Wall clock time and date at job start Wed Apr 1 2020 04:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31422 * 1 3 3 Si 1.86797 * 120.00184 * 2 1 4 4 H 1.48506 * 109.46775 * 265.74179 * 3 2 1 5 5 H 1.48500 * 109.47449 * 25.73966 * 3 2 1 6 6 H 1.48505 * 109.47305 * 145.74464 * 3 2 1 7 7 C 1.38888 * 119.99745 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00191 * 337.85793 * 7 2 1 9 9 N 1.37138 * 120.00241 * 157.86295 * 7 2 1 10 10 C 1.34781 * 120.00216 * 152.86567 * 9 7 2 11 11 O 1.21275 * 119.99735 * 174.95285 * 10 9 7 12 12 C 1.50693 * 120.00157 * 354.95417 * 10 9 7 13 13 O 1.45197 * 109.47570 * 179.97438 * 12 10 9 14 14 C 1.34223 * 117.00392 * 180.02562 * 13 12 10 15 15 O 1.20824 * 120.00146 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00078 * 179.97438 * 14 13 12 17 17 O 1.42903 * 109.47197 * 324.99928 * 16 14 13 18 18 C 1.53002 * 109.47310 * 85.00001 * 16 14 13 19 19 C 1.52995 * 109.47477 * 180.02562 * 18 16 14 20 20 C 1.53007 * 109.46986 * 299.99665 * 19 18 16 21 21 C 1.53002 * 109.46857 * 60.00260 * 20 19 18 22 22 C 1.52997 * 109.47379 * 204.99828 * 16 14 13 23 23 C 1.39788 * 119.99789 * 332.86844 * 9 7 2 24 24 C 1.38956 * 120.08159 * 117.86578 * 23 9 7 25 25 C 1.38078 * 119.92412 * 179.78763 * 24 23 9 26 26 C 1.38308 * 120.07935 * 0.46812 * 25 24 23 27 27 C 1.38310 * 120.15317 * 359.78854 * 26 25 24 28 28 C 1.38085 * 120.07736 * 359.97260 * 27 26 25 29 29 H 0.97005 * 120.00004 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.46859 * 59.99817 * 12 10 9 31 31 H 1.08998 * 109.47212 * 300.00292 * 12 10 9 32 32 H 0.96700 * 113.99951 * 60.00554 * 17 16 14 33 33 H 1.09007 * 109.46752 * 300.00037 * 18 16 14 34 34 H 1.09000 * 109.47085 * 59.99818 * 18 16 14 35 35 H 1.08998 * 109.47496 * 180.02562 * 19 18 16 36 36 H 1.09000 * 109.47334 * 59.99698 * 19 18 16 37 37 H 1.09000 * 109.47110 * 300.00170 * 20 19 18 38 38 H 1.08994 * 109.47049 * 179.97438 * 20 19 18 39 39 H 1.08994 * 109.46963 * 180.02562 * 21 20 19 40 40 H 1.09000 * 109.47334 * 60.00047 * 21 20 19 41 41 H 1.09006 * 109.47427 * 300.00233 * 22 16 14 42 42 H 1.09000 * 109.47230 * 60.00283 * 22 16 14 43 43 H 1.08005 * 120.03677 * 0.02562 * 24 23 9 44 44 H 1.08004 * 119.96537 * 180.25003 * 25 24 23 45 45 H 1.08001 * 119.92747 * 179.76523 * 26 25 24 46 46 H 1.08001 * 119.96119 * 179.97438 * 27 26 25 47 47 H 1.08004 * 120.03637 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 2.5858 1.9943 -1.3963 5 1 1.4037 2.6770 0.6080 6 1 3.4980 1.4678 0.7881 7 6 2.0086 -1.2028 -0.0005 8 1 1.5283 -2.1038 0.3516 9 7 3.3042 -1.2465 -0.4481 10 6 4.1477 -2.1876 0.0204 11 8 5.2649 -2.2845 -0.4413 12 6 3.7025 -3.1194 1.1179 13 8 4.7820 -4.0341 1.4438 14 6 4.5458 -4.9363 2.4091 15 8 3.4724 -4.9613 2.9631 16 6 5.6190 -5.9189 2.8011 17 8 6.3739 -6.2863 1.6447 18 6 6.5475 -5.2754 3.8330 19 6 7.6375 -6.2727 4.2305 20 6 6.9909 -7.5209 4.8347 21 6 6.0625 -8.1645 3.8027 22 6 4.9721 -7.1667 3.4054 23 6 3.7500 -0.3149 -1.3901 24 6 4.7750 0.5660 -1.0674 25 6 5.2157 1.4820 -2.0019 26 6 4.6317 1.5298 -3.2548 27 6 3.6077 0.6580 -3.5776 28 6 3.1652 -0.2639 -2.6497 29 1 -0.4850 0.8401 0.0004 30 1 2.8345 -3.6871 0.7826 31 1 3.4379 -2.5394 2.0019 32 1 6.8130 -5.5429 1.2092 33 1 7.0084 -4.3863 3.4025 34 1 5.9717 -4.9952 4.7150 35 1 8.2986 -5.8144 4.9660 36 1 8.2132 -6.5525 3.3483 37 1 6.4152 -7.2410 5.7169 38 1 7.7674 -8.2316 5.1174 39 1 5.6016 -9.0534 4.2332 40 1 6.6383 -8.4444 2.9205 41 1 4.3962 -6.8866 4.2875 42 1 4.3107 -7.6253 2.6703 43 1 5.2289 0.5318 -0.0880 44 1 6.0151 2.1643 -1.7531 45 1 4.9759 2.2497 -3.9825 46 1 3.1536 0.6983 -4.5567 47 1 2.3652 -0.9440 -2.9024 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000913289428.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:06 Heat of formation + Delta-G solvation = -154.245871 kcal Electronic energy + Delta-G solvation = -31193.053934 eV Core-core repulsion = 26919.392705 eV Total energy + Delta-G solvation = -4273.661229 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.23383 -41.57632 -39.89425 -39.22864 -37.68757 -36.82632 -36.15323 -34.19644 -31.91303 -31.88023 -31.71212 -31.15303 -29.31585 -27.08508 -25.27498 -23.82260 -23.64850 -23.49342 -22.00762 -21.17995 -20.81221 -19.95075 -19.39265 -18.25414 -17.94044 -17.85609 -17.63413 -17.13378 -17.00762 -16.42821 -16.17798 -15.80200 -15.49816 -15.41377 -15.24587 -14.81200 -14.71260 -14.47098 -14.38820 -14.19905 -14.11253 -13.84408 -13.76441 -13.40591 -13.25137 -13.10403 -12.89020 -12.65925 -12.52321 -12.50150 -12.21482 -12.01786 -11.97626 -11.84927 -11.76334 -11.41840 -11.28631 -11.15454 -10.90417 -10.78830 -10.40359 -9.84654 -9.44091 -8.66932 -6.28146 0.28033 0.43947 0.87401 1.13886 1.21978 1.32093 1.38535 1.57240 2.15752 2.41869 2.72852 2.95951 3.08022 3.30890 3.51607 3.61280 3.69789 3.97153 4.01702 4.05070 4.08836 4.14536 4.16439 4.20580 4.24765 4.38736 4.48421 4.52414 4.58356 4.62914 4.65642 4.77979 4.94724 5.01109 5.07915 5.12989 5.18754 5.21716 5.24507 5.29711 5.31984 5.46242 5.54046 5.55145 5.55675 5.80785 5.93660 6.20472 6.34121 6.54614 6.71233 7.12217 7.45883 8.43597 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.017713 B = 0.002848 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.384024 B = 9828.644880 C =10578.619912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.050 3.950 3 Si 0.911 3.089 4 H -0.237 1.237 5 H -0.294 1.294 6 H -0.264 1.264 7 C -0.367 4.367 8 H 0.095 0.905 9 N -0.420 5.420 10 C 0.477 3.523 11 O -0.581 6.581 12 C 0.079 3.921 13 O -0.340 6.340 14 C 0.430 3.570 15 O -0.526 6.526 16 C 0.164 3.836 17 O -0.542 6.542 18 C -0.143 4.143 19 C -0.108 4.108 20 C -0.121 4.121 21 C -0.109 4.109 22 C -0.100 4.100 23 C 0.120 3.880 24 C -0.146 4.146 25 C -0.115 4.115 26 C -0.124 4.124 27 C -0.110 4.110 28 C -0.132 4.132 29 H 0.284 0.716 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.397 0.603 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.087 0.913 42 H 0.061 0.939 43 H 0.107 0.893 44 H 0.155 0.845 45 H 0.165 0.835 46 H 0.155 0.845 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.597 -6.289 4.044 15.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.158 4.158 3 Si 0.735 3.265 4 H -0.161 1.161 5 H -0.222 1.222 6 H -0.189 1.189 7 C -0.493 4.493 8 H 0.113 0.887 9 N -0.137 5.137 10 C 0.268 3.732 11 O -0.464 6.464 12 C 0.002 3.998 13 O -0.255 6.255 14 C 0.273 3.727 15 O -0.414 6.414 16 C 0.121 3.879 17 O -0.350 6.350 18 C -0.181 4.181 19 C -0.145 4.145 20 C -0.159 4.159 21 C -0.146 4.146 22 C -0.137 4.137 23 C 0.030 3.970 24 C -0.166 4.166 25 C -0.133 4.133 26 C -0.142 4.142 27 C -0.128 4.128 28 C -0.152 4.152 29 H 0.094 0.906 30 H 0.110 0.890 31 H 0.119 0.881 32 H 0.248 0.752 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.106 0.894 42 H 0.080 0.920 43 H 0.125 0.875 44 H 0.173 0.827 45 H 0.182 0.818 46 H 0.173 0.827 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 13.391 -6.845 4.125 15.595 hybrid contribution -0.786 1.346 0.103 1.562 sum 12.605 -5.499 4.227 14.388 Atomic orbital electron populations 1.69818 1.07442 1.29682 1.44495 1.25663 0.95453 1.00981 0.93689 0.86374 0.78731 0.79757 0.81594 1.16082 1.22164 1.18850 1.19101 0.86146 0.97269 1.46743 0.88738 1.41382 1.10474 1.27150 1.34741 1.20107 0.84443 0.84157 0.84534 1.90580 1.20858 1.73750 1.61241 1.22387 0.88235 0.90742 0.98398 1.86463 1.43422 1.42967 1.52693 1.25894 0.90223 0.80424 0.76149 1.90656 1.27065 1.70833 1.52878 1.21298 0.87114 0.91753 0.87719 1.86515 1.67472 1.39130 1.41877 1.22261 0.97779 0.99866 0.98165 1.21454 0.96337 0.94957 1.01732 1.21610 0.99167 0.97140 0.97938 1.21476 0.96042 0.97252 0.99845 1.21560 0.98604 0.92822 1.00721 1.17974 0.96707 0.92397 0.89972 1.21284 0.98337 0.96526 1.00485 1.21347 1.00420 0.98093 0.93459 1.21555 0.96114 0.99628 0.96917 1.21393 0.97189 0.94595 0.99657 1.21306 1.00971 1.00780 0.92125 0.90642 0.89027 0.88110 0.75191 0.90428 0.90095 0.89736 0.90878 0.91423 0.89862 0.89963 0.91281 0.89405 0.91991 0.87519 0.82716 0.81773 0.82719 0.86787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.44 13.96 21.65 0.30 -48.14 16 2 C 0.05 2.61 5.20 84.91 0.44 3.05 16 3 Si 0.91 41.78 23.47 68.60 1.61 43.39 16 4 H -0.24 -10.21 5.26 99.48 0.52 -9.69 16 5 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 6 H -0.26 -12.11 6.11 99.48 0.61 -11.51 16 7 C -0.37 -19.36 9.12 84.02 0.77 -18.59 16 8 H 0.09 5.22 6.90 -2.91 -0.02 5.20 16 9 N -0.42 -20.70 2.49 -458.91 -1.14 -21.84 16 10 C 0.48 22.83 7.53 87.65 0.66 23.49 16 11 O -0.58 -29.33 16.07 15.78 0.25 -29.08 16 12 C 0.08 3.36 4.62 71.23 0.33 3.69 16 13 O -0.34 -13.00 9.19 -42.66 -0.39 -13.39 16 14 C 0.43 14.61 6.83 71.23 0.49 15.10 16 15 O -0.53 -20.33 15.84 21.97 0.35 -19.98 16 16 C 0.16 4.12 0.94 -11.54 -0.01 4.11 16 17 O -0.54 -13.35 11.55 -135.70 -1.57 -14.91 16 18 C -0.14 -2.85 4.90 30.59 0.15 -2.70 16 19 C -0.11 -1.59 5.78 30.59 0.18 -1.41 16 20 C -0.12 -1.63 5.92 30.60 0.18 -1.44 16 21 C -0.11 -1.79 5.78 30.61 0.18 -1.61 16 22 C -0.10 -2.24 4.48 30.61 0.14 -2.11 16 23 C 0.12 5.49 2.29 38.22 0.09 5.57 16 24 C -0.15 -6.04 5.86 22.40 0.13 -5.91 16 25 C -0.11 -3.71 9.55 22.25 0.21 -3.50 16 26 C -0.12 -3.55 9.73 22.30 0.22 -3.34 16 27 C -0.11 -3.56 9.63 22.25 0.21 -3.34 16 28 C -0.13 -5.48 8.48 22.41 0.19 -5.29 16 29 H 0.28 14.59 8.31 -92.70 -0.77 13.82 16 30 H 0.09 3.94 7.48 -2.38 -0.02 3.92 16 31 H 0.10 4.24 8.13 -2.39 -0.02 4.22 16 32 H 0.40 8.70 8.63 -74.06 -0.64 8.06 16 33 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 1.12 7.68 -2.39 -0.02 1.10 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.07 1.24 7.68 -2.39 -0.02 1.22 16 41 H 0.09 1.97 7.87 -2.38 -0.02 1.95 16 42 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.11 4.56 7.72 -2.91 -0.02 4.53 16 44 H 0.16 3.79 8.06 -2.91 -0.02 3.77 16 45 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 46 H 0.16 3.83 8.06 -2.91 -0.02 3.80 16 47 H 0.11 4.92 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -68.09 377.30 4.02 -64.06 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: 0.06 Total: 34.13 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 4.55 Total: 5.76 kcal Atomic # 7 Polarization: -69.14 SS G_CDS: -0.84 Total: -69.98 kcal Atomic # 8 Polarization: -76.00 SS G_CDS: -1.36 Total: -77.36 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 1.61 Total: 43.39 kcal Total: -68.09 4.02 -64.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000913289428.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.182 kcal (2) G-P(sol) polarization free energy of solvation -68.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds