Wall clock time and date at job start Wed Apr 1 2020 04:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86794 * 119.99735 * 2 1 4 4 H 1.48503 * 109.47403 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47163 * 299.99242 * 3 2 1 6 6 H 1.48496 * 109.47673 * 59.99426 * 3 2 1 7 7 C 1.39935 * 120.00060 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99795 * 197.89901 * 7 2 1 9 9 C 1.41438 * 120.00161 * 17.89675 * 7 2 1 10 10 C 1.40785 * 120.17697 * 204.43682 * 9 7 2 11 11 C 1.37708 * 120.04178 * 180.02562 * 10 9 7 12 12 C 1.38378 * 120.40704 * 359.67515 * 11 10 9 13 13 C 1.39874 * 120.35908 * 0.60695 * 12 11 10 14 14 C 1.47890 * 120.02403 * 179.68974 * 13 12 11 15 15 O 1.21555 * 119.99760 * 179.72524 * 14 13 12 16 16 N 1.34773 * 120.00038 * 359.73004 * 14 13 12 17 17 C 1.46500 * 119.99714 * 179.97438 * 16 14 13 18 18 H 1.09001 * 109.47500 * 34.99850 * 17 16 14 19 19 C 1.52999 * 109.47005 * 154.99797 * 17 16 14 20 20 C 1.53004 * 109.47459 * 294.99853 * 19 17 16 21 21 C 1.53185 * 109.54297 * 294.82722 * 20 19 17 22 22 C 1.53097 * 109.15554 * 183.23733 * 21 20 19 23 23 O 1.42904 * 109.48804 * 57.47257 * 22 21 20 24 24 C 1.42904 * 114.09808 * 298.88410 * 23 22 21 25 25 C 1.53096 * 109.41366 * 61.15966 * 24 23 22 26 26 C 1.50703 * 109.47243 * 274.99440 * 17 16 14 27 27 O 1.20821 * 119.99784 * 0.02562 * 26 17 16 28 28 O 1.34223 * 119.99858 * 179.97438 * 26 17 16 29 29 C 1.39027 * 119.95013 * 359.41527 * 13 12 11 30 30 H 0.96993 * 120.00417 * 0.02562 * 1 2 3 31 31 H 1.07997 * 119.98216 * 0.02724 * 10 9 7 32 32 H 1.07996 * 119.79995 * 180.02562 * 11 10 9 33 33 H 1.08000 * 119.81916 * 180.29674 * 12 11 10 34 34 H 0.96994 * 120.00358 * 359.97438 * 16 14 13 35 35 H 1.09001 * 109.47611 * 54.99648 * 19 17 16 36 36 H 1.09004 * 109.47612 * 175.00223 * 19 17 16 37 37 H 1.09000 * 109.53808 * 54.99373 * 20 19 17 38 38 H 1.08997 * 109.51755 * 303.05272 * 21 20 19 39 39 H 1.09000 * 109.52338 * 63.23969 * 21 20 19 40 40 H 1.09000 * 109.40925 * 297.48664 * 22 21 20 41 41 H 1.08999 * 109.48466 * 177.49885 * 22 21 20 42 42 H 1.08994 * 109.48029 * 301.18066 * 24 23 22 43 43 H 1.09001 * 109.49265 * 181.14841 * 24 23 22 44 44 H 1.08994 * 109.52539 * 182.48641 * 25 24 23 45 45 H 1.09006 * 109.57206 * 62.32587 * 25 24 23 46 46 H 0.96707 * 117.00148 * 179.97438 * 28 26 17 47 47 H 1.07997 * 120.20498 * 180.25522 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8835 2.3964 -1.2126 6 1 1.8834 2.3966 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0488 -1.2343 0.2880 9 6 1.3522 -2.4073 -0.3753 10 6 1.8264 -3.6499 0.0863 11 6 1.1861 -4.8121 -0.2818 12 6 0.0710 -4.7685 -1.1002 13 6 -0.4111 -3.5437 -1.5733 14 6 -1.5993 -3.5061 -2.4530 15 8 -2.0209 -2.4411 -2.8599 16 7 -2.2147 -4.6528 -2.8035 17 6 -3.3921 -4.6155 -3.6745 18 1 -3.2821 -3.8094 -4.4000 19 6 -3.5240 -5.9500 -4.4112 20 6 -2.3308 -6.1339 -5.3511 21 6 -2.3729 -5.0651 -6.4477 22 6 -1.2224 -5.3062 -7.4286 23 8 -1.3270 -6.6239 -7.9716 24 6 -1.2450 -7.6650 -6.9962 25 6 -2.3977 -7.5202 -5.9991 26 6 -4.6255 -4.3773 -2.8421 27 8 -4.5307 -4.2511 -1.6442 28 8 -5.8292 -4.3043 -3.4315 29 6 0.2241 -2.3611 -1.2113 30 1 -0.4850 0.8399 -0.0004 31 1 2.6929 -3.6917 0.7295 32 1 1.5529 -5.7632 0.0748 33 1 -0.4267 -5.6855 -1.3791 34 1 -1.8782 -5.5027 -2.4792 35 1 -3.5447 -6.7644 -3.6869 36 1 -4.4471 -5.9555 -4.9907 37 1 -1.4036 -6.0399 -4.7859 38 1 -3.3223 -5.1263 -6.9796 39 1 -2.2692 -4.0776 -5.9981 40 1 -0.2721 -5.2032 -6.9047 41 1 -1.2736 -4.5754 -8.2357 42 1 -0.2951 -7.5930 -6.4665 43 1 -1.3124 -8.6337 -7.4915 44 1 -2.3117 -8.2867 -5.2290 45 1 -3.3481 -7.6329 -6.5208 46 1 -6.5912 -4.1506 -2.8562 47 1 -0.1472 -1.4129 -1.5709 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000910456394.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:55 Heat of formation + Delta-G solvation = -170.454450 kcal Electronic energy + Delta-G solvation = -30969.926645 eV Core-core repulsion = 26695.562560 eV Total energy + Delta-G solvation = -4274.364085 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.71207 -39.53652 -39.00400 -37.15175 -36.12915 -35.98552 -33.87802 -33.52460 -31.34769 -30.83384 -29.54415 -29.32213 -26.38082 -25.30108 -23.82238 -23.05769 -22.77379 -21.13785 -20.73253 -20.16924 -19.70180 -18.09695 -17.81722 -17.03033 -16.28292 -16.21415 -16.11343 -15.95167 -15.35527 -15.08370 -14.98829 -14.80317 -14.65769 -13.98866 -13.97157 -13.76270 -13.27817 -13.19498 -12.85895 -12.66344 -12.54004 -12.46324 -12.33439 -11.95851 -11.66958 -11.52964 -11.46347 -11.20388 -11.17368 -11.10577 -10.77809 -10.64425 -10.61922 -10.50992 -10.39584 -10.08072 -9.72178 -9.70020 -9.24558 -9.17240 -8.97308 -7.67383 -7.54630 -6.81843 -4.43387 2.11653 2.24620 2.77263 2.85430 3.06879 3.11487 3.13478 3.50407 3.70065 3.85231 3.90692 4.26442 4.45994 4.50212 4.61283 4.75206 4.85161 4.95467 5.08079 5.13099 5.25050 5.27958 5.40375 5.46621 5.50682 5.57969 5.59834 5.66820 5.69158 5.75086 5.85879 5.92954 6.04651 6.14391 6.23873 6.49049 6.56374 6.68499 6.95215 6.98051 7.00819 7.18393 7.34811 7.64077 7.69964 7.87184 7.91416 7.98524 8.14969 8.47761 8.76069 8.79867 8.82627 10.12680 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.010951 B = 0.003050 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.164006 B = 9177.932267 C = 9984.919459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.459 4.459 8 H 0.082 0.918 9 C 0.099 3.901 10 C -0.210 4.210 11 C -0.097 4.097 12 C -0.217 4.217 13 C -0.126 4.126 14 C 0.573 3.427 15 O -0.541 6.541 16 N -0.715 5.715 17 C 0.160 3.840 18 H 0.127 0.873 19 C -0.114 4.114 20 C -0.091 4.091 21 C -0.155 4.155 22 C 0.060 3.940 23 O -0.385 6.385 24 C 0.060 3.940 25 C -0.149 4.149 26 C 0.460 3.540 27 O -0.495 6.495 28 O -0.520 6.520 29 C -0.091 4.091 30 H 0.284 0.716 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.405 0.595 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.053 0.947 41 H 0.094 0.906 42 H 0.052 0.948 43 H 0.092 0.908 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.407 0.593 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.132 -12.564 -11.774 18.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.147 4.147 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.488 4.488 8 H 0.100 0.900 9 C 0.096 3.904 10 C -0.230 4.230 11 C -0.115 4.115 12 C -0.237 4.237 13 C -0.129 4.129 14 C 0.365 3.635 15 O -0.419 6.419 16 N -0.370 5.370 17 C 0.051 3.949 18 H 0.144 0.856 19 C -0.152 4.152 20 C -0.109 4.109 21 C -0.193 4.193 22 C -0.016 4.016 23 O -0.304 6.304 24 C -0.017 4.017 25 C -0.187 4.187 26 C 0.299 3.701 27 O -0.381 6.381 28 O -0.331 6.331 29 C -0.111 4.111 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.242 0.758 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.071 0.929 41 H 0.112 0.888 42 H 0.070 0.930 43 H 0.110 0.890 44 H 0.093 0.907 45 H 0.091 0.909 46 H 0.265 0.735 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.295 -11.683 -12.153 18.368 hybrid contribution -0.211 0.531 1.189 1.320 sum -7.506 -11.152 -10.963 17.346 Atomic orbital electron populations 1.69802 1.07592 1.29732 1.33433 1.25978 0.94756 1.01602 0.92316 0.86236 0.80885 0.80808 0.78703 1.18301 1.19542 1.19913 1.19625 0.98269 0.91030 1.39861 0.89995 1.17596 0.91146 0.92494 0.89153 1.21102 1.03531 0.92736 1.05673 1.20426 0.95973 0.96757 0.98364 1.20307 1.01173 0.94515 1.07687 1.19359 0.96258 0.95443 1.01829 1.18912 0.83111 0.82494 0.79008 1.90702 1.66521 1.29729 1.54903 1.45771 1.28177 1.10622 1.52466 1.20374 0.81607 1.01610 0.91262 0.85593 1.21873 1.00297 0.94507 0.98510 1.21220 0.98934 0.94992 0.95765 1.22326 1.00235 0.99707 0.97024 1.22584 0.97409 0.84256 0.97396 1.87918 1.94226 1.14627 1.33629 1.22566 0.97267 0.91202 0.90669 1.22229 1.00244 0.96996 0.99208 1.24301 0.84979 0.72777 0.88091 1.90769 1.86425 1.44356 1.16514 1.84512 1.17734 1.84558 1.46335 1.21632 0.96429 0.96367 0.96682 0.90454 0.88584 0.88871 0.89322 0.75790 0.90517 0.88912 0.89919 0.90741 0.90252 0.92871 0.88799 0.93014 0.89015 0.90704 0.90880 0.73468 0.84847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.86 10.96 55.55 0.61 -20.25 16 2 C 0.07 1.84 5.14 -17.34 -0.09 1.75 16 3 Si 0.91 18.74 29.59 -169.99 -5.03 13.71 16 4 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 7 C -0.46 -12.02 9.05 -37.73 -0.34 -12.36 16 8 H 0.08 2.04 7.91 -52.49 -0.41 1.62 16 9 C 0.10 2.60 5.57 -106.87 -0.60 2.00 16 10 C -0.21 -4.96 9.78 -38.81 -0.38 -5.34 16 11 C -0.10 -2.04 10.01 -39.72 -0.40 -2.44 16 12 C -0.22 -4.50 9.55 -38.92 -0.37 -4.87 16 13 C -0.13 -2.95 5.87 -105.04 -0.62 -3.56 16 14 C 0.57 12.30 7.60 -12.31 -0.09 12.21 16 15 O -0.54 -13.28 16.00 5.32 0.09 -13.20 16 16 N -0.72 -11.39 3.93 -55.86 -0.22 -11.61 16 17 C 0.16 2.11 2.35 -69.08 -0.16 1.95 16 18 H 0.13 1.75 5.86 -51.93 -0.30 1.45 16 19 C -0.11 -1.02 4.19 -26.73 -0.11 -1.14 16 20 C -0.09 -0.81 2.21 -90.43 -0.20 -1.01 16 21 C -0.16 -1.47 5.11 -26.59 -0.14 -1.61 16 22 C 0.06 0.59 6.84 37.21 0.25 0.84 16 23 O -0.39 -4.11 10.77 -35.23 -0.38 -4.49 16 24 C 0.06 0.50 6.84 37.21 0.25 0.75 16 25 C -0.15 -1.11 5.43 -26.59 -0.14 -1.26 16 26 C 0.46 6.76 7.66 36.01 0.28 7.03 16 27 O -0.50 -9.46 17.08 -18.75 -0.32 -9.78 16 28 O -0.52 -5.62 13.23 -39.24 -0.52 -6.14 16 29 C -0.09 -2.42 8.24 -38.44 -0.32 -2.74 16 30 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 31 H 0.10 2.11 8.06 -52.49 -0.42 1.68 16 32 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.09 1.50 6.38 -52.49 -0.33 1.17 16 34 H 0.41 5.62 6.62 -40.82 -0.27 5.35 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 0.73 8.00 -51.93 -0.42 0.31 16 37 H 0.08 0.83 7.62 -51.93 -0.40 0.44 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.85 6.63 -51.93 -0.34 0.50 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.41 2.83 9.10 45.56 0.41 3.24 16 47 H 0.13 3.84 5.74 -52.49 -0.30 3.54 16 LS Contribution 387.73 15.07 5.84 5.84 Total: -1.00 -33.46 387.73 -8.83 -42.29 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -5.73 Total: 13.40 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -3.17 Total: -9.79 kcal Atomic # 7 Polarization: -32.25 SS G_CDS: 0.39 Total: -31.86 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -1.13 Total: -33.60 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.46 -8.83 -42.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910456394.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.162 kcal (2) G-P(sol) polarization free energy of solvation -33.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds