Wall clock time and date at job start Wed Apr 1 2020 04:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86795 * 120.00072 * 2 1 4 4 H 1.48504 * 109.47049 * 269.99637 * 3 2 1 5 5 H 1.48496 * 109.47730 * 29.99763 * 3 2 1 6 6 H 1.48505 * 109.47141 * 150.00208 * 3 2 1 7 7 C 1.38658 * 119.99502 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99134 * 179.97438 * 7 2 1 9 9 O 1.34827 * 120.00044 * 359.97438 * 7 2 1 10 10 C 1.35749 * 116.99456 * 185.05429 * 9 7 2 11 11 C 1.38880 * 120.07298 * 354.46622 * 10 9 7 12 12 C 1.38102 * 119.92885 * 179.97438 * 11 10 9 13 13 C 1.38295 * 120.07057 * 0.02562 * 12 11 10 14 14 C 1.50705 * 119.92931 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47102 * 89.99852 * 14 13 12 16 16 O 1.21279 * 120.00176 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99848 * 179.97438 * 15 14 13 18 18 C 1.47015 * 125.64629 * 0.02562 * 17 15 14 19 19 C 1.54329 * 107.26942 * 178.67352 * 18 17 15 20 20 C 1.55160 * 102.94315 * 337.80965 * 19 18 17 21 21 H 1.08995 * 111.00033 * 277.42704 * 20 19 18 22 22 C 1.52999 * 111.00322 * 153.57339 * 20 19 18 23 23 O 1.43755 * 109.62829 * 180.36246 * 22 20 19 24 24 C 1.44588 * 104.91594 * 215.71118 * 23 22 20 25 25 C 1.54909 * 101.63711 * 36.26742 * 24 23 22 26 26 O 1.43365 * 109.63309 * 61.14824 * 22 20 19 27 27 C 1.47422 * 125.64583 * 179.71340 * 17 15 14 28 28 C 1.38302 * 120.14156 * 0.23152 * 13 12 11 29 29 C 1.38104 * 120.06625 * 359.48925 * 28 13 12 30 30 H 0.97003 * 119.99436 * 0.02562 * 1 2 3 31 31 H 1.07995 * 120.03246 * 359.95724 * 11 10 9 32 32 H 1.08004 * 119.96130 * 179.97438 * 12 11 10 33 33 H 1.09001 * 109.46961 * 329.99663 * 14 13 12 34 34 H 1.09005 * 109.46986 * 209.99797 * 14 13 12 35 35 H 1.09003 * 109.88791 * 298.09159 * 18 17 15 36 36 H 1.09004 * 109.88473 * 59.10844 * 18 17 15 37 37 H 1.09005 * 110.71493 * 96.17041 * 19 18 17 38 38 H 1.08994 * 110.72079 * 219.44652 * 19 18 17 39 39 H 1.08994 * 109.62820 * 300.75039 * 22 20 19 40 40 H 1.09000 * 111.08637 * 278.15357 * 24 23 22 41 41 H 1.08999 * 110.94603 * 154.31821 * 24 23 22 42 42 H 1.09004 * 110.69645 * 205.95852 * 25 24 23 43 43 H 1.09004 * 110.69597 * 82.75498 * 25 24 23 44 44 H 1.09002 * 110.36762 * 323.23896 * 27 17 15 45 45 H 1.09005 * 110.36767 * 85.55727 * 27 17 15 46 46 H 1.07997 * 119.96857 * 179.72884 * 28 13 12 47 47 H 1.07990 * 120.03416 * 180.25377 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4472 2.6527 0.6999 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 3.0888 -1.2008 0.0001 9 8 1.3346 -2.3685 0.0016 10 6 2.0699 -3.5045 0.1086 11 6 3.4571 -3.4395 0.0951 12 6 4.2022 -4.5970 0.2047 13 6 3.5685 -5.8201 0.3273 14 6 4.3848 -7.0813 0.4462 15 6 4.6642 -7.3637 1.8999 16 8 4.2418 -6.6149 2.7552 17 7 5.3828 -8.4491 2.2495 18 6 5.9520 -9.4356 1.3199 19 6 6.7156 -10.4757 2.1667 20 6 7.0103 -9.7051 3.4807 21 1 7.8965 -9.0792 3.3761 22 6 7.1581 -10.6685 4.6601 23 8 7.4216 -9.9244 5.8614 24 6 8.3331 -10.7521 6.6195 25 6 9.1999 -11.3728 5.4956 26 8 8.2567 -11.5579 4.4208 27 6 5.7337 -8.8400 3.6270 28 6 2.1872 -5.8888 0.3358 29 6 1.4364 -4.7343 0.2324 30 1 -0.4849 0.8401 -0.0004 31 1 3.9525 -2.4847 -0.0014 32 1 5.2811 -4.5471 0.1938 33 1 5.3270 -6.9559 -0.0873 34 1 3.8307 -7.9148 0.0141 35 1 5.1526 -9.9253 0.7638 36 1 6.6359 -8.9426 0.6290 37 1 6.0908 -11.3471 2.3625 38 1 7.6432 -10.7676 1.6744 39 1 6.2403 -11.2441 4.7798 40 1 7.7960 -11.5246 7.1698 41 1 8.9411 -10.1472 7.2922 42 1 9.6148 -12.3295 5.8130 43 1 9.9934 -10.6872 5.1980 44 1 5.9411 -7.9565 4.2308 45 1 4.9284 -9.4243 4.0723 46 1 1.6952 -6.8458 0.4274 47 1 0.3579 -4.7881 0.2432 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928001624.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:43 Heat of formation + Delta-G solvation = -118.392620 kcal Electronic energy + Delta-G solvation = -29440.412008 eV Core-core repulsion = 25168.305493 eV Total energy + Delta-G solvation = -4272.106515 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.04943 -39.96479 -38.87391 -37.54489 -36.30689 -35.52742 -32.91062 -32.34790 -31.21446 -30.27180 -30.07685 -29.14061 -26.83032 -25.33928 -24.56549 -23.79108 -23.11437 -21.89968 -21.05571 -20.65920 -19.15286 -17.92751 -17.89723 -17.51792 -17.08982 -16.88098 -16.29398 -16.05352 -15.38844 -15.08938 -14.66400 -14.51103 -14.35584 -14.21432 -13.96512 -13.71270 -13.62861 -13.45517 -13.39512 -13.23971 -12.83778 -12.74084 -12.62604 -12.35270 -12.23066 -11.80317 -11.77253 -11.53137 -11.44846 -11.20686 -11.19390 -10.78386 -10.77446 -10.69199 -10.55130 -10.37661 -10.15528 -9.65195 -9.25652 -8.75990 -8.72344 -8.07511 -7.09192 -6.38600 -3.96953 2.30652 2.32826 2.78622 2.83179 2.94650 3.17026 3.18580 3.23250 3.48178 3.99374 4.02464 4.13657 4.20770 4.30166 4.42498 4.50336 4.60740 4.76465 4.86027 4.91379 4.97270 4.99925 5.04531 5.14943 5.15497 5.29880 5.30839 5.34370 5.38672 5.39145 5.46356 5.59513 5.70934 5.73441 5.80377 5.82336 5.92311 6.18897 6.29142 6.49281 6.49563 6.77674 6.98911 7.12576 7.31233 7.44509 7.47313 7.52487 7.91392 8.06898 8.32903 9.07213 9.78310 10.79630 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.021585 B = 0.001770 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.912526 B =15813.118064 C =16460.693626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.390 4.390 8 H 0.092 0.908 9 O -0.179 6.179 10 C 0.157 3.843 11 C -0.232 4.232 12 C -0.056 4.056 13 C -0.170 4.170 14 C -0.074 4.074 15 C 0.526 3.474 16 O -0.517 6.517 17 N -0.630 5.630 18 C 0.101 3.899 19 C -0.116 4.116 20 C -0.116 4.116 21 H 0.095 0.905 22 C 0.245 3.755 23 O -0.373 6.373 24 C 0.015 3.985 25 C 0.020 3.980 26 O -0.381 6.381 27 C 0.119 3.881 28 C -0.059 4.059 29 C -0.191 4.191 30 H 0.269 0.731 31 H 0.126 0.874 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.110 0.890 42 H 0.101 0.899 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.067 0.933 46 H 0.108 0.892 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.932 -26.187 7.324 33.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.082 6.082 10 C 0.103 3.897 11 C -0.251 4.251 12 C -0.075 4.075 13 C -0.172 4.172 14 C -0.113 4.113 15 C 0.315 3.685 16 O -0.390 6.390 17 N -0.367 5.367 18 C -0.023 4.023 19 C -0.154 4.154 20 C -0.135 4.135 21 H 0.113 0.887 22 C 0.150 3.850 23 O -0.293 6.293 24 C -0.061 4.061 25 C -0.056 4.056 26 O -0.302 6.302 27 C -0.004 4.004 28 C -0.078 4.078 29 C -0.210 4.210 30 H 0.079 0.921 31 H 0.144 0.856 32 H 0.121 0.879 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.129 0.871 42 H 0.119 0.881 43 H 0.095 0.905 44 H 0.102 0.898 45 H 0.085 0.915 46 H 0.126 0.874 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 18.114 -25.379 7.617 32.097 hybrid contribution 0.685 0.679 0.201 0.985 sum 18.798 -24.700 7.818 32.010 Atomic orbital electron populations 1.70047 1.05930 1.27549 1.46367 1.25285 0.95847 0.98797 0.96661 0.85715 0.78954 0.80149 0.78627 1.19929 1.20286 1.19213 1.21327 0.91798 0.80869 1.52658 0.89100 1.83975 1.34332 1.11447 1.78472 1.19380 0.90287 0.88027 0.92010 1.21102 0.93812 0.98739 1.11490 1.20505 0.98027 0.91778 0.97160 1.18650 0.93232 0.92788 1.12489 1.20385 1.01063 0.97966 0.91922 1.20799 0.76885 0.78625 0.92209 1.90760 1.49757 1.46238 1.52292 1.48621 1.55017 1.25782 1.07300 1.22041 0.97517 0.89855 0.92858 1.22547 1.01052 0.97460 0.94313 1.22763 0.99671 0.96925 0.94166 0.88678 1.24015 0.90661 0.85945 0.84424 1.89265 1.65713 1.43353 1.30991 1.24387 0.91175 0.95191 0.95359 1.24225 0.92957 1.02329 0.86124 1.88894 1.32042 1.61500 1.47747 1.21994 0.94657 0.98981 0.84785 1.20399 0.92749 0.96719 0.97913 1.20153 0.99478 0.90283 1.11125 0.92104 0.85586 0.87858 0.89103 0.89047 0.91011 0.91122 0.90208 0.89368 0.89344 0.90443 0.87149 0.88076 0.90477 0.89846 0.91518 0.87398 0.86534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.03 13.67 55.48 0.76 -25.27 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 21.20 29.55 -169.99 -5.02 16.17 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.39 -11.32 9.49 30.89 0.29 -11.02 16 8 H 0.09 2.45 5.20 -52.49 -0.27 2.18 16 9 O -0.18 -5.32 9.76 0.06 0.00 -5.32 16 10 C 0.16 4.01 6.65 -39.10 -0.26 3.75 16 11 C -0.23 -5.39 9.17 -39.39 -0.36 -5.75 16 12 C -0.06 -1.12 9.69 -39.61 -0.38 -1.50 16 13 C -0.17 -3.12 4.38 -104.57 -0.46 -3.58 16 14 C -0.07 -1.00 5.02 -29.03 -0.15 -1.14 16 15 C 0.53 8.05 7.84 -10.98 -0.09 7.96 16 16 O -0.52 -10.54 16.29 5.56 0.09 -10.45 16 17 N -0.63 -7.30 3.33 -170.52 -0.57 -7.87 16 18 C 0.10 0.76 6.49 -3.07 -0.02 0.74 16 19 C -0.12 -0.73 6.17 -24.89 -0.15 -0.88 16 20 C -0.12 -0.93 3.06 -88.47 -0.27 -1.20 16 21 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 22 C 0.25 1.86 3.46 37.16 0.13 1.99 16 23 O -0.37 -3.21 11.21 -59.05 -0.66 -3.87 16 24 C 0.02 0.07 7.95 38.16 0.30 0.38 16 25 C 0.02 0.09 8.07 38.16 0.31 0.40 16 26 O -0.38 -2.81 10.95 -59.05 -0.65 -3.46 16 27 C 0.12 1.28 6.26 -2.53 -0.02 1.26 16 28 C -0.06 -1.15 9.69 -39.61 -0.38 -1.53 16 29 C -0.19 -4.32 9.99 -39.39 -0.39 -4.71 16 30 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.13 2.91 5.64 -52.49 -0.30 2.61 16 32 H 0.10 1.77 8.06 -52.48 -0.42 1.34 16 33 H 0.09 1.02 8.08 -51.93 -0.42 0.60 16 34 H 0.09 1.01 8.08 -51.93 -0.42 0.59 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.45 8.04 -51.93 -0.42 0.03 16 38 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.09 0.61 8.09 -51.93 -0.42 0.19 16 40 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.11 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.08 1.08 8.03 -51.93 -0.42 0.66 16 45 H 0.07 0.69 8.00 -51.93 -0.42 0.28 16 46 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 47 H 0.12 2.53 8.06 -52.49 -0.42 2.10 16 LS Contribution 391.76 15.07 5.90 5.90 Total: -1.00 -36.67 391.76 -9.00 -45.68 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -6.86 Total: 2.34 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -1.99 Total: -13.86 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: 0.19 Total: -33.14 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -1.22 Total: -23.10 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.67 -9.00 -45.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928001624.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.715 kcal (2) G-P(sol) polarization free energy of solvation -36.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds