Wall clock time and date at job start Wed Apr 1 2020 04:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31422 * 1 3 3 Si 1.86797 * 120.00184 * 2 1 4 4 H 1.48506 * 109.46775 * 265.74179 * 3 2 1 5 5 H 1.48500 * 109.47449 * 25.73966 * 3 2 1 6 6 H 1.48505 * 109.47305 * 145.74464 * 3 2 1 7 7 C 1.38888 * 119.99745 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00191 * 337.85793 * 7 2 1 9 9 N 1.37138 * 120.00241 * 157.86295 * 7 2 1 10 10 C 1.34781 * 120.00216 * 152.86567 * 9 7 2 11 11 O 1.21275 * 119.99735 * 174.95285 * 10 9 7 12 12 C 1.50693 * 120.00157 * 354.95417 * 10 9 7 13 13 O 1.45197 * 109.47570 * 179.97438 * 12 10 9 14 14 C 1.34223 * 117.00392 * 180.02562 * 13 12 10 15 15 O 1.20824 * 120.00146 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00078 * 179.97438 * 14 13 12 17 17 O 1.42903 * 109.47197 * 324.99928 * 16 14 13 18 18 C 1.53002 * 109.47310 * 85.00001 * 16 14 13 19 19 C 1.52995 * 109.47477 * 180.02562 * 18 16 14 20 20 C 1.53007 * 109.46986 * 299.99665 * 19 18 16 21 21 C 1.53002 * 109.46857 * 60.00260 * 20 19 18 22 22 C 1.52997 * 109.47379 * 204.99828 * 16 14 13 23 23 C 1.39788 * 119.99789 * 332.86844 * 9 7 2 24 24 C 1.38956 * 120.08159 * 117.86578 * 23 9 7 25 25 C 1.38078 * 119.92412 * 179.78763 * 24 23 9 26 26 C 1.38308 * 120.07935 * 0.46812 * 25 24 23 27 27 C 1.38310 * 120.15317 * 359.78854 * 26 25 24 28 28 C 1.38085 * 120.07736 * 359.97260 * 27 26 25 29 29 H 0.97005 * 120.00004 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.46859 * 59.99817 * 12 10 9 31 31 H 1.08998 * 109.47212 * 300.00292 * 12 10 9 32 32 H 0.96700 * 113.99951 * 60.00554 * 17 16 14 33 33 H 1.09007 * 109.46752 * 300.00037 * 18 16 14 34 34 H 1.09000 * 109.47085 * 59.99818 * 18 16 14 35 35 H 1.08998 * 109.47496 * 180.02562 * 19 18 16 36 36 H 1.09000 * 109.47334 * 59.99698 * 19 18 16 37 37 H 1.09000 * 109.47110 * 300.00170 * 20 19 18 38 38 H 1.08994 * 109.47049 * 179.97438 * 20 19 18 39 39 H 1.08994 * 109.46963 * 180.02562 * 21 20 19 40 40 H 1.09000 * 109.47334 * 60.00047 * 21 20 19 41 41 H 1.09006 * 109.47427 * 300.00233 * 22 16 14 42 42 H 1.09000 * 109.47230 * 60.00283 * 22 16 14 43 43 H 1.08005 * 120.03677 * 0.02562 * 24 23 9 44 44 H 1.08004 * 119.96537 * 180.25003 * 25 24 23 45 45 H 1.08001 * 119.92747 * 179.76523 * 26 25 24 46 46 H 1.08001 * 119.96119 * 179.97438 * 27 26 25 47 47 H 1.08004 * 120.03637 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 2.5858 1.9943 -1.3963 5 1 1.4037 2.6770 0.6080 6 1 3.4980 1.4678 0.7881 7 6 2.0086 -1.2028 -0.0005 8 1 1.5283 -2.1038 0.3516 9 7 3.3042 -1.2465 -0.4481 10 6 4.1477 -2.1876 0.0204 11 8 5.2649 -2.2845 -0.4413 12 6 3.7025 -3.1194 1.1179 13 8 4.7820 -4.0341 1.4438 14 6 4.5458 -4.9363 2.4091 15 8 3.4724 -4.9613 2.9631 16 6 5.6190 -5.9189 2.8011 17 8 6.3739 -6.2863 1.6447 18 6 6.5475 -5.2754 3.8330 19 6 7.6375 -6.2727 4.2305 20 6 6.9909 -7.5209 4.8347 21 6 6.0625 -8.1645 3.8027 22 6 4.9721 -7.1667 3.4054 23 6 3.7500 -0.3149 -1.3901 24 6 4.7750 0.5660 -1.0674 25 6 5.2157 1.4820 -2.0019 26 6 4.6317 1.5298 -3.2548 27 6 3.6077 0.6580 -3.5776 28 6 3.1652 -0.2639 -2.6497 29 1 -0.4850 0.8401 0.0004 30 1 2.8345 -3.6871 0.7826 31 1 3.4379 -2.5394 2.0019 32 1 6.8130 -5.5429 1.2092 33 1 7.0084 -4.3863 3.4025 34 1 5.9717 -4.9952 4.7150 35 1 8.2986 -5.8144 4.9660 36 1 8.2132 -6.5525 3.3483 37 1 6.4152 -7.2410 5.7169 38 1 7.7674 -8.2316 5.1174 39 1 5.6016 -9.0534 4.2332 40 1 6.6383 -8.4444 2.9205 41 1 4.3962 -6.8866 4.2875 42 1 4.3107 -7.6253 2.6703 43 1 5.2289 0.5318 -0.0880 44 1 6.0151 2.1643 -1.7531 45 1 4.9759 2.2497 -3.9825 46 1 3.1536 0.6983 -4.5567 47 1 2.3652 -0.9440 -2.9024 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000913289428.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:07 Heat of formation + Delta-G solvation = -136.427744 kcal Electronic energy + Delta-G solvation = -31192.281282 eV Core-core repulsion = 26919.392705 eV Total energy + Delta-G solvation = -4272.888577 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.89934 -39.94233 -38.73410 -37.69127 -36.21429 -35.26749 -34.99176 -32.24964 -31.07720 -30.46836 -30.41194 -29.87788 -27.74671 -25.16692 -24.13728 -22.99632 -22.20189 -22.00643 -20.85307 -19.92420 -19.37145 -18.23314 -18.09157 -16.80094 -16.60440 -16.22103 -16.07373 -15.83866 -15.43300 -15.07572 -14.80599 -14.67534 -14.17515 -13.97430 -13.70964 -13.67501 -13.34554 -13.06944 -12.91371 -12.87649 -12.64790 -12.51284 -12.48091 -12.18100 -12.14228 -11.88229 -11.54846 -11.15681 -11.11832 -11.00439 -10.93661 -10.78124 -10.71621 -10.64929 -10.39138 -10.28734 -10.06633 -9.79606 -9.46997 -9.00643 -8.56065 -8.33955 -7.78645 -6.68445 -4.28149 1.80000 1.93670 2.21576 2.55904 3.06932 3.21995 3.24935 3.39276 3.98729 4.06332 4.07907 4.31987 4.37231 4.41724 4.65099 4.83395 4.91356 4.93917 5.04372 5.17439 5.26887 5.36573 5.37400 5.41810 5.47270 5.54594 5.61912 5.68611 5.70533 5.77233 5.81651 5.85250 5.95043 5.95150 5.99436 6.02027 6.10019 6.24385 6.25663 6.53315 6.58791 6.82914 6.99121 7.03710 7.15168 7.40630 7.50129 7.73403 7.83460 8.05221 8.64261 9.03569 9.31214 10.38930 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.017713 B = 0.002848 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.384024 B = 9828.644880 C =10578.619912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.081 3.919 3 Si 0.862 3.138 4 H -0.251 1.251 5 H -0.291 1.291 6 H -0.260 1.260 7 C -0.367 4.367 8 H 0.115 0.885 9 N -0.414 5.414 10 C 0.480 3.520 11 O -0.561 6.561 12 C 0.071 3.929 13 O -0.336 6.336 14 C 0.434 3.566 15 O -0.501 6.501 16 C 0.159 3.841 17 O -0.540 6.540 18 C -0.145 4.145 19 C -0.112 4.112 20 C -0.122 4.122 21 C -0.114 4.114 22 C -0.097 4.097 23 C 0.158 3.842 24 C -0.126 4.126 25 C -0.117 4.117 26 C -0.138 4.138 27 C -0.114 4.114 28 C -0.109 4.109 29 H 0.280 0.720 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.392 0.608 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.116 0.884 46 H 0.119 0.881 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.248 -7.330 4.669 14.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.129 4.129 3 Si 0.687 3.313 4 H -0.175 1.175 5 H -0.218 1.218 6 H -0.184 1.184 7 C -0.492 4.492 8 H 0.132 0.868 9 N -0.131 5.131 10 C 0.270 3.730 11 O -0.443 6.443 12 C -0.005 4.005 13 O -0.251 6.251 14 C 0.276 3.724 15 O -0.388 6.388 16 C 0.116 3.884 17 O -0.347 6.347 18 C -0.183 4.183 19 C -0.149 4.149 20 C -0.160 4.160 21 C -0.152 4.152 22 C -0.135 4.135 23 C 0.066 3.934 24 C -0.146 4.146 25 C -0.135 4.135 26 C -0.157 4.157 27 C -0.132 4.132 28 C -0.129 4.129 29 H 0.090 0.910 30 H 0.114 0.886 31 H 0.119 0.881 32 H 0.242 0.758 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.094 0.906 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.134 0.866 46 H 0.137 0.863 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 11.027 -7.886 4.765 14.369 hybrid contribution -0.108 1.705 -0.001 1.709 sum 10.919 -6.180 4.764 13.421 Atomic orbital electron populations 1.69764 1.06357 1.28867 1.42675 1.25191 0.95082 0.98719 0.93955 0.87152 0.80099 0.82892 0.81154 1.17483 1.21807 1.18439 1.19222 0.85517 0.97766 1.46689 0.86765 1.41359 1.11045 1.26603 1.34100 1.19781 0.84656 0.84221 0.84312 1.90621 1.20166 1.73185 1.60358 1.22634 0.87865 0.90728 0.99269 1.86428 1.44144 1.42752 1.51751 1.24804 0.89485 0.80797 0.77345 1.90676 1.25746 1.70219 1.52173 1.21080 0.87861 0.92251 0.87184 1.86518 1.67725 1.38780 1.41686 1.22228 0.97688 0.99359 0.99036 1.21438 0.97006 0.95218 1.01245 1.21588 0.98928 0.97140 0.98330 1.21483 0.96693 0.97417 0.99575 1.21482 0.97874 0.92872 1.01236 1.17629 0.94872 0.91551 0.89329 1.21177 0.98236 0.95327 0.99852 1.20847 1.00056 0.98904 0.93729 1.20968 0.97861 1.00107 0.96728 1.20922 0.97335 0.95968 0.99005 1.21189 1.00658 0.99395 0.91635 0.90992 0.88552 0.88061 0.75846 0.90273 0.90195 0.91490 0.90799 0.91937 0.91723 0.91532 0.90695 0.89357 0.90600 0.86291 0.86401 0.86622 0.86263 0.85352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.62 13.96 55.49 0.77 -21.85 16 2 C 0.08 2.09 5.20 -17.49 -0.09 2.00 16 3 Si 0.86 20.11 23.47 -169.99 -3.99 16.13 16 4 H -0.25 -5.70 5.26 56.52 0.30 -5.40 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.26 -6.04 6.11 56.52 0.35 -5.70 16 7 C -0.37 -9.27 9.12 -14.94 -0.14 -9.41 16 8 H 0.11 2.96 6.90 -52.49 -0.36 2.60 16 9 N -0.41 -9.87 2.49 -58.98 -0.15 -10.01 16 10 C 0.48 11.05 7.53 -10.99 -0.08 10.97 16 11 O -0.56 -13.80 16.07 -14.10 -0.23 -14.03 16 12 C 0.07 1.44 4.62 36.00 0.17 1.60 16 13 O -0.34 -6.17 9.19 -48.33 -0.44 -6.61 16 14 C 0.43 7.14 6.83 36.00 0.25 7.39 16 15 O -0.50 -9.31 15.84 -18.75 -0.30 -9.60 16 16 C 0.16 2.00 0.94 -91.77 -0.09 1.91 16 17 O -0.54 -6.70 11.55 -49.12 -0.57 -7.26 16 18 C -0.15 -1.51 4.90 -26.73 -0.13 -1.64 16 19 C -0.11 -0.94 5.78 -26.73 -0.15 -1.10 16 20 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 21 C -0.11 -1.03 5.78 -26.70 -0.15 -1.19 16 22 C -0.10 -1.11 4.48 -26.71 -0.12 -1.23 16 23 C 0.16 3.60 2.29 -83.70 -0.19 3.41 16 24 C -0.13 -2.67 5.86 -39.37 -0.23 -2.90 16 25 C -0.12 -2.10 9.55 -39.61 -0.38 -2.48 16 26 C -0.14 -2.32 9.73 -39.53 -0.38 -2.70 16 27 C -0.11 -2.02 9.63 -39.61 -0.38 -2.41 16 28 C -0.11 -2.29 8.48 -39.37 -0.33 -2.63 16 29 H 0.28 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.10 1.93 7.48 -51.93 -0.39 1.54 16 31 H 0.10 2.00 8.13 -51.93 -0.42 1.58 16 32 H 0.39 4.28 8.63 45.56 0.39 4.68 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.64 7.68 -51.93 -0.40 0.24 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.73 7.68 -51.93 -0.40 0.33 16 41 H 0.09 1.00 7.87 -51.93 -0.41 0.59 16 42 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.12 2.54 7.72 -52.48 -0.40 2.13 16 44 H 0.12 1.73 8.06 -52.48 -0.42 1.31 16 45 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 46 H 0.12 1.74 8.06 -52.49 -0.42 1.31 16 47 H 0.13 2.70 8.06 -52.48 -0.42 2.27 16 LS Contribution 377.30 15.07 5.69 5.69 Total: -1.00 -30.54 377.30 -8.15 -38.68 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -6.34 Total: 10.40 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -2.60 Total: -1.53 kcal Atomic # 7 Polarization: -32.49 SS G_CDS: 0.63 Total: -31.86 kcal Atomic # 8 Polarization: -35.98 SS G_CDS: -1.53 Total: -37.51 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -3.99 Total: 16.13 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.54 -8.15 -38.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000913289428.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.743 kcal (2) G-P(sol) polarization free energy of solvation -30.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds