Wall clock time and date at job start Wed Apr 1 2020 05:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86803 * 120.00058 * 2 1 4 4 H 1.48503 * 109.47208 * 240.00302 * 3 2 1 5 5 H 1.48511 * 109.47031 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47221 * 120.00021 * 3 2 1 7 7 C 1.39888 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99712 * 197.93369 * 7 2 1 9 9 C 1.41215 * 120.00093 * 17.92429 * 7 2 1 10 10 C 1.40834 * 120.17646 * 24.55741 * 9 7 2 11 11 C 1.36441 * 119.80994 * 180.02562 * 10 9 7 12 12 C 1.39305 * 120.18225 * 0.26831 * 11 10 9 13 13 O 1.35683 * 119.81261 * 179.72110 * 12 11 10 14 14 C 1.42897 * 116.99685 * 180.02562 * 13 12 11 15 15 C 1.53005 * 109.47198 * 180.02562 * 14 13 12 16 16 H 1.08995 * 109.47122 * 54.99885 * 15 14 13 17 17 O 1.42903 * 109.46409 * 295.00037 * 15 14 13 18 18 C 1.52992 * 109.47366 * 175.00193 * 15 14 13 19 19 N 1.46901 * 109.47133 * 184.99634 * 18 15 14 20 20 C 1.46904 * 110.99769 * 179.97438 * 19 18 15 21 21 C 1.53002 * 109.46885 * 180.02562 * 20 19 18 22 22 H 1.09000 * 109.47233 * 60.00273 * 21 20 19 23 23 O 1.42900 * 109.47311 * 300.00457 * 21 20 19 24 24 C 1.50694 * 109.47198 * 180.02562 * 21 20 19 25 25 C 1.34509 * 125.79383 * 264.99837 * 24 21 20 26 26 C 1.41386 * 106.84330 * 180.02562 * 25 24 21 27 27 C 1.34505 * 106.84006 * 0.02562 * 26 25 24 28 28 O 1.34305 * 108.42420 * 359.74098 * 27 26 25 29 29 C 1.39313 * 120.36750 * 359.45584 * 12 11 10 30 30 C 1.36431 * 120.18311 * 0.54396 * 29 12 11 31 31 H 0.97005 * 119.99879 * 359.97438 * 1 2 3 32 32 H 1.07999 * 120.09550 * 359.97438 * 10 9 7 33 33 H 1.08000 * 119.90585 * 179.97438 * 11 10 9 34 34 H 1.09005 * 109.47270 * 300.00435 * 14 13 12 35 35 H 1.09002 * 109.47423 * 60.00265 * 14 13 12 36 36 H 0.96698 * 114.00229 * 299.99729 * 17 15 14 37 37 H 1.08999 * 109.46992 * 304.99633 * 18 15 14 38 38 H 1.09004 * 109.47453 * 64.99389 * 18 15 14 39 39 H 1.00896 * 110.99980 * 303.95518 * 19 18 15 40 40 H 1.08997 * 109.47237 * 299.99993 * 20 19 18 41 41 H 1.08996 * 109.46789 * 60.00620 * 20 19 18 42 42 H 0.96696 * 114.00096 * 299.99844 * 23 21 20 43 43 H 1.08007 * 126.57840 * 0.03926 * 25 24 21 44 44 H 1.08001 * 126.57482 * 179.97438 * 26 25 24 45 45 H 1.07997 * 125.78927 * 180.02562 * 27 26 25 46 46 H 1.08003 * 119.90742 * 180.27503 * 29 12 11 47 47 H 1.07999 * 120.09537 * 179.70842 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0966 1.6965 -1.2126 5 1 1.2778 2.7465 0.0006 6 1 3.0966 1.6964 1.2125 7 6 2.0083 -1.2115 -0.0005 8 1 3.0490 -1.2342 0.2875 9 6 1.3536 -2.4046 -0.3774 10 6 0.2246 -2.3575 -1.2179 11 6 -0.4025 -3.5148 -1.5770 12 6 0.0678 -4.7402 -1.1101 13 8 -0.5649 -5.8860 -1.4673 14 6 -0.0321 -7.1084 -0.9537 15 6 -0.8705 -8.2834 -1.4613 16 1 -0.9171 -8.2530 -2.5498 17 8 -2.1920 -8.1921 -0.9251 18 6 -0.2287 -9.5984 -1.0148 19 7 -0.9647 -10.7264 -1.6012 20 6 -0.3749 -12.0087 -1.1938 21 6 -1.1662 -13.1569 -1.8232 22 1 -1.1314 -13.0698 -2.9092 23 8 -2.5246 -13.0964 -1.3838 24 6 -0.5616 -14.4723 -1.4048 25 6 0.3426 -15.1807 -2.1048 26 6 0.6310 -16.3391 -1.3472 27 6 -0.1147 -16.2696 -0.2299 28 8 -0.8311 -15.1342 -0.2676 29 6 1.1875 -4.7959 -0.2830 30 6 1.8260 -3.6479 0.0854 31 1 -0.4850 0.8401 0.0004 32 1 -0.1443 -1.4079 -1.5766 33 1 -1.2687 -3.4805 -2.2211 34 1 0.9982 -7.2255 -1.2901 35 1 -0.0582 -7.0869 0.1358 36 1 -2.2268 -8.2130 0.0410 37 1 0.8084 -9.6283 -1.3488 38 1 -0.2623 -9.6685 0.0725 39 1 -1.9432 -10.6848 -1.3588 40 1 0.6611 -12.0550 -1.5294 41 1 -0.4094 -12.0956 -0.1078 42 1 -2.6316 -13.1679 -0.4255 43 1 0.7671 -14.9153 -3.0618 44 1 1.3175 -17.1287 -1.6149 45 1 -0.1308 -17.0005 0.5651 46 1 1.5484 -5.7503 0.0711 47 1 2.6910 -3.6925 0.7305 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915223363.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:33 Heat of formation + Delta-G solvation = -126.862907 kcal Electronic energy + Delta-G solvation = -28460.053292 eV Core-core repulsion = 24187.579477 eV Total energy + Delta-G solvation = -4272.473814 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.55709 -40.66417 -39.38681 -38.59335 -37.67344 -35.70096 -35.17659 -34.05195 -32.38190 -31.80106 -31.12686 -30.70124 -28.45684 -26.77185 -25.62999 -23.56581 -23.15801 -22.72945 -22.45080 -22.18520 -21.47615 -19.25417 -19.03895 -18.76743 -17.86085 -17.60602 -17.31426 -17.02008 -16.89892 -16.79239 -16.07311 -15.95685 -15.73826 -15.67567 -15.36346 -14.87662 -14.78034 -14.11779 -14.07956 -13.97998 -13.90397 -13.79423 -13.65226 -13.47149 -13.37066 -13.08468 -12.78741 -12.76658 -12.63619 -12.50467 -12.37699 -11.91600 -11.72452 -11.59650 -11.50124 -11.20434 -10.98571 -10.88422 -10.86135 -9.56040 -9.51098 -9.43993 -8.92296 -8.59150 -6.22574 0.70895 0.95799 1.02904 1.40076 1.50944 1.55215 1.65010 1.93702 2.23025 2.40168 2.73165 3.14872 3.35884 3.46411 3.70377 3.73685 3.86184 3.95068 4.02745 4.03183 4.07494 4.13838 4.26073 4.29221 4.34620 4.36669 4.46727 4.62189 4.68328 4.73623 4.86839 4.87235 4.99998 5.03901 5.08504 5.14701 5.22035 5.28550 5.55036 5.58911 5.64613 5.86427 5.88600 6.05890 6.10783 6.26631 6.34348 6.56800 6.59667 6.77546 6.82907 6.95299 7.10703 8.37231 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.033699 B = 0.001392 C = 0.001359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.678150 B =20111.548498 C =20601.804366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.034 3.966 3 Si 0.982 3.018 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.500 4.500 8 H 0.077 0.923 9 C 0.054 3.946 10 C -0.152 4.152 11 C -0.135 4.135 12 C 0.000 4.000 13 O -0.331 6.331 14 C 0.030 3.970 15 C 0.122 3.878 16 H 0.100 0.900 17 O -0.567 6.567 18 C 0.043 3.957 19 N -0.686 5.686 20 C 0.038 3.962 21 C 0.203 3.797 22 H 0.133 0.867 23 O -0.561 6.561 24 C -0.063 4.063 25 C -0.209 4.209 26 C -0.229 4.229 27 C -0.040 4.040 28 O -0.188 6.188 29 C -0.165 4.165 30 C -0.208 4.208 31 H 0.287 0.713 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.384 0.616 37 H 0.093 0.907 38 H 0.051 0.949 39 H 0.354 0.646 40 H 0.091 0.909 41 H 0.041 0.959 42 H 0.389 0.611 43 H 0.161 0.839 44 H 0.167 0.833 45 H 0.236 0.764 46 H 0.130 0.870 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.463 -29.156 0.592 29.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.194 1.194 6 H -0.183 1.183 7 C -0.530 4.530 8 H 0.095 0.905 9 C 0.052 3.948 10 C -0.172 4.172 11 C -0.154 4.154 12 C -0.044 4.044 13 O -0.247 6.247 14 C -0.046 4.046 15 C 0.062 3.938 16 H 0.118 0.882 17 O -0.374 6.374 18 C -0.087 4.087 19 N -0.320 5.320 20 C -0.092 4.092 21 C 0.143 3.857 22 H 0.150 0.850 23 O -0.368 6.368 24 C -0.114 4.114 25 C -0.228 4.228 26 C -0.248 4.248 27 C -0.107 4.107 28 O -0.085 6.085 29 C -0.183 4.183 30 C -0.227 4.227 31 H 0.098 0.902 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.233 0.767 37 H 0.112 0.888 38 H 0.069 0.931 39 H 0.174 0.826 40 H 0.109 0.891 41 H 0.060 0.940 42 H 0.238 0.762 43 H 0.179 0.821 44 H 0.185 0.815 45 H 0.252 0.748 46 H 0.148 0.852 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.045 -28.812 -1.142 28.835 hybrid contribution 0.675 0.542 2.079 2.253 sum 0.630 -28.270 0.937 28.292 Atomic orbital electron populations 1.69889 1.09000 1.30533 1.36407 1.26737 0.95460 1.04485 0.91322 0.85261 0.78744 0.75717 0.80017 1.18562 1.19361 1.18329 1.19697 0.98395 0.92431 1.42494 0.90505 1.17959 0.92661 0.93413 0.90795 1.20896 0.99355 0.96352 1.00583 1.20011 1.01234 0.90758 1.03348 1.18694 0.96429 0.85533 1.03744 1.85885 1.54910 1.12855 1.71044 1.23488 0.98622 0.83564 0.98965 1.21839 0.81842 0.90403 0.99668 0.88227 1.86629 1.27495 1.96464 1.26787 1.22418 0.99128 0.89302 0.97826 1.60195 1.07928 1.00684 1.63160 1.22600 0.99813 0.88645 0.98110 1.20476 0.80375 0.84510 1.00346 0.84978 1.86615 1.24987 1.95704 1.29460 1.23418 1.02321 0.98399 0.87221 1.21968 1.01454 0.96424 1.02999 1.22210 1.05197 1.01073 0.96333 1.24821 0.94961 0.88825 1.02101 1.83964 1.56211 1.30772 1.37520 1.20698 0.97113 0.98703 1.01813 1.20804 1.03730 0.92534 1.05661 0.90209 0.87296 0.87639 0.91049 0.91755 0.76702 0.88835 0.93062 0.82584 0.89081 0.94038 0.76155 0.82145 0.81547 0.74819 0.85216 0.87562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.24 10.96 21.82 0.24 -44.00 16 2 C 0.03 1.73 5.13 85.23 0.44 2.17 16 3 Si 0.98 38.48 29.60 68.60 2.03 40.51 16 4 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 5 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 6 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 7 C -0.50 -27.18 9.04 23.40 0.21 -26.97 16 8 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 9 C 0.05 2.95 5.57 -21.28 -0.12 2.83 16 10 C -0.15 -8.28 8.64 22.49 0.19 -8.08 16 11 C -0.13 -6.71 9.92 22.11 0.22 -6.49 16 12 C 0.00 -0.01 6.71 22.79 0.15 0.15 16 13 O -0.33 -13.10 10.09 -85.36 -0.86 -13.97 16 14 C 0.03 0.82 4.36 71.98 0.31 1.14 16 15 C 0.12 2.75 3.49 30.59 0.11 2.86 16 16 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 17 O -0.57 -13.76 12.82 -144.33 -1.85 -15.61 16 18 C 0.04 0.67 5.36 86.30 0.46 1.13 16 19 N -0.69 -10.83 6.50 -513.89 -3.34 -14.17 16 20 C 0.04 0.48 5.37 86.30 0.46 0.94 16 21 C 0.20 2.75 3.70 29.85 0.11 2.86 16 22 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 23 O -0.56 -8.58 12.65 -144.47 -1.83 -10.41 16 24 C -0.06 -0.93 6.20 24.83 0.15 -0.77 16 25 C -0.21 -2.89 10.81 22.19 0.24 -2.65 16 26 C -0.23 -2.68 10.91 22.19 0.24 -2.44 16 27 C -0.04 -0.43 12.09 66.97 0.81 0.38 16 28 O -0.19 -2.81 10.52 1.92 0.02 -2.79 16 29 C -0.16 -7.15 8.96 22.11 0.20 -6.95 16 30 C -0.21 -10.13 9.74 22.48 0.22 -9.91 16 31 H 0.29 13.87 8.30 -92.70 -0.77 13.10 16 32 H 0.11 6.15 6.16 -2.91 -0.02 6.13 16 33 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 34 H 0.07 1.81 7.63 -2.38 -0.02 1.79 16 35 H 0.06 1.63 7.66 -2.39 -0.02 1.61 16 36 H 0.38 6.56 9.05 -74.06 -0.67 5.89 16 37 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 39 H 0.35 6.03 7.68 -89.70 -0.69 5.34 16 40 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.39 3.83 8.93 -74.06 -0.66 3.17 16 43 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 44 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 45 H 0.24 0.61 8.06 -2.91 -0.02 0.58 16 46 H 0.13 4.55 6.27 -2.91 -0.02 4.53 16 47 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -69.19 399.20 -2.17 -71.36 By element: Atomic # 1 Polarization: 39.88 SS G_CDS: -1.00 Total: 38.88 kcal Atomic # 6 Polarization: -54.22 SS G_CDS: 4.42 Total: -49.81 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: -3.10 Total: -58.18 kcal Atomic # 8 Polarization: -38.24 SS G_CDS: -4.52 Total: -42.76 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.51 kcal Total: -69.19 -2.17 -71.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915223363.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.503 kcal (2) G-P(sol) polarization free energy of solvation -69.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds