Wall clock time and date at job start Wed Apr 1 2020 04:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86794 * 119.99735 * 2 1 4 4 H 1.48503 * 109.47403 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47163 * 299.99242 * 3 2 1 6 6 H 1.48496 * 109.47673 * 59.99426 * 3 2 1 7 7 C 1.39935 * 120.00060 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99795 * 197.89901 * 7 2 1 9 9 C 1.41438 * 120.00161 * 17.89675 * 7 2 1 10 10 C 1.40785 * 120.17697 * 204.43682 * 9 7 2 11 11 C 1.37708 * 120.04178 * 180.02562 * 10 9 7 12 12 C 1.38378 * 120.40704 * 359.67515 * 11 10 9 13 13 C 1.39874 * 120.35908 * 0.60695 * 12 11 10 14 14 C 1.47890 * 120.02403 * 179.68974 * 13 12 11 15 15 O 1.21555 * 119.99760 * 179.72524 * 14 13 12 16 16 N 1.34773 * 120.00038 * 359.73004 * 14 13 12 17 17 C 1.46500 * 119.99714 * 179.97438 * 16 14 13 18 18 H 1.09001 * 109.47500 * 34.99850 * 17 16 14 19 19 C 1.52999 * 109.47005 * 154.99797 * 17 16 14 20 20 C 1.53004 * 109.47459 * 294.99853 * 19 17 16 21 21 C 1.53185 * 109.54297 * 294.82722 * 20 19 17 22 22 C 1.53097 * 109.15554 * 183.23733 * 21 20 19 23 23 O 1.42904 * 109.48804 * 57.47257 * 22 21 20 24 24 C 1.42904 * 114.09808 * 298.88410 * 23 22 21 25 25 C 1.53096 * 109.41366 * 61.15966 * 24 23 22 26 26 C 1.50703 * 109.47243 * 274.99440 * 17 16 14 27 27 O 1.20821 * 119.99784 * 0.02562 * 26 17 16 28 28 O 1.34223 * 119.99858 * 179.97438 * 26 17 16 29 29 C 1.39027 * 119.95013 * 359.41527 * 13 12 11 30 30 H 0.96993 * 120.00417 * 0.02562 * 1 2 3 31 31 H 1.07997 * 119.98216 * 0.02724 * 10 9 7 32 32 H 1.07996 * 119.79995 * 180.02562 * 11 10 9 33 33 H 1.08000 * 119.81916 * 180.29674 * 12 11 10 34 34 H 0.96994 * 120.00358 * 359.97438 * 16 14 13 35 35 H 1.09001 * 109.47611 * 54.99648 * 19 17 16 36 36 H 1.09004 * 109.47612 * 175.00223 * 19 17 16 37 37 H 1.09000 * 109.53808 * 54.99373 * 20 19 17 38 38 H 1.08997 * 109.51755 * 303.05272 * 21 20 19 39 39 H 1.09000 * 109.52338 * 63.23969 * 21 20 19 40 40 H 1.09000 * 109.40925 * 297.48664 * 22 21 20 41 41 H 1.08999 * 109.48466 * 177.49885 * 22 21 20 42 42 H 1.08994 * 109.48029 * 301.18066 * 24 23 22 43 43 H 1.09001 * 109.49265 * 181.14841 * 24 23 22 44 44 H 1.08994 * 109.52539 * 182.48641 * 25 24 23 45 45 H 1.09006 * 109.57206 * 62.32587 * 25 24 23 46 46 H 0.96707 * 117.00148 * 179.97438 * 28 26 17 47 47 H 1.07997 * 120.20498 * 180.25522 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8835 2.3964 -1.2126 6 1 1.8834 2.3966 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0488 -1.2343 0.2880 9 6 1.3522 -2.4073 -0.3753 10 6 1.8264 -3.6499 0.0863 11 6 1.1861 -4.8121 -0.2818 12 6 0.0710 -4.7685 -1.1002 13 6 -0.4111 -3.5437 -1.5733 14 6 -1.5993 -3.5061 -2.4530 15 8 -2.0209 -2.4411 -2.8599 16 7 -2.2147 -4.6528 -2.8035 17 6 -3.3921 -4.6155 -3.6745 18 1 -3.2821 -3.8094 -4.4000 19 6 -3.5240 -5.9500 -4.4112 20 6 -2.3308 -6.1339 -5.3511 21 6 -2.3729 -5.0651 -6.4477 22 6 -1.2224 -5.3062 -7.4286 23 8 -1.3270 -6.6239 -7.9716 24 6 -1.2450 -7.6650 -6.9962 25 6 -2.3977 -7.5202 -5.9991 26 6 -4.6255 -4.3773 -2.8421 27 8 -4.5307 -4.2511 -1.6442 28 8 -5.8292 -4.3043 -3.4315 29 6 0.2241 -2.3611 -1.2113 30 1 -0.4850 0.8399 -0.0004 31 1 2.6929 -3.6917 0.7295 32 1 1.5529 -5.7632 0.0748 33 1 -0.4267 -5.6855 -1.3791 34 1 -1.8782 -5.5027 -2.4792 35 1 -3.5447 -6.7644 -3.6869 36 1 -4.4471 -5.9555 -4.9907 37 1 -1.4036 -6.0399 -4.7859 38 1 -3.3223 -5.1263 -6.9796 39 1 -2.2692 -4.0776 -5.9981 40 1 -0.2721 -5.2032 -6.9047 41 1 -1.2736 -4.5754 -8.2357 42 1 -0.2951 -7.5930 -6.4665 43 1 -1.3124 -8.6337 -7.4915 44 1 -2.3117 -8.2867 -5.2290 45 1 -3.3481 -7.6329 -6.5208 46 1 -6.5912 -4.1506 -2.8562 47 1 -0.1472 -1.4129 -1.5709 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000910456394.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:54 Heat of formation + Delta-G solvation = -193.095461 kcal Electronic energy + Delta-G solvation = -30970.908433 eV Core-core repulsion = 26695.562560 eV Total energy + Delta-G solvation = -4275.345873 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.92293 -40.59421 -40.26937 -38.86148 -37.29211 -37.06826 -35.65238 -34.77196 -32.44039 -31.96294 -31.32326 -30.71231 -27.43078 -27.06623 -24.63204 -24.51641 -23.66178 -22.86363 -21.97882 -21.37908 -20.85512 -19.61913 -19.15494 -18.25890 -17.79141 -17.44800 -16.99083 -16.87363 -16.73544 -16.56158 -16.39545 -15.78668 -15.56090 -15.50861 -15.46523 -15.05541 -14.70751 -14.48568 -14.29734 -14.18547 -13.57384 -13.49662 -13.30799 -13.15602 -12.98731 -12.81027 -12.72652 -12.61280 -12.54009 -12.19810 -12.17551 -11.97892 -11.91853 -11.81421 -11.52157 -11.32704 -11.13416 -11.09976 -10.89672 -10.48975 -10.35624 -9.51009 -9.40091 -8.68143 -6.39698 0.33000 0.99057 1.08623 1.35238 1.44838 1.51767 1.65649 2.08708 2.17937 2.32916 2.77631 3.01439 3.42287 3.68100 3.71995 3.75211 3.94771 4.02727 4.13094 4.15603 4.25793 4.36036 4.41683 4.50085 4.55658 4.58432 4.73841 4.77111 4.85133 4.87230 4.89958 4.97599 5.06821 5.07090 5.16812 5.17941 5.19779 5.25009 5.30302 5.46757 5.49822 5.52822 5.83623 5.90228 6.03637 6.26382 6.30724 6.41695 6.61671 6.86384 6.88798 6.93111 7.18662 8.28601 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.010951 B = 0.003050 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.164006 B = 9177.932267 C = 9984.919459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.029 3.971 3 Si 0.983 3.017 4 H -0.250 1.250 5 H -0.270 1.270 6 H -0.265 1.265 7 C -0.497 4.497 8 H 0.085 0.915 9 C 0.067 3.933 10 C -0.216 4.216 11 C -0.095 4.095 12 C -0.196 4.196 13 C -0.139 4.139 14 C 0.571 3.429 15 O -0.583 6.583 16 N -0.693 5.693 17 C 0.155 3.845 18 H 0.118 0.882 19 C -0.101 4.101 20 C -0.089 4.089 21 C -0.154 4.154 22 C 0.059 3.941 23 O -0.402 6.402 24 C 0.051 3.949 25 C -0.141 4.141 26 C 0.465 3.535 27 O -0.546 6.546 28 O -0.503 6.503 29 C -0.130 4.130 30 H 0.286 0.714 31 H 0.109 0.891 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.418 0.582 35 H 0.096 0.904 36 H 0.113 0.887 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.044 0.956 41 H 0.098 0.902 42 H 0.049 0.951 43 H 0.108 0.892 44 H 0.094 0.906 45 H 0.080 0.920 46 H 0.427 0.573 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.652 -15.692 -12.390 21.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.186 4.186 3 Si 0.803 3.197 4 H -0.173 1.173 5 H -0.195 1.195 6 H -0.190 1.190 7 C -0.526 4.526 8 H 0.103 0.897 9 C 0.065 3.935 10 C -0.235 4.235 11 C -0.113 4.113 12 C -0.215 4.215 13 C -0.142 4.142 14 C 0.362 3.638 15 O -0.464 6.464 16 N -0.347 5.347 17 C 0.048 3.952 18 H 0.136 0.864 19 C -0.138 4.138 20 C -0.108 4.108 21 C -0.192 4.192 22 C -0.018 4.018 23 O -0.321 6.321 24 C -0.025 4.025 25 C -0.178 4.178 26 C 0.307 3.693 27 O -0.436 6.436 28 O -0.315 6.315 29 C -0.151 4.151 30 H 0.096 0.904 31 H 0.127 0.873 32 H 0.158 0.842 33 H 0.154 0.846 34 H 0.257 0.743 35 H 0.115 0.885 36 H 0.131 0.869 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.116 0.884 42 H 0.068 0.932 43 H 0.126 0.874 44 H 0.113 0.887 45 H 0.099 0.901 46 H 0.288 0.712 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.844 -14.883 -12.789 21.133 hybrid contribution -0.157 1.271 1.293 1.820 sum -8.002 -13.612 -11.496 19.531 Atomic orbital electron populations 1.69910 1.09337 1.30512 1.35474 1.26874 0.95353 1.05052 0.91297 0.85148 0.79730 0.76050 0.78741 1.17257 1.19499 1.19002 1.19898 0.98629 0.92197 1.41865 0.89712 1.17941 0.91743 0.93966 0.89854 1.21419 1.03927 0.92760 1.05424 1.20924 0.95293 0.97755 0.97320 1.20842 1.00355 0.95043 1.05277 1.19711 0.96811 0.95656 1.02010 1.18737 0.82973 0.83345 0.78768 1.90675 1.67563 1.31630 1.56493 1.45481 1.28358 1.09309 1.51571 1.20681 0.80002 1.04107 0.90428 0.86420 1.21894 1.01208 0.92167 0.98554 1.21205 0.98319 0.95851 0.95400 1.22295 1.00523 0.99104 0.97246 1.22586 0.97134 0.84462 0.97604 1.87898 1.94301 1.15079 1.34825 1.22777 0.97665 0.91254 0.90794 1.22182 1.00137 0.96168 0.99357 1.24429 0.86169 0.71423 0.87307 1.90763 1.87274 1.46944 1.18586 1.84457 1.17370 1.83557 1.46147 1.21434 0.98288 0.96344 0.99038 0.90400 0.87304 0.84239 0.84579 0.74304 0.88505 0.86862 0.91076 0.89781 0.92058 0.93813 0.88395 0.93247 0.87355 0.88739 0.90125 0.71176 0.88413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.08 10.96 21.82 0.24 -46.84 16 2 C 0.03 1.53 5.14 85.25 0.44 1.97 16 3 Si 0.98 40.08 29.59 68.60 2.03 42.11 16 4 H -0.25 -9.62 7.11 99.48 0.71 -8.92 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 6 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 7 C -0.50 -27.26 9.05 23.47 0.21 -27.05 16 8 H 0.08 4.38 7.91 -2.91 -0.02 4.36 16 9 C 0.07 3.68 5.57 -21.32 -0.12 3.56 16 10 C -0.22 -10.07 9.78 22.77 0.22 -9.85 16 11 C -0.10 -3.74 10.01 22.18 0.22 -3.51 16 12 C -0.20 -7.63 9.55 22.70 0.22 -7.41 16 13 C -0.14 -6.59 5.87 -20.14 -0.12 -6.71 16 14 C 0.57 24.93 7.60 86.80 0.66 25.59 16 15 O -0.58 -30.04 16.00 -3.89 -0.06 -30.10 16 16 N -0.69 -21.17 3.93 -448.93 -1.77 -22.94 16 17 C 0.15 3.86 2.35 44.25 0.10 3.96 16 18 H 0.12 3.24 5.86 -2.39 -0.01 3.22 16 19 C -0.10 -1.47 4.19 30.60 0.13 -1.34 16 20 C -0.09 -1.35 2.21 -10.67 -0.02 -1.37 16 21 C -0.15 -2.73 5.11 30.69 0.16 -2.57 16 22 C 0.06 1.11 6.84 72.01 0.49 1.61 16 23 O -0.40 -7.94 10.77 -148.98 -1.60 -9.55 16 24 C 0.05 0.72 6.84 72.01 0.49 1.22 16 25 C -0.14 -1.59 5.43 30.68 0.17 -1.43 16 26 C 0.47 13.01 7.66 71.24 0.55 13.55 16 27 O -0.55 -20.57 17.08 21.98 0.38 -20.19 16 28 O -0.50 -9.64 13.23 -51.35 -0.68 -10.32 16 29 C -0.13 -7.32 8.24 23.01 0.19 -7.13 16 30 H 0.29 15.00 8.30 -92.71 -0.77 14.23 16 31 H 0.11 4.69 8.06 -2.91 -0.02 4.66 16 32 H 0.14 4.23 8.06 -2.91 -0.02 4.20 16 33 H 0.14 3.96 6.38 -2.91 -0.02 3.94 16 34 H 0.42 10.33 6.62 -92.71 -0.61 9.71 16 35 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.11 1.29 8.00 -2.39 -0.02 1.28 16 37 H 0.07 1.26 7.62 -2.39 -0.02 1.24 16 38 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.06 1.31 6.63 -2.39 -0.02 1.29 16 40 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 46 H 0.43 4.89 9.10 -74.05 -0.67 4.22 16 47 H 0.10 6.12 5.74 -2.91 -0.02 6.11 16 Total: -1.00 -78.91 387.73 2.26 -76.66 By element: Atomic # 1 Polarization: 38.35 SS G_CDS: -0.26 Total: 38.09 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: 3.99 Total: -16.92 kcal Atomic # 7 Polarization: -68.25 SS G_CDS: -1.53 Total: -69.78 kcal Atomic # 8 Polarization: -68.19 SS G_CDS: -1.97 Total: -70.16 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Total: -78.91 2.26 -76.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910456394.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.440 kcal (2) G-P(sol) polarization free energy of solvation -78.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds