Wall clock time and date at job start Wed Apr 1 2020 04:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86795 * 120.00072 * 2 1 4 4 H 1.48504 * 109.47049 * 269.99637 * 3 2 1 5 5 H 1.48496 * 109.47730 * 29.99763 * 3 2 1 6 6 H 1.48505 * 109.47141 * 150.00208 * 3 2 1 7 7 C 1.38658 * 119.99502 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99134 * 179.97438 * 7 2 1 9 9 O 1.34827 * 120.00044 * 359.97438 * 7 2 1 10 10 C 1.35749 * 116.99456 * 185.05429 * 9 7 2 11 11 C 1.38880 * 120.07298 * 354.46622 * 10 9 7 12 12 C 1.38102 * 119.92885 * 179.97438 * 11 10 9 13 13 C 1.38295 * 120.07057 * 0.02562 * 12 11 10 14 14 C 1.50705 * 119.92931 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47102 * 89.99852 * 14 13 12 16 16 O 1.21279 * 120.00176 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99848 * 179.97438 * 15 14 13 18 18 C 1.47015 * 125.64629 * 0.02562 * 17 15 14 19 19 C 1.54329 * 107.26942 * 178.67352 * 18 17 15 20 20 C 1.55160 * 102.94315 * 337.80965 * 19 18 17 21 21 H 1.08995 * 111.00033 * 277.42704 * 20 19 18 22 22 C 1.52999 * 111.00322 * 153.57339 * 20 19 18 23 23 O 1.43755 * 109.62829 * 180.36246 * 22 20 19 24 24 C 1.44588 * 104.91594 * 215.71118 * 23 22 20 25 25 C 1.54909 * 101.63711 * 36.26742 * 24 23 22 26 26 O 1.43365 * 109.63309 * 61.14824 * 22 20 19 27 27 C 1.47422 * 125.64583 * 179.71340 * 17 15 14 28 28 C 1.38302 * 120.14156 * 0.23152 * 13 12 11 29 29 C 1.38104 * 120.06625 * 359.48925 * 28 13 12 30 30 H 0.97003 * 119.99436 * 0.02562 * 1 2 3 31 31 H 1.07995 * 120.03246 * 359.95724 * 11 10 9 32 32 H 1.08004 * 119.96130 * 179.97438 * 12 11 10 33 33 H 1.09001 * 109.46961 * 329.99663 * 14 13 12 34 34 H 1.09005 * 109.46986 * 209.99797 * 14 13 12 35 35 H 1.09003 * 109.88791 * 298.09159 * 18 17 15 36 36 H 1.09004 * 109.88473 * 59.10844 * 18 17 15 37 37 H 1.09005 * 110.71493 * 96.17041 * 19 18 17 38 38 H 1.08994 * 110.72079 * 219.44652 * 19 18 17 39 39 H 1.08994 * 109.62820 * 300.75039 * 22 20 19 40 40 H 1.09000 * 111.08637 * 278.15357 * 24 23 22 41 41 H 1.08999 * 110.94603 * 154.31821 * 24 23 22 42 42 H 1.09004 * 110.69645 * 205.95852 * 25 24 23 43 43 H 1.09004 * 110.69597 * 82.75498 * 25 24 23 44 44 H 1.09002 * 110.36762 * 323.23896 * 27 17 15 45 45 H 1.09005 * 110.36767 * 85.55727 * 27 17 15 46 46 H 1.07997 * 119.96857 * 179.72884 * 28 13 12 47 47 H 1.07990 * 120.03416 * 180.25377 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4472 2.6527 0.6999 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 3.0888 -1.2008 0.0001 9 8 1.3346 -2.3685 0.0016 10 6 2.0699 -3.5045 0.1086 11 6 3.4571 -3.4395 0.0951 12 6 4.2022 -4.5970 0.2047 13 6 3.5685 -5.8201 0.3273 14 6 4.3848 -7.0813 0.4462 15 6 4.6642 -7.3637 1.8999 16 8 4.2418 -6.6149 2.7552 17 7 5.3828 -8.4491 2.2495 18 6 5.9520 -9.4356 1.3199 19 6 6.7156 -10.4757 2.1667 20 6 7.0103 -9.7051 3.4807 21 1 7.8965 -9.0792 3.3761 22 6 7.1581 -10.6685 4.6601 23 8 7.4216 -9.9244 5.8614 24 6 8.3331 -10.7521 6.6195 25 6 9.1999 -11.3728 5.4956 26 8 8.2567 -11.5579 4.4208 27 6 5.7337 -8.8400 3.6270 28 6 2.1872 -5.8888 0.3358 29 6 1.4364 -4.7343 0.2324 30 1 -0.4849 0.8401 -0.0004 31 1 3.9525 -2.4847 -0.0014 32 1 5.2811 -4.5471 0.1938 33 1 5.3270 -6.9559 -0.0873 34 1 3.8307 -7.9148 0.0141 35 1 5.1526 -9.9253 0.7638 36 1 6.6359 -8.9426 0.6290 37 1 6.0908 -11.3471 2.3625 38 1 7.6432 -10.7676 1.6744 39 1 6.2403 -11.2441 4.7798 40 1 7.7960 -11.5246 7.1698 41 1 8.9411 -10.1472 7.2922 42 1 9.6148 -12.3295 5.8130 43 1 9.9934 -10.6872 5.1980 44 1 5.9411 -7.9565 4.2308 45 1 4.9284 -9.4243 4.0723 46 1 1.6952 -6.8458 0.4274 47 1 0.3579 -4.7881 0.2432 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928001624.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:42 Heat of formation + Delta-G solvation = -143.707559 kcal Electronic energy + Delta-G solvation = -29441.509746 eV Core-core repulsion = 25168.305493 eV Total energy + Delta-G solvation = -4273.204253 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.64532 -41.07414 -40.49617 -38.71253 -37.92467 -36.04772 -34.41520 -33.75193 -32.60715 -31.78744 -30.84554 -29.83168 -28.27322 -27.13769 -25.55763 -24.20460 -23.84055 -23.64546 -22.33865 -21.59371 -20.20012 -19.83404 -18.84110 -18.44264 -18.16332 -17.94182 -17.04118 -16.79493 -16.46249 -16.42126 -16.15409 -15.84715 -15.63506 -15.48404 -15.14081 -14.99495 -14.60617 -14.44946 -14.35793 -14.21670 -14.09839 -13.80096 -13.74867 -13.60412 -13.38639 -12.96600 -12.80139 -12.70254 -12.48863 -12.33169 -12.29038 -12.21179 -12.15858 -12.12863 -11.75123 -11.19722 -11.18735 -10.97316 -10.77040 -10.63563 -9.77461 -9.65958 -8.91236 -8.47860 -6.16044 0.60494 0.65392 1.33098 1.42812 1.51314 1.67001 1.97237 2.17219 2.39004 2.81893 2.95885 3.14861 3.50009 3.52627 3.54332 3.69409 3.77236 3.85296 4.03234 4.04051 4.11720 4.12518 4.19215 4.26601 4.33842 4.34752 4.46045 4.48956 4.58007 4.61802 4.64876 4.71559 4.76829 4.78841 4.85200 4.92776 4.99122 5.06624 5.09722 5.14148 5.24948 5.29307 5.35468 5.55695 5.70620 5.76830 6.02215 6.02422 6.21342 6.52234 6.96519 7.21839 7.77663 8.75575 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.021585 B = 0.001770 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.912526 B =15813.118064 C =16460.693626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.025 4.025 3 Si 1.020 2.980 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.256 1.256 7 C -0.415 4.415 8 H 0.100 0.900 9 O -0.233 6.233 10 C 0.112 3.888 11 C -0.244 4.244 12 C -0.061 4.061 13 C -0.147 4.147 14 C -0.069 4.069 15 C 0.522 3.478 16 O -0.584 6.584 17 N -0.623 5.623 18 C 0.092 3.908 19 C -0.106 4.106 20 C -0.108 4.108 21 H 0.086 0.914 22 C 0.246 3.754 23 O -0.403 6.403 24 C 0.009 3.991 25 C 0.017 3.983 26 O -0.391 6.391 27 C 0.116 3.884 28 C -0.057 4.057 29 C -0.206 4.206 30 H 0.273 0.727 31 H 0.118 0.882 32 H 0.137 0.863 33 H 0.127 0.873 34 H 0.131 0.869 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.080 0.920 44 H 0.052 0.948 45 H 0.069 0.931 46 H 0.147 0.853 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.168 -29.519 6.762 37.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.222 4.222 3 Si 0.839 3.161 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.180 1.180 7 C -0.491 4.491 8 H 0.117 0.883 9 O -0.140 6.140 10 C 0.062 3.938 11 C -0.263 4.263 12 C -0.079 4.079 13 C -0.148 4.148 14 C -0.108 4.108 15 C 0.313 3.687 16 O -0.463 6.463 17 N -0.358 5.358 18 C -0.030 4.030 19 C -0.144 4.144 20 C -0.127 4.127 21 H 0.105 0.895 22 C 0.150 3.850 23 O -0.324 6.324 24 C -0.066 4.066 25 C -0.059 4.059 26 O -0.313 6.313 27 C -0.007 4.007 28 C -0.075 4.075 29 C -0.225 4.225 30 H 0.082 0.918 31 H 0.136 0.864 32 H 0.155 0.845 33 H 0.145 0.855 34 H 0.149 0.851 35 H 0.113 0.887 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.123 0.877 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.098 0.902 44 H 0.070 0.930 45 H 0.087 0.913 46 H 0.165 0.835 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 21.418 -28.824 7.038 36.594 hybrid contribution -0.142 1.290 0.465 1.379 sum 21.276 -27.534 7.503 35.596 Atomic orbital electron populations 1.70194 1.08001 1.28778 1.48931 1.26626 0.96923 1.02764 0.95863 0.84571 0.77664 0.74445 0.79396 1.18401 1.19469 1.17976 1.21822 0.92482 0.81526 1.53268 0.88307 1.83936 1.35914 1.12574 1.81551 1.19933 0.91622 0.88002 0.94219 1.21225 0.93166 0.99955 1.11971 1.20923 0.99652 0.91191 0.96109 1.19258 0.93423 0.94498 1.07611 1.20493 1.02458 0.96440 0.91448 1.20984 0.76698 0.78808 0.92219 1.90754 1.52828 1.48765 1.53946 1.48626 1.53378 1.25250 1.08556 1.22414 0.98653 0.89337 0.92551 1.22564 1.01867 0.97151 0.92814 1.22668 0.97606 0.96751 0.95698 0.89534 1.23999 0.91173 0.85834 0.83974 1.89245 1.66616 1.44692 1.31801 1.24629 0.91035 0.95444 0.95523 1.24419 0.92447 1.03698 0.85315 1.88867 1.32371 1.61251 1.48762 1.22005 0.96280 0.98215 0.84242 1.20876 0.93450 0.97005 0.96192 1.20445 0.99941 0.90653 1.11453 0.91825 0.86435 0.84539 0.85544 0.85120 0.88715 0.89306 0.89106 0.87733 0.88736 0.89295 0.85806 0.85722 0.90218 0.92974 0.91291 0.83533 0.86854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.61 13.67 21.61 0.30 -58.31 16 2 C -0.02 -1.46 5.49 84.83 0.47 -0.99 16 3 Si 1.02 44.81 29.55 68.60 2.03 46.84 16 4 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 5 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 6 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 7 C -0.41 -25.49 9.49 67.92 0.64 -24.84 16 8 H 0.10 5.62 5.20 -2.91 -0.02 5.60 16 9 O -0.23 -14.87 9.76 -22.70 -0.22 -15.09 16 10 C 0.11 6.06 6.65 22.58 0.15 6.21 16 11 C -0.24 -11.61 9.17 22.39 0.21 -11.41 16 12 C -0.06 -2.32 9.69 22.25 0.22 -2.10 16 13 C -0.15 -4.97 4.38 -19.83 -0.09 -5.05 16 14 C -0.07 -1.54 5.02 29.10 0.15 -1.39 16 15 C 0.52 14.55 7.84 87.66 0.69 15.24 16 16 O -0.58 -23.47 16.29 -3.03 -0.05 -23.52 16 17 N -0.62 -12.59 3.33 -811.79 -2.70 -15.29 16 18 C 0.09 0.94 6.49 86.73 0.56 1.50 16 19 C -0.11 -0.90 6.17 31.79 0.20 -0.71 16 20 C -0.11 -1.51 3.06 -9.40 -0.03 -1.53 16 21 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 22 C 0.25 3.31 3.46 71.98 0.25 3.56 16 23 O -0.40 -6.59 11.21 -126.20 -1.42 -8.00 16 24 C 0.01 0.08 7.95 72.63 0.58 0.65 16 25 C 0.02 0.12 8.07 72.63 0.59 0.71 16 26 O -0.39 -4.80 10.95 -126.20 -1.38 -6.19 16 27 C 0.12 2.36 6.26 86.86 0.54 2.90 16 28 C -0.06 -2.11 9.69 22.25 0.22 -1.90 16 29 C -0.21 -9.56 9.99 22.39 0.22 -9.34 16 30 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 31 H 0.12 5.65 5.64 -2.91 -0.02 5.64 16 32 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 33 H 0.13 2.03 8.08 -2.39 -0.02 2.01 16 34 H 0.13 2.00 8.08 -2.38 -0.02 1.98 16 35 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 37 H 0.09 0.62 8.04 -2.38 -0.02 0.60 16 38 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.10 1.12 8.09 -2.39 -0.02 1.10 16 40 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.12 0.26 8.14 -2.38 -0.02 0.25 16 43 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 44 H 0.05 1.39 8.03 -2.39 -0.02 1.37 16 45 H 0.07 1.37 8.00 -2.38 -0.02 1.35 16 46 H 0.15 4.24 8.06 -2.91 -0.02 4.21 16 47 H 0.11 5.17 8.06 -2.92 -0.02 5.15 16 Total: -1.00 -88.34 391.76 3.09 -85.25 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 0.98 Total: 22.82 kcal Atomic # 6 Polarization: -34.05 SS G_CDS: 5.56 Total: -28.50 kcal Atomic # 7 Polarization: -71.20 SS G_CDS: -2.40 Total: -73.60 kcal Atomic # 8 Polarization: -49.74 SS G_CDS: -3.07 Total: -52.80 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -88.34 3.09 -85.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928001624.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.454 kcal (2) G-P(sol) polarization free energy of solvation -88.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds