.132 4.132 27 C -0.127 4.127 28 C -0.123 4.123 29 H 0.267 0.733 30 H -0.002 1.002 31 H 0.010 0.990 32 H 0.128 0.872 33 H 0.164 0.836 34 H 0.424 0.576 35 H 0.159 0.841 36 H 0.143 0.857 37 H 0.424 0.576 38 H 0.113 0.887 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.024 0.976 42 H 0.099 0.901 43 H 0.034 0.966 44 H 0.107 0.893 45 H 0.069 0.931 46 H 0.117 0.883 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.454 -28.733 2.296 33.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.788 3.212 4 H -0.199 1.199 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.570 4.570 8 H 0.068 0.932 9 C 0.022 3.978 10 C -0.077 4.077 11 C -0.131 4.131 12 C -0.148 4.148 13 C 0.032 3.968 14 N -0.308 5.308 15 C 0.304 3.696 16 O -0.411 6.411 17 C -0.063 4.063 18 C -0.137 4.137 19 C 0.303 3.697 20 O -0.424 6.424 21 O -0.328 6.328 22 C -0.175 4.175 23 C -0.030 4.030 24 O -0.313 6.313 25 C -0.023 4.023 26 C -0.170 4.170 27 C -0.147 4.147 28 C -0.142 4.142 29 H 0.075 0.925 30 H 0.016 0.984 31 H 0.029 0.971 32 H 0.146 0.854 33 H 0.182 0.818 34 H 0.264 0.736 35 H 0.177 0.823 36 H 0.161 0.839 37 H 0.285 0.715 38 H 0.131 0.869 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.043 0.957 42 H 0.117 0.883 43 H 0.053 0.947 44 H 0.125 0.875 45 H 0.088 0.912 46 H 0.135 0.865 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 16.837 -27.865 1.897 32.612 hybrid contribution -0.970 1.599 -1.002 2.121 sum 15.867 -26.266 0.895 30.699 Atomic orbital electron populations 1.70063 1.07539 1.28053 1.51149 1.25902 0.95803 1.02983 0.94518 0.85527 0.78373 0.78260 0.79076 1.19892 1.20106 1.18982 1.21350 0.92913 0.91490 1.51201 0.93245 1.18063 0.92823 0.91004 0.95864 1.20385 0.97908 0.95701 0.93682 1.20993 0.98177 0.96495 0.97387 1.21049 0.99510 0.97070 0.97198 1.17562 0.93547 0.92316 0.93351 1.43350 1.32485 1.27169 1.27777 1.21069 0.80013 0.88540 0.79978 1.90710 1.68077 1.42309 1.40020 1.20814 0.94477 0.91264 0.99779 1.21633 0.99027 0.99367 0.93690 1.24080 0.77559 0.81346 0.86684 1.90926 1.62780 1.26834 1.61836 1.84458 1.58006 1.43611 1.46707 1.22431 1.00069 1.01131 0.93824 1.22857 0.92586 0.96541 0.91025 1.87894 1.34013 1.92871 1.16549 1.22655 0.96868 0.97106 0.85706 1.22137 0.96359 1.00360 0.98134 1.20994 0.97498 0.98161 0.98065 1.20883 0.98566 0.97175 0.97586 0.92464 0.98371 0.97127 0.85391 0.81850 0.73628 0.82339 0.83873 0.71516 0.86898 0.85887 0.85747 0.95718 0.88266 0.94742 0.87485 0.91242 0.86525 0.88003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.38 13.29 21.45 0.28 -57.09 16 2 C 0.01 0.37 5.46 84.66 0.46 0.83 16 3 Si 0.96 46.10 29.54 68.60 2.03 48.13 16 4 H -0.27 -12.91 7.11 99.48 0.71 -12.21 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.53 -31.90 9.09 25.60 0.23 -31.67 16 8 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 9 C 0.06 3.33 5.10 29.10 0.15 3.48 16 10 C -0.08 -3.57 5.07 -19.84 -0.10 -3.68 16 11 C -0.11 -4.33 9.69 22.25 0.22 -4.11 16 12 C -0.13 -3.84 9.96 22.39 0.22 -3.62 16 13 C 0.13 3.98 6.31 38.15 0.24 4.22 16 14 N -0.66 -14.21 5.23 -303.50 -1.59 -15.80 16 15 C 0.52 12.56 3.11 87.66 0.27 12.83 16 16 O -0.54 -19.27 10.50 17.09 0.18 -19.09 16 17 C -0.06 -0.83 0.42 -52.81 -0.02 -0.85 16 18 C -0.10 -0.77 4.87 29.85 0.15 -0.63 16 19 C 0.46 7.58 7.75 71.24 0.55 8.13 16 20 O -0.53 -14.55 12.65 28.69 0.36 -14.18 16 21 O -0.51 -6.13 13.42 -51.40 -0.69 -6.82 16 22 C -0.14 -0.97 4.82 30.75 0.15 -0.82 16 23 C 0.05 0.68 6.62 72.08 0.48 1.15 16 24 O -0.39 -8.15 10.77 -148.98 -1.60 -9.76 16 25 C 0.05 1.19 6.56 72.01 0.47 1.66 16 26 C -0.13 -2.32 4.29 30.68 0.13 -2.19 16 27 C -0.13 -5.05 8.66 22.39 0.19 -4.85 16 28 C -0.12 -5.58 9.69 22.25 0.22 -5.36 16 29 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 30 H 0.00 -0.12 8.08 -2.39 -0.02 -0.14 16 31 H 0.01 0.61 8.08 -2.38 -0.02 0.59 16 32 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 33 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 34 H 0.42 4.81 7.65 -92.71 -0.71 4.10 16 35 H 0.16 0.07 8.14 -2.39 -0.02 0.05 16 36 H 0.14 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.42 2.89 9.10 -74.06 -0.67 2.22 16 38 H 0.11 0.12 7.03 -2.39 -0.02 0.11 16 39 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 40 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.02 0.50 7.38 -2.39 -0.02 0.48 16 42 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.03 1.04 6.05 -2.39 -0.01 1.03 16 44 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.07 1.65 6.06 -2.39 -0.01 1.63 16 46 H 0.12 4.94 6.30 -2.91 -0.02 4.93 16 47 H 0.10 4.77 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -88.28 379.01 2.62 -85.66 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -0.36 Total: 14.42 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: 4.01 Total: -25.47 kcal Atomic # 7 Polarization: -71.59 SS G_CDS: -1.30 Total: -72.89 kcal Atomic # 8 Polarization: -48.10 SS G_CDS: -1.75 Total: -49.85 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -88.28 2.62 -85.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902839180.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.050 kcal (2) G-P(sol) polarization free energy of solvation -88.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds