Wall clock time and date at job start Wed Apr 1 2020 05:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00275 * 2 1 4 4 H 1.48501 * 109.47080 * 270.00568 * 3 2 1 5 5 H 1.48502 * 109.47018 * 30.00199 * 3 2 1 6 6 H 1.48501 * 109.47144 * 150.00476 * 3 2 1 7 7 C 1.37887 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99728 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99710 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.46763 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46935 * 179.97438 * 10 9 7 12 12 O 1.45200 * 109.46908 * 180.02562 * 11 10 9 13 13 C 1.34229 * 116.99871 * 180.02562 * 12 11 10 14 14 O 1.20821 * 119.99988 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99904 * 180.02562 * 13 12 11 16 16 O 1.42906 * 109.46847 * 180.02562 * 15 13 12 17 17 C 1.35904 * 116.99730 * 180.02562 * 16 15 13 18 18 C 1.38805 * 120.02123 * 0.02562 * 17 16 15 19 19 C 1.38167 * 120.08555 * 180.02562 * 18 17 16 20 20 C 1.38166 * 120.12314 * 359.67792 * 19 18 17 21 21 C 1.38894 * 120.03867 * 0.60516 * 20 19 18 22 22 N 1.39919 * 120.04349 * 179.69556 * 21 20 19 23 23 C 1.46766 * 124.35134 * 173.99944 * 22 21 20 24 24 C 1.54474 * 105.47197 * 162.98565 * 23 22 21 25 25 C 1.54618 * 101.76838 * 25.41322 * 24 23 22 26 26 C 1.34415 * 124.34759 * 353.99673 * 22 21 20 27 27 O 1.21290 * 124.94592 * 0.67819 * 26 22 21 28 28 C 1.38577 * 120.01730 * 179.97438 * 17 16 15 29 29 H 0.97009 * 120.00097 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47031 * 59.99648 * 9 7 2 31 31 H 1.09003 * 109.46761 * 299.99843 * 9 7 2 32 32 H 1.09007 * 109.46952 * 60.00009 * 10 9 7 33 33 H 1.08998 * 109.47407 * 300.00312 * 10 9 7 34 34 H 1.09000 * 109.46404 * 60.00801 * 11 10 9 35 35 H 1.08990 * 109.47148 * 300.00235 * 11 10 9 36 36 H 1.08996 * 109.47211 * 59.99968 * 15 13 12 37 37 H 1.08997 * 109.46966 * 299.99281 * 15 13 12 38 38 H 1.08004 * 119.95781 * 359.97438 * 18 17 16 39 39 H 1.07998 * 119.94038 * 180.02562 * 19 18 17 40 40 H 1.07993 * 119.98226 * 180.29500 * 20 19 18 41 41 H 1.09000 * 110.24106 * 43.97923 * 23 22 21 42 42 H 1.09005 * 110.31606 * 282.02234 * 23 22 21 43 43 H 1.09006 * 110.96388 * 267.29180 * 24 23 22 44 44 H 1.08997 * 110.99926 * 143.54952 * 24 23 22 45 45 H 1.08999 * 110.48817 * 216.52208 * 25 24 23 46 46 H 1.09001 * 110.48871 * 93.88298 * 25 24 23 47 47 H 1.08006 * 120.06099 * 0.03633 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6366 -0.0010 11 6 5.5515 -2.6367 -0.0022 12 8 6.0354 -4.0057 -0.0027 13 6 7.3661 -4.1816 -0.0033 14 8 8.1021 -3.2235 -0.0038 15 6 7.9420 -5.5742 -0.0044 16 8 9.3691 -5.4994 -0.0042 17 6 10.0486 -6.6764 -0.0057 18 6 9.3549 -7.8787 -0.0078 19 6 10.0444 -9.0761 -0.0088 20 6 11.4260 -9.0807 -0.0143 21 6 12.1253 -7.8807 -0.0063 22 7 13.5245 -7.8853 -0.0055 23 6 14.3567 -6.6822 -0.1240 24 6 15.7629 -7.1048 0.3558 25 6 15.7468 -8.6258 0.0783 26 6 14.2792 -8.9922 0.1040 27 8 13.8466 -10.1209 0.2035 28 6 11.4344 -6.6769 -0.0061 29 1 -0.4851 0.8401 0.0004 30 1 3.8751 -0.6805 0.8888 31 1 3.8744 -0.6801 -0.8912 32 1 3.6577 -3.1507 -0.8908 33 1 3.6584 -3.1503 0.8892 34 1 5.9154 -2.1226 0.8874 35 1 5.9141 -2.1232 -0.8926 36 1 7.6058 -6.1057 -0.8946 37 1 7.6064 -6.1069 0.8854 38 1 8.2749 -7.8783 -0.0079 39 1 9.5023 -10.0102 -0.0108 40 1 11.9625 -10.0179 -0.0199 41 1 13.9641 -5.8881 0.5111 42 1 14.3961 -6.3500 -1.1615 43 1 15.8887 -6.9037 1.4197 44 1 16.5396 -6.6101 -0.2273 45 1 16.2874 -9.1617 0.8585 46 1 16.1763 -8.8397 -0.9004 47 1 11.9757 -5.7423 -0.0047 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914619361.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:45 Heat of formation + Delta-G solvation = -127.595163 kcal Electronic energy + Delta-G solvation = -28375.363792 eV Core-core repulsion = 24102.858225 eV Total energy + Delta-G solvation = -4272.505567 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.63116 -40.74609 -39.88436 -37.82775 -37.09179 -36.51250 -34.14878 -33.49804 -31.95769 -31.27304 -29.39146 -29.12388 -28.26212 -27.33978 -23.98950 -23.54061 -22.94696 -21.87445 -21.18925 -20.39306 -20.13853 -18.78060 -17.72895 -17.39442 -17.11631 -17.10392 -16.77534 -16.67920 -16.43706 -15.83487 -15.62028 -14.99930 -14.63366 -14.42407 -14.32692 -14.22732 -14.12828 -14.03781 -13.53008 -13.38122 -13.02304 -12.90044 -12.76340 -12.40850 -12.37449 -12.17165 -11.97260 -11.81649 -11.58585 -11.45657 -11.11362 -11.02599 -10.62699 -10.56461 -10.52199 -10.18643 -10.05537 -9.86721 -9.76870 -9.28684 -8.85183 -8.59727 -8.32992 -6.09931 -4.09293 0.77643 1.05832 1.86441 2.03775 2.06996 2.26901 3.27608 3.30580 3.35583 3.38520 3.41068 3.62074 3.75408 4.12656 4.29187 4.33988 4.40271 4.53345 4.61461 4.64874 4.71280 4.79945 4.80221 4.90214 4.93857 5.04206 5.11518 5.14870 5.20834 5.23224 5.28314 5.38007 5.39252 5.73628 5.77631 5.84284 5.89063 6.14168 6.21421 6.32585 6.44717 6.54161 6.56266 6.73078 6.92963 7.16156 7.27660 7.46466 7.65653 7.72962 8.46233 8.94097 9.51412 11.03153 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.029954 B = 0.001417 C = 0.001357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.550877 B =19750.120417 C =20629.705843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.102 4.102 11 C 0.068 3.932 12 O -0.351 6.351 13 C 0.460 3.540 14 O -0.490 6.490 15 C 0.068 3.932 16 O -0.293 6.293 17 C 0.159 3.841 18 C -0.232 4.232 19 C -0.049 4.049 20 C -0.193 4.193 21 C 0.202 3.798 22 N -0.558 5.558 23 C 0.091 3.909 24 C -0.131 4.131 25 C -0.153 4.153 26 C 0.516 3.484 27 O -0.508 6.508 28 C -0.188 4.188 29 H 0.264 0.736 30 H 0.019 0.981 31 H 0.015 0.985 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.156 0.844 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.108 0.892 46 H 0.110 0.890 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.606 -18.931 -0.232 38.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.092 0.908 9 C -0.048 4.048 10 C -0.139 4.139 11 C -0.005 4.005 12 O -0.268 6.268 13 C 0.301 3.699 14 O -0.377 6.377 15 C -0.008 4.008 16 O -0.206 6.206 17 C 0.113 3.887 18 C -0.252 4.252 19 C -0.068 4.068 20 C -0.213 4.213 21 C 0.108 3.892 22 N -0.282 5.282 23 C -0.031 4.031 24 C -0.169 4.169 25 C -0.193 4.193 26 C 0.306 3.694 27 O -0.383 6.383 28 C -0.209 4.209 29 H 0.074 0.926 30 H 0.038 0.962 31 H 0.033 0.967 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.173 0.827 41 H 0.109 0.891 42 H 0.103 0.897 43 H 0.106 0.894 44 H 0.116 0.884 45 H 0.127 0.873 46 H 0.129 0.871 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 33.504 -18.882 -0.176 38.459 hybrid contribution 0.124 1.109 -0.041 1.117 sum 33.629 -17.773 -0.217 38.037 Atomic orbital electron populations 1.69905 1.06291 1.27014 1.50709 1.25010 0.94748 0.99166 0.94403 0.86788 0.80376 0.83589 0.78612 1.20194 1.21243 1.18986 1.21048 0.88990 0.94701 1.51390 0.90763 1.19525 0.97584 0.90951 0.96745 1.21586 0.88433 1.00936 1.02978 1.23598 0.97144 0.77347 1.02417 1.86452 1.21993 1.35039 1.83340 1.22757 0.82038 0.91075 0.74002 1.90705 1.60603 1.42605 1.43750 1.21934 0.79895 0.93286 1.05659 1.86066 1.17879 1.28021 1.88628 1.18530 0.90934 0.84148 0.95107 1.21313 1.00670 0.92030 1.11158 1.20850 0.93373 0.97604 0.94960 1.21547 0.94581 0.98268 1.06880 1.17354 0.80890 0.93695 0.97297 1.45808 1.03897 1.09630 1.68829 1.22343 0.90318 0.87350 1.03097 1.22632 0.96177 0.94671 1.03434 1.22353 0.93475 0.97655 1.05786 1.21142 0.89570 0.83790 0.74900 1.90648 1.77966 1.21527 1.48155 1.19804 0.91351 0.97344 1.12443 0.92610 0.96228 0.96658 0.91404 0.91370 0.91230 0.91239 0.87385 0.87399 0.84878 0.84980 0.82680 0.89110 0.89710 0.89443 0.88375 0.87334 0.87143 0.84643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.52 -14.70 9.66 -34.44 -0.33 -15.03 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 10 C -0.10 -1.95 5.53 -26.73 -0.15 -2.10 16 11 C 0.07 1.13 5.47 37.16 0.20 1.33 16 12 O -0.35 -5.26 10.22 -39.26 -0.40 -5.66 16 13 C 0.46 6.45 8.03 36.01 0.29 6.74 16 14 O -0.49 -8.53 16.25 -25.47 -0.41 -8.94 16 15 C 0.07 0.67 5.33 36.01 0.19 0.86 16 16 O -0.29 -3.44 9.67 -39.39 -0.38 -3.82 16 17 C 0.16 1.63 6.68 -39.25 -0.26 1.37 16 18 C -0.23 -2.02 9.04 -39.40 -0.36 -2.37 16 19 C -0.05 -0.42 10.03 -39.63 -0.40 -0.82 16 20 C -0.19 -1.92 9.29 -39.37 -0.37 -2.29 16 21 C 0.20 1.92 6.59 -83.72 -0.55 1.37 16 22 N -0.56 -4.20 3.14 -112.28 -0.35 -4.55 16 23 C 0.09 0.35 6.50 -3.12 -0.02 0.33 16 24 C -0.13 -0.22 7.18 -25.11 -0.18 -0.40 16 25 C -0.15 -0.51 6.86 -26.75 -0.18 -0.69 16 26 C 0.52 4.12 7.92 -10.86 -0.09 4.03 16 27 O -0.51 -5.83 14.81 5.55 0.08 -5.75 16 28 C -0.19 -1.81 9.35 -39.25 -0.37 -2.18 16 29 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 31 H 0.02 0.35 7.57 -51.93 -0.39 -0.05 16 32 H 0.07 1.29 8.14 -51.92 -0.42 0.86 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.07 1.15 8.13 -51.93 -0.42 0.73 16 35 H 0.07 1.14 8.13 -51.93 -0.42 0.72 16 36 H 0.11 0.79 7.66 -51.93 -0.40 0.39 16 37 H 0.11 0.79 7.66 -51.93 -0.40 0.40 16 38 H 0.13 0.87 6.29 -52.48 -0.33 0.54 16 39 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.16 1.70 5.25 -52.49 -0.28 1.43 16 41 H 0.09 0.31 7.24 -51.93 -0.38 -0.07 16 42 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16 44 H 0.10 -0.02 8.14 -51.93 -0.42 -0.45 16 45 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 47 H 0.14 1.14 6.74 -52.48 -0.35 0.78 16 LS Contribution 392.47 15.07 5.91 5.91 Total: -1.00 -35.90 392.47 -8.93 -44.84 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -6.71 Total: -3.80 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -2.78 Total: -8.31 kcal Atomic # 7 Polarization: -31.69 SS G_CDS: 0.42 Total: -31.27 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -1.11 Total: -24.17 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.90 -8.93 -44.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914619361.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.759 kcal (2) G-P(sol) polarization free energy of solvation -35.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds