Wall clock time and date at job start Wed Apr 1 2020 04:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86795 * 120.00033 * 2 1 4 4 H 1.48494 * 109.47431 * 239.99852 * 3 2 1 5 5 H 1.48503 * 109.47218 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47011 * 120.00087 * 3 2 1 7 7 C 1.38654 * 119.99681 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99815 * 180.02562 * 7 2 1 9 9 O 1.34826 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.35754 * 116.99769 * 185.05774 * 9 7 2 11 11 C 1.38877 * 120.06905 * 354.46620 * 10 9 7 12 12 C 1.38104 * 119.92873 * 179.97438 * 11 10 9 13 13 C 1.38294 * 120.06691 * 359.97438 * 12 11 10 14 14 C 1.50713 * 119.92678 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47022 * 89.99968 * 14 13 12 16 16 O 1.21285 * 120.00061 * 359.97438 * 15 14 13 17 17 N 1.34771 * 119.99961 * 180.02562 * 15 14 13 18 18 C 1.47027 * 125.64844 * 359.97280 * 17 15 14 19 19 C 1.54320 * 107.27054 * 181.10056 * 18 17 15 20 20 C 1.55161 * 102.94507 * 22.19433 * 19 18 17 21 21 H 1.08999 * 111.00239 * 82.60580 * 20 19 18 22 22 C 1.52995 * 111.00231 * 206.42336 * 20 19 18 23 23 O 1.44388 * 110.11173 * 177.70932 * 22 20 19 24 24 C 1.44993 * 103.15549 * 158.42485 * 23 22 20 25 25 C 1.54447 * 102.91589 * 323.40382 * 24 23 22 26 26 O 1.43786 * 110.11724 * 294.52335 * 22 20 19 27 27 C 1.47469 * 125.63183 * 180.02562 * 17 15 14 28 28 C 1.38300 * 120.14407 * 0.27620 * 13 12 11 29 29 C 1.38105 * 120.06648 * 359.48894 * 28 13 12 30 30 H 0.97005 * 119.99833 * 359.97438 * 1 2 3 31 31 H 1.07999 * 120.03721 * 359.95745 * 11 10 9 32 32 H 1.07999 * 119.95953 * 180.02562 * 12 11 10 33 33 H 1.09000 * 109.47088 * 329.99789 * 14 13 12 34 34 H 1.08998 * 109.46716 * 210.00050 * 14 13 12 35 35 H 1.08997 * 109.87993 * 61.68141 * 18 17 15 36 36 H 1.09008 * 110.01021 * 300.59183 * 18 17 15 37 37 H 1.08998 * 110.71904 * 263.82663 * 19 18 17 38 38 H 1.09006 * 110.86925 * 140.63047 * 19 18 17 39 39 H 1.08999 * 110.09262 * 56.11714 * 22 20 19 40 40 H 1.08994 * 110.71768 * 205.04687 * 24 23 22 41 41 H 1.08995 * 110.71445 * 81.76561 * 24 23 22 42 42 H 1.08998 * 110.32223 * 262.89409 * 25 24 23 43 43 H 1.09008 * 110.40321 * 140.73719 * 25 24 23 44 44 H 1.09002 * 110.40561 * 37.00673 * 27 17 15 45 45 H 1.09005 * 110.34533 * 274.67043 * 27 17 15 46 46 H 1.08000 * 119.97007 * 179.72685 * 28 13 12 47 47 H 1.07989 * 120.03375 * 180.25586 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6964 -1.2124 5 1 1.2846 2.7465 0.0006 6 1 3.1034 1.6963 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5046 0.1056 11 6 3.4571 -3.4395 0.0921 12 6 4.2023 -4.5972 0.2008 13 6 3.5686 -5.8202 0.3234 14 6 4.3849 -7.0815 0.4424 15 6 4.6642 -7.3638 1.8961 16 8 4.2424 -6.6144 2.7513 17 7 5.3836 -8.4485 2.2457 18 6 5.9530 -9.4352 1.3162 19 6 6.6652 -10.5080 2.1667 20 6 5.9746 -10.3705 3.5493 21 1 5.0333 -10.9197 3.5720 22 6 6.9029 -10.8322 4.6743 23 8 6.2620 -10.6462 5.9547 24 6 6.9770 -11.5655 6.8183 25 6 7.2485 -12.7702 5.8908 26 8 7.1612 -12.2417 4.5553 27 6 5.7289 -8.8426 3.6242 28 6 2.1873 -5.8889 0.3319 29 6 1.4365 -4.7344 0.2285 30 1 -0.4850 0.8401 0.0004 31 1 3.9526 -2.4847 -0.0035 32 1 5.2811 -4.5471 0.1908 33 1 5.3272 -6.9561 -0.0910 34 1 3.8310 -7.9148 0.0102 35 1 6.6706 -8.9500 0.6546 36 1 5.1589 -9.8953 0.7281 37 1 7.7310 -10.2932 2.2449 38 1 6.5033 -11.5030 1.7518 39 1 7.8393 -10.2754 4.6394 40 1 6.3564 -11.8619 7.6639 41 1 7.9127 -11.1239 7.1611 42 1 6.4942 -13.5422 6.0424 43 1 8.2445 -13.1738 6.0737 44 1 4.9022 -8.6241 4.3003 45 1 6.6329 -8.3282 3.9503 46 1 1.6953 -6.8459 0.4234 47 1 0.3580 -4.7883 0.2393 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928001625.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:46 Heat of formation + Delta-G solvation = -144.413810 kcal Electronic energy + Delta-G solvation = -29396.753725 eV Core-core repulsion = 25123.518846 eV Total energy + Delta-G solvation = -4273.234878 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.59892 -41.06115 -40.49575 -38.72412 -37.92804 -36.00766 -34.41074 -33.77315 -32.61299 -31.78350 -30.85445 -29.84742 -28.28269 -27.14497 -25.63009 -24.06737 -23.82059 -23.64247 -22.33762 -21.62241 -20.20528 -19.82824 -18.82878 -18.44893 -18.16232 -17.76074 -17.04223 -16.82131 -16.57998 -16.38441 -16.24846 -15.91753 -15.70767 -15.49209 -15.18996 -14.96423 -14.52986 -14.46782 -14.36700 -14.21600 -14.12739 -13.77797 -13.60127 -13.57445 -13.33263 -12.94944 -12.80303 -12.68634 -12.47609 -12.36720 -12.29876 -12.22124 -12.16727 -12.13732 -11.74473 -11.24283 -11.18643 -10.96444 -10.76805 -10.70726 -9.77101 -9.66370 -8.90934 -8.47214 -6.15599 0.60834 0.65798 1.33420 1.44753 1.50356 1.67170 1.95330 2.17818 2.45539 2.81124 2.88558 3.15230 3.50746 3.52421 3.54058 3.67497 3.76063 3.85812 3.99219 4.04136 4.11959 4.12778 4.19940 4.21953 4.28666 4.35135 4.46486 4.50793 4.58113 4.59363 4.65163 4.71159 4.77715 4.79513 4.84729 4.89967 5.00710 5.07864 5.11964 5.14156 5.26063 5.29581 5.34700 5.55988 5.70966 5.77169 5.92010 6.02480 6.21708 6.51923 6.96936 7.21894 7.78112 8.75973 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.024017 B = 0.001727 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.568272 B =16210.635549 C =16621.768698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.020 2.980 4 H -0.254 1.254 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.416 4.416 8 H 0.100 0.900 9 O -0.233 6.233 10 C 0.112 3.888 11 C -0.244 4.244 12 C -0.060 4.060 13 C -0.147 4.147 14 C -0.069 4.069 15 C 0.523 3.477 16 O -0.583 6.583 17 N -0.623 5.623 18 C 0.092 3.908 19 C -0.108 4.108 20 C -0.096 4.096 21 H 0.088 0.912 22 C 0.242 3.758 23 O -0.401 6.401 24 C 0.007 3.993 25 C 0.017 3.983 26 O -0.395 6.395 27 C 0.117 3.883 28 C -0.058 4.058 29 C -0.206 4.206 30 H 0.273 0.727 31 H 0.119 0.881 32 H 0.139 0.861 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.121 0.879 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.107 0.893 44 H 0.053 0.947 45 H 0.070 0.930 46 H 0.145 0.855 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.367 -29.909 6.951 37.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.222 4.222 3 Si 0.839 3.161 4 H -0.178 1.178 5 H -0.194 1.194 6 H -0.185 1.185 7 C -0.492 4.492 8 H 0.117 0.883 9 O -0.140 6.140 10 C 0.062 3.938 11 C -0.263 4.263 12 C -0.078 4.078 13 C -0.148 4.148 14 C -0.108 4.108 15 C 0.313 3.687 16 O -0.463 6.463 17 N -0.358 5.358 18 C -0.029 4.029 19 C -0.146 4.146 20 C -0.116 4.116 21 H 0.107 0.893 22 C 0.147 3.853 23 O -0.322 6.322 24 C -0.069 4.069 25 C -0.059 4.059 26 O -0.317 6.317 27 C -0.006 4.006 28 C -0.076 4.076 29 C -0.226 4.226 30 H 0.082 0.918 31 H 0.137 0.863 32 H 0.156 0.844 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.124 0.876 39 H 0.109 0.891 40 H 0.139 0.861 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.125 0.875 44 H 0.071 0.929 45 H 0.088 0.912 46 H 0.163 0.837 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 20.533 -29.241 7.201 36.448 hybrid contribution -0.200 1.170 0.558 1.311 sum 20.333 -28.071 7.758 35.519 Atomic orbital electron populations 1.70191 1.08018 1.28844 1.48876 1.26631 0.96916 1.02780 0.95837 0.84635 0.77394 0.74165 0.79906 1.17838 1.19404 1.18499 1.21791 0.92503 0.81520 1.53362 0.88257 1.83936 1.35934 1.12574 1.81557 1.19931 0.91666 0.87966 0.94223 1.21235 0.93122 1.00011 1.11941 1.20931 0.99719 0.91103 0.96005 1.19260 0.93368 0.94562 1.07617 1.20494 1.02544 0.96364 0.91432 1.20984 0.76457 0.78990 0.92235 1.90758 1.52904 1.48665 1.53941 1.48620 1.53389 1.25341 1.08451 1.22406 0.98893 0.89088 0.92543 1.22600 1.00302 1.00023 0.91637 1.22396 0.99831 0.94167 0.95157 0.89332 1.24304 0.94479 0.82759 0.83808 1.89540 1.59264 1.62532 1.20866 1.24547 0.98878 0.88284 0.95171 1.24174 1.04453 0.96992 0.80299 1.88870 1.92903 1.22002 1.27902 1.21993 1.00377 0.94013 0.84257 1.20871 0.93531 0.96951 0.96260 1.20437 0.99906 0.90694 1.11525 0.91832 0.86350 0.84350 0.85301 0.85290 0.88652 0.89154 0.88959 0.87636 0.89083 0.86072 0.89109 0.89192 0.87524 0.92852 0.91193 0.83689 0.86946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.62 13.67 21.61 0.30 -58.33 16 2 C -0.02 -1.45 5.49 84.83 0.47 -0.98 16 3 Si 1.02 44.66 29.55 68.60 2.03 46.69 16 4 H -0.25 -10.34 7.11 99.48 0.71 -9.63 16 5 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 6 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 7 C -0.42 -25.49 9.49 67.92 0.64 -24.84 16 8 H 0.10 5.61 5.20 -2.91 -0.02 5.60 16 9 O -0.23 -14.89 9.76 -22.75 -0.22 -15.11 16 10 C 0.11 6.04 6.65 22.58 0.15 6.19 16 11 C -0.24 -11.54 9.17 22.39 0.21 -11.33 16 12 C -0.06 -2.25 9.69 22.25 0.22 -2.03 16 13 C -0.15 -4.95 4.38 -19.83 -0.09 -5.04 16 14 C -0.07 -1.52 5.02 29.11 0.15 -1.38 16 15 C 0.52 14.43 7.84 87.66 0.69 15.12 16 16 O -0.58 -23.33 16.29 -3.05 -0.05 -23.38 16 17 N -0.62 -12.40 3.33 -811.61 -2.70 -15.10 16 18 C 0.09 0.91 6.49 86.73 0.56 1.47 16 19 C -0.11 -0.88 6.28 31.78 0.20 -0.68 16 20 C -0.10 -1.35 3.08 -9.39 -0.03 -1.38 16 21 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 22 C 0.24 3.26 3.29 71.98 0.24 3.50 16 23 O -0.40 -6.75 11.39 -125.99 -1.43 -8.19 16 24 C 0.01 0.06 7.82 72.47 0.57 0.63 16 25 C 0.02 0.12 8.08 72.47 0.59 0.71 16 26 O -0.40 -5.17 11.12 -125.99 -1.40 -6.57 16 27 C 0.12 2.35 6.24 86.86 0.54 2.89 16 28 C -0.06 -2.15 9.69 22.25 0.22 -1.94 16 29 C -0.21 -9.62 9.99 22.39 0.22 -9.39 16 30 H 0.27 15.88 8.31 -92.70 -0.77 15.11 16 31 H 0.12 5.64 5.64 -2.91 -0.02 5.63 16 32 H 0.14 4.21 8.06 -2.91 -0.02 4.18 16 33 H 0.13 1.98 8.08 -2.39 -0.02 1.96 16 34 H 0.13 1.99 8.08 -2.39 -0.02 1.97 16 35 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.09 0.57 8.04 -2.39 -0.02 0.55 16 38 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 39 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.11 0.31 8.14 -2.38 -0.02 0.29 16 44 H 0.05 1.41 8.04 -2.39 -0.02 1.39 16 45 H 0.07 1.36 8.04 -2.38 -0.02 1.34 16 46 H 0.15 4.25 8.06 -2.91 -0.02 4.23 16 47 H 0.11 5.16 8.06 -2.92 -0.02 5.14 16 Total: -1.00 -88.66 392.00 3.02 -85.63 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: 0.98 Total: 22.84 kcal Atomic # 6 Polarization: -34.02 SS G_CDS: 5.53 Total: -28.49 kcal Atomic # 7 Polarization: -71.02 SS G_CDS: -2.40 Total: -73.43 kcal Atomic # 8 Polarization: -50.13 SS G_CDS: -3.11 Total: -53.24 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -88.66 3.02 -85.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928001625.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.780 kcal (2) G-P(sol) polarization free energy of solvation -88.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds