Wall clock time and date at job start Wed Apr 1 2020 05:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00275 * 2 1 4 4 H 1.48501 * 109.47080 * 270.00568 * 3 2 1 5 5 H 1.48502 * 109.47018 * 30.00199 * 3 2 1 6 6 H 1.48501 * 109.47144 * 150.00476 * 3 2 1 7 7 C 1.37887 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99728 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99710 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.46763 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46935 * 179.97438 * 10 9 7 12 12 O 1.45200 * 109.46908 * 180.02562 * 11 10 9 13 13 C 1.34229 * 116.99871 * 180.02562 * 12 11 10 14 14 O 1.20821 * 119.99988 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99904 * 180.02562 * 13 12 11 16 16 O 1.42906 * 109.46847 * 180.02562 * 15 13 12 17 17 C 1.35904 * 116.99730 * 180.02562 * 16 15 13 18 18 C 1.38805 * 120.02123 * 0.02562 * 17 16 15 19 19 C 1.38167 * 120.08555 * 180.02562 * 18 17 16 20 20 C 1.38166 * 120.12314 * 359.67792 * 19 18 17 21 21 C 1.38894 * 120.03867 * 0.60516 * 20 19 18 22 22 N 1.39919 * 120.04349 * 179.69556 * 21 20 19 23 23 C 1.46766 * 124.35134 * 173.99944 * 22 21 20 24 24 C 1.54474 * 105.47197 * 162.98565 * 23 22 21 25 25 C 1.54618 * 101.76838 * 25.41322 * 24 23 22 26 26 C 1.34415 * 124.34759 * 353.99673 * 22 21 20 27 27 O 1.21290 * 124.94592 * 0.67819 * 26 22 21 28 28 C 1.38577 * 120.01730 * 179.97438 * 17 16 15 29 29 H 0.97009 * 120.00097 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47031 * 59.99648 * 9 7 2 31 31 H 1.09003 * 109.46761 * 299.99843 * 9 7 2 32 32 H 1.09007 * 109.46952 * 60.00009 * 10 9 7 33 33 H 1.08998 * 109.47407 * 300.00312 * 10 9 7 34 34 H 1.09000 * 109.46404 * 60.00801 * 11 10 9 35 35 H 1.08990 * 109.47148 * 300.00235 * 11 10 9 36 36 H 1.08996 * 109.47211 * 59.99968 * 15 13 12 37 37 H 1.08997 * 109.46966 * 299.99281 * 15 13 12 38 38 H 1.08004 * 119.95781 * 359.97438 * 18 17 16 39 39 H 1.07998 * 119.94038 * 180.02562 * 19 18 17 40 40 H 1.07993 * 119.98226 * 180.29500 * 20 19 18 41 41 H 1.09000 * 110.24106 * 43.97923 * 23 22 21 42 42 H 1.09005 * 110.31606 * 282.02234 * 23 22 21 43 43 H 1.09006 * 110.96388 * 267.29180 * 24 23 22 44 44 H 1.08997 * 110.99926 * 143.54952 * 24 23 22 45 45 H 1.08999 * 110.48817 * 216.52208 * 25 24 23 46 46 H 1.09001 * 110.48871 * 93.88298 * 25 24 23 47 47 H 1.08006 * 120.06099 * 0.03633 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6366 -0.0010 11 6 5.5515 -2.6367 -0.0022 12 8 6.0354 -4.0057 -0.0027 13 6 7.3661 -4.1816 -0.0033 14 8 8.1021 -3.2235 -0.0038 15 6 7.9420 -5.5742 -0.0044 16 8 9.3691 -5.4994 -0.0042 17 6 10.0486 -6.6764 -0.0057 18 6 9.3549 -7.8787 -0.0078 19 6 10.0444 -9.0761 -0.0088 20 6 11.4260 -9.0807 -0.0143 21 6 12.1253 -7.8807 -0.0063 22 7 13.5245 -7.8853 -0.0055 23 6 14.3567 -6.6822 -0.1240 24 6 15.7629 -7.1048 0.3558 25 6 15.7468 -8.6258 0.0783 26 6 14.2792 -8.9922 0.1040 27 8 13.8466 -10.1209 0.2035 28 6 11.4344 -6.6769 -0.0061 29 1 -0.4851 0.8401 0.0004 30 1 3.8751 -0.6805 0.8888 31 1 3.8744 -0.6801 -0.8912 32 1 3.6577 -3.1507 -0.8908 33 1 3.6584 -3.1503 0.8892 34 1 5.9154 -2.1226 0.8874 35 1 5.9141 -2.1232 -0.8926 36 1 7.6058 -6.1057 -0.8946 37 1 7.6064 -6.1069 0.8854 38 1 8.2749 -7.8783 -0.0079 39 1 9.5023 -10.0102 -0.0108 40 1 11.9625 -10.0179 -0.0199 41 1 13.9641 -5.8881 0.5111 42 1 14.3961 -6.3500 -1.1615 43 1 15.8887 -6.9037 1.4197 44 1 16.5396 -6.6101 -0.2273 45 1 16.2874 -9.1617 0.8585 46 1 16.1763 -8.8397 -0.9004 47 1 11.9757 -5.7423 -0.0047 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914619361.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:44 Heat of formation + Delta-G solvation = -148.527096 kcal Electronic energy + Delta-G solvation = -28376.271469 eV Core-core repulsion = 24102.858225 eV Total energy + Delta-G solvation = -4273.413244 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.20165 -41.74255 -40.74092 -38.59805 -37.81647 -37.55384 -35.95380 -33.95573 -33.90324 -32.04185 -30.28528 -29.85938 -28.95438 -28.58586 -25.10000 -24.38589 -23.89090 -22.44385 -22.14719 -21.97795 -20.89349 -19.48513 -19.00154 -18.66732 -18.14717 -17.89288 -17.78935 -17.38788 -17.21730 -16.83845 -16.43892 -16.23154 -15.70745 -15.58916 -15.19293 -14.88171 -14.81375 -14.68991 -14.61036 -14.46209 -14.05281 -13.97633 -13.74313 -13.59131 -13.48153 -12.96197 -12.87547 -12.61665 -12.43529 -12.40561 -12.22435 -12.08453 -11.98986 -11.94440 -11.77226 -11.47925 -11.41237 -11.36002 -11.10187 -10.79734 -10.77613 -9.55107 -8.98725 -8.30316 -6.35315 0.11472 0.33784 0.95497 0.99037 1.36905 1.38536 1.46555 1.49950 1.71141 2.35509 2.46105 2.72845 3.05119 3.25386 3.40209 3.51811 3.77427 3.94755 3.95886 3.96085 4.00071 4.02691 4.04735 4.11394 4.19212 4.29578 4.36884 4.42152 4.54266 4.58789 4.67780 4.71189 4.73620 4.83259 4.95586 5.05499 5.09354 5.14971 5.20486 5.25366 5.27640 5.46304 5.47568 5.48825 5.62035 5.76914 5.99887 6.21673 6.25586 6.57045 6.72858 6.89142 7.29367 8.86131 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.029954 B = 0.001417 C = 0.001357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.550877 B =19750.120417 C =20629.705843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.007 3.993 3 Si 0.949 3.051 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.246 1.246 7 C -0.535 4.535 8 H 0.037 0.963 9 C -0.010 4.010 10 C -0.093 4.093 11 C 0.075 3.925 12 O -0.349 6.349 13 C 0.462 3.538 14 O -0.528 6.528 15 C 0.071 3.929 16 O -0.315 6.315 17 C 0.146 3.854 18 C -0.230 4.230 19 C -0.049 4.049 20 C -0.212 4.212 21 C 0.192 3.808 22 N -0.563 5.563 23 C 0.081 3.919 24 C -0.118 4.118 25 C -0.144 4.144 26 C 0.501 3.499 27 O -0.554 6.554 28 C -0.196 4.196 29 H 0.267 0.733 30 H 0.025 0.975 31 H 0.025 0.975 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.159 0.841 39 H 0.154 0.846 40 H 0.141 0.859 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.126 0.874 45 H 0.118 0.882 46 H 0.128 0.872 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.084 -18.475 -0.347 40.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.772 3.228 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.169 1.169 7 C -0.573 4.573 8 H 0.055 0.945 9 C -0.048 4.048 10 C -0.130 4.130 11 C 0.002 3.998 12 O -0.266 6.266 13 C 0.305 3.695 14 O -0.417 6.417 15 C -0.004 4.004 16 O -0.229 6.229 17 C 0.101 3.899 18 C -0.250 4.250 19 C -0.068 4.068 20 C -0.232 4.232 21 C 0.097 3.903 22 N -0.285 5.285 23 C -0.039 4.039 24 C -0.156 4.156 25 C -0.184 4.184 26 C 0.293 3.707 27 O -0.432 6.432 28 C -0.217 4.217 29 H 0.076 0.924 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.157 0.843 37 H 0.156 0.844 38 H 0.177 0.823 39 H 0.171 0.829 40 H 0.159 0.841 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.111 0.889 44 H 0.144 0.856 45 H 0.136 0.864 46 H 0.146 0.854 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 36.013 -18.429 -0.293 40.455 hybrid contribution -0.679 0.857 -0.011 1.094 sum 35.334 -17.572 -0.305 39.463 Atomic orbital electron populations 1.70058 1.08289 1.28232 1.52377 1.25985 0.95597 1.03456 0.94023 0.85684 0.79553 0.78315 0.79271 1.19122 1.20962 1.16936 1.21418 0.91726 0.93394 1.50756 0.94499 1.19459 0.94295 0.93803 0.97241 1.21335 0.90448 0.98370 1.02873 1.23264 0.95209 0.78495 1.02802 1.86434 1.22995 1.33713 1.83464 1.23571 0.81107 0.92462 0.72366 1.90693 1.61111 1.44214 1.45647 1.22156 0.79194 0.90523 1.08523 1.86015 1.18785 1.29014 1.89068 1.18702 0.91158 0.84226 0.95836 1.21556 1.01904 0.91224 1.10276 1.21118 0.92918 0.98701 0.94042 1.21618 0.95509 0.98037 1.08047 1.17516 0.82168 0.93517 0.97086 1.46100 1.03461 1.10915 1.68040 1.22650 0.91047 0.86194 1.04047 1.22677 0.95357 0.93262 1.04267 1.22423 0.89936 0.98935 1.07101 1.22084 0.91583 0.83227 0.73793 1.90613 1.79118 1.23286 1.50209 1.19928 0.91568 0.97592 1.12638 0.92418 0.95621 0.95712 0.91553 0.91574 0.90947 0.90863 0.84319 0.84381 0.82347 0.82874 0.84144 0.88796 0.88645 0.88891 0.85583 0.86364 0.85448 0.84012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.06 13.96 21.45 0.30 -58.76 16 2 C 0.01 0.38 5.47 84.66 0.46 0.84 16 3 Si 0.95 43.62 27.47 68.60 1.88 45.51 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.25 -10.46 6.54 99.48 0.65 -9.81 16 7 C -0.54 -30.38 9.66 25.60 0.25 -30.13 16 8 H 0.04 2.29 7.99 -2.91 -0.02 2.27 16 9 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 10 C -0.09 -3.45 5.53 30.59 0.17 -3.28 16 11 C 0.08 2.39 5.47 71.98 0.39 2.78 16 12 O -0.35 -9.73 10.22 -51.41 -0.53 -10.25 16 13 C 0.46 12.02 8.03 71.24 0.57 12.59 16 14 O -0.53 -17.72 16.25 28.41 0.46 -17.26 16 15 C 0.07 1.20 5.33 71.24 0.38 1.58 16 16 O -0.31 -6.85 9.67 -73.39 -0.71 -7.56 16 17 C 0.15 2.80 6.68 22.49 0.15 2.95 16 18 C -0.23 -3.53 9.04 22.39 0.20 -3.33 16 19 C -0.05 -0.79 10.03 22.24 0.22 -0.57 16 20 C -0.21 -4.30 9.29 22.41 0.21 -4.09 16 21 C 0.19 3.67 6.59 38.14 0.25 3.93 16 22 N -0.56 -8.34 3.14 -627.74 -1.97 -10.31 16 23 C 0.08 0.51 6.50 86.83 0.56 1.07 16 24 C -0.12 -0.10 7.18 31.65 0.23 0.13 16 25 C -0.14 -0.72 6.86 30.58 0.21 -0.51 16 26 C 0.50 8.04 7.92 87.90 0.70 8.74 16 27 O -0.55 -13.42 14.81 -3.06 -0.05 -13.46 16 28 C -0.20 -3.67 9.35 22.48 0.21 -3.46 16 29 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 30 H 0.03 1.13 7.20 -2.39 -0.02 1.11 16 31 H 0.02 1.07 7.57 -2.39 -0.02 1.06 16 32 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 33 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.07 2.26 8.13 -2.39 -0.02 2.24 16 35 H 0.07 2.27 8.13 -2.39 -0.02 2.25 16 36 H 0.14 1.51 7.66 -2.39 -0.02 1.50 16 37 H 0.14 1.52 7.66 -2.39 -0.02 1.50 16 38 H 0.16 1.50 6.29 -2.91 -0.02 1.49 16 39 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 40 H 0.14 3.30 5.25 -2.91 -0.02 3.28 16 41 H 0.09 0.52 7.24 -2.39 -0.02 0.51 16 42 H 0.10 0.39 8.14 -2.38 -0.02 0.37 16 43 H 0.09 0.01 8.14 -2.38 -0.02 -0.01 16 44 H 0.13 -0.54 8.14 -2.39 -0.02 -0.55 16 45 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 46 H 0.13 0.23 8.14 -2.39 -0.02 0.21 16 47 H 0.14 2.32 6.74 -2.91 -0.02 2.30 16 Total: -1.00 -80.67 392.47 5.62 -75.06 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 0.93 Total: 8.16 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: 5.29 Total: -11.12 kcal Atomic # 7 Polarization: -67.40 SS G_CDS: -1.67 Total: -69.07 kcal Atomic # 8 Polarization: -47.71 SS G_CDS: -0.82 Total: -48.53 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.88 Total: 45.51 kcal Total: -80.67 5.62 -75.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914619361.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.470 kcal (2) G-P(sol) polarization free energy of solvation -80.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds